john hawks weblog

paleoanthropology, genetics and evolution

Flores

  • Retractions dept.

    Sat, 2005-04-09 21:10 -- John Hawks

    ...wherein I disavow any suggestion that LB1 or any of the Flores fossils are australopithecines.

    Along with four of the best anatomists that I know, I had the opportunity to see detailed pictures of the LB1 postcrania.

    The specimen is beyond any doubt or question pathological.

    This is very clearly shown by many details that are either not depicted or are not clear in the photos in the original Nature paper. It is not my place to provide more information about these details; my understanding is that a thorough presentation of them is forthcoming. I will say that this specimen has morphological characters that would indicate severe developmental abnormalities even if the skull had never been found. This is in no way a close call.

    It remains to be shown whether the pathology in the specimen explains its brain size. Examination of the endocast shows features that are highly unusual. It would seem to me remarkable if the occurrence of these features was purely coincidental with the postcranial and cranial pathology.

    My suggestion of australopithecine affinity was based strongly on the anatomy of the pelvis and the size of the brain. Since the specimen is pathological, I no longer trust that either feature characterized the Flores population rather than this single individual.

    I also saw the other skeletal specimens. These have not been described, so I will not talk about them, although their existence has been widely cited as evidence that LB1 was typical of its population. A look at the rest of the sample lends little credence to this idea.

    The bottom line is that this specimen cannot be assumed to be representative of the population from which it came. Any interpretation that starts with the assumption that LB1 is normal should be viewed with extreme skepticism.

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  • A show of "no support"

    Sat, 2005-03-26 00:10 -- John Hawks

    In
    an article about the controversy over the Liang Bua fossils, Rex Dalton of Nature inserts this non sequitur:

    Somewhat scientifically isolated, the 75-year-old Jacob has continued to adhere to the theory that hominin species from multiple regions around the globe evolved into a single line that produced modern H. sapiens. In this theory, Neanderthals were direct ancestors of modern humans, but most studies have shown that they were not related to H. sapiens. The 'multi-regional' theory has virtually no support among the world's leading anthropologists (Dalton 2005:433).

    Those knowledgable about the field will recognize that this comment is startingly false. One may dispute whether this scientist or that one is a "leading anthropologist" but there is a better way to address the question: simply do a citation survey. My own informal survey of citation rates indicates that the top two paleoanthropologists in terms of citations both are public supporters of a multiregional model. The next few have written mainly about australopithecines, with varying opinions about modern human origins. (UPDATE: A later post has provided a top ten list of citation rates. The top two are no longer the same as indicated here -- formerly they were Wolpoff and Trinkaus, who are now 3 and 10 on the list -- and I make no claims about the opinions of the current leaders about modern human origins).

    Now suppose we extend the frame to encompass the top 100 or so paleoanthropologists. Does anyone seriously think that this does injury to the representation of the multiregional perspective?

    OK, but suppose we consider only those that have their work published in Nature. After all, we can presume safely I think that Dalton reads his own journal. And it is true that scientists that have been asked to comment on new finds within the past five years have been supporters of a more speciose, bushy taxonomy for the hominids. But this is partly because of the recent finds themselves, like the Lomekwi hominids, that invite the splitter-vs.-lumper dialectic. Among research articles we find not only Tim White and colleagues' (2003) Herto paper arguing for a recent African origin, but also Alan Templeton's (2002) paper supporting multiregional evolution from a genetic perspective. In short, there is no single perspective that dominates the field today, and I think that is a very good thing. We do not need comments that appear to stifle honest disagreement or marginalize those who remain skeptics of even widely-held notions.

    I have addressed elsewhere the idea that the Liang Bua skeleton somehow addresses the modern human origins problem. I concluded, and still believe, that it makes virtually no difference one way or another. Clearly if a small population of ancient humans became isolated 900,000 or more years ago and no longer exchanged genes with other human populations, its evolution can say nothing about the possibility of genetic exchanges across the continental areas of the Old World. Multiregional evolution simply has nothing to say about this particular problem

    But it cannot be denied that people like Teuku Jacob, Alan Thorne, and Maciej Henneberg who have expressed skepticism over the original interpretation of the skeleton have elsewhere written in support of a multiregional model of human evolution. Some, like Dalton, have argued that this shows that the multiregional model is threatened by the possibility that Homo floresiensis was a real dwarf species of hominid.

    I disagree. In my opinion, the reason is that some scientists treat variation more seriously than others. The real split in the field is not between lumpers and splitters or between multiregional evolution and a recent African origin. The real split is between populationists and typologists. Not all populationists are multiregionalists, but the hypothesis is more often accepted by those who consider variation within populations as an important product of evolution. A populationist is less likely to accept the idea that a singular fossil is representative of its population (or species), because no single individual can be representative of a range of variation. It is that perspective that leads to skepticism about the Liang Bua fossil.

    The variability within species of hominoids is often underestimated. For apes, this is often because researchers have only examined a small number of specimens in detail. Most research studies that include extant apes as comparisons use fewer than 30 specimens. Moreover, even very extensive skeletal collections of apes, like that at the
    Cleveland Museum of Natural History have biases that may underrepresent variability. Most of the specimens in that collection were wild-shot, and among the gorillas males are highly overrepresented. It is plausible, even likely, that there is a bias among these males for large, healthy specimens that would fetch a good price. Paleopathology is very different in an ape context than in a human context. Among apes, serious pathologies are generally fatal early in life, and we do not find them in skeletal collections. So from that perspective, apes make a poor comparative model for early humans.

    For humans, there is not only the problem that collections are often small and geographically represent only a small area, but also that pathologies may have been specifically excluded. For example, the Hamann-Todd collection at the Cleveland Museum of Natural History consists of a large proportion of indigents whose bodies were assigned to the collection by the state. In various ways, these people were not representative of the Ohio population in health and other characteristics, but for our present purposes the most obvious problem is that microcephalics do not tend to die in circumstances that would get them into this collection. Pathological specimens do end up in medical pathology collections, but these are in many instances separated out from the normal variation within their populations.

    Thus, few biological anthropologists gain a full understanding of human variation including pathological variants. No one knows to what extent the proportion of congenital or developmental defects may have been in early human populations that differed from ours in environment. For that matter, no one knows how a pathology present in today's humans may necessarily have manifested in a Stone Age human lacking today's medical interventions, nutrition, and lifestyle. These are some of the reasons why paleopathology is such an interesting and problematic research field.

    None of this proves that the Liang Bua specimen does not represent a new species of hominid. But they do give reason for cautious skepticism.

    More on the Flores hominids

    Home

    References:

    Dalton R. 2005. Looking for the ancestors. Nature 434:432-434. Nature online

  • Have the hobbits been protsched?

    Tue, 2005-03-22 22:58 -- John Hawks

    USA Today has a feature article about the damage to the Liang Bua fossils upon their return from Yogyakarta. The article is available
    online, but the pictures of the damage do not accompany the online edition. The pictures show the innominates broken into small fragments, and one of the mandibles apparently broken and glued into a misaligned position.

    Here are two pictures. The damage is most profound to the innominate, but of course no attempt has been made at repair:


    The article lists the damage:

    The team charges the remains were severely damaged by rubber molds made at Jacob's lab:

    Much of the detail at the base of the skull was pulled off.

    The left outer eye socket and two teeth were broken off and glued back. Bits of molded rubber still adhere to some sections.

    Long, deep cuts mark the lower edge of the hobbit's jaw on both sides, left by a blade used to cut away molded rubber.

    The chin of a second hobbit jaw was snapped off, losing bone. It was glued back together misaligned and at an incorrect angle.

    The pelvis was smashed, perhaps in transit, destroying details that reveal body shape, gait and evolutionary history.

    "We have a big dispute with Professor Jacob," says Tony Djubiantono, chief of the archaeology center and co-leader of the team. "We didn't give him permission to do any of these things."

    "The equivalent in the world of art would be somebody slashing the Mona Lisa and then trying to fix it with chewing gum," says paleontologist Tim White of the University of California-Berkeley, who was not on the discovery team.

    White suggests that a reason for the damage may be inexperience with working with wet fossils, which can be easily damaged by molding.

    An interesting note on the possibility of DNA testing:

    Jacob allowed human-origins researcher Jean-Jacques Hublin of Germany's Max Plank [sic] Institute to take a small section of hobbit fossil to Germany for genetic analysis. "This is completely unethical," Roberts says. "This is freeloading on our discovery." Hublin did not respond to a request for comment.

    Sounding a bit like Kennewick; we can only hope the outcome does not take as long to resolve.

    On a side note, seeing an article on paleoanthropology right across the fold from a preview of "American Idol" is definitely a step up from "Hogzilla"....

    The Pacific edition of Time also has
    an article. It's shorter, but has a little extra red meat:

    Jacob denies that any damage was done to the bones in his lab - or even that a cast has been made. "(The Australians) blame us for everything," he says. "They think they own the skulls and they own the cave and they think Indonesia is part of Australia. The Indonesian government has regulations about making and selling casts. So you cannot make them easily. You have to follow the rules and the government can intervene if you make something wrong.''

    And there is this troubling aspect:

    Although no unauthorized copies of the cast have surfaced, Morwood has drafted a letter asserting that the intellectual property rights to the bones, including casts, belong to the Jakarta Center for Archaeology, whose scientists are on his team.

    Read that carefully: a scientist is asserting copyright on casts taken by others from a fossil hominid. This is a research team arguing that they and only they (through the institution that sponsors them) have the right to create or release copies and data resulting from observation of an original specimen. In this case, it seems pretty clear that the specimen should not have been molded, because of the high probability of damage. But the right to refuse to sanction a mold (a decision properly made by permit-granting authorities or their delegates) is different from an intellectual property right over the casts.

    I think we are steering onto dangerous ground. In this particular case, I think the Australians are boxed into a corner and I am not surprised to see them taking whatever steps they think may work. But this case is not singular, it is merely the most public example of a broad trend.

    I have been invited to speak in a symposium at the American Anthropological Association meeting on the ethical issues encompassing fossil and data ownership. To do so, I will be corresponding with both scientists and intellectual property lawyers to arrive at an understanding of both the legal and historical issues at play. The time may be coming when the scientists will no longer be entrusted to write the rules. To many of us that will seem like a sad day for the field, but the fact is that it took many sad days to lead us here.

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  • The Ultimate Survivor!

    Sun, 2005-03-20 22:06 -- John Hawks

    OK, I was drawn in by the first few minutes, so I'm liveblogging the National Geographic show, "The Ultimate Survivor."

    8:02 -- Lee Berger has fossil evidence of a giant race of ancient humans?

    8:05 -- The basic theme is the bush vs. ladder theme. To illustrate the ladder, they have an australopithecine pick up a steel baton and pass it on to later hominids. Forty years of Hollywood technology since "2001" and we've got a bunch of plasticine freaks passing a steel baton. I want the monolith back!

    8:10 -- The idea of a family tree is very easily illustrated--use a tree. So we have a tree with hominid pictures on it. But did you notice that this particular tree looks remarkably like Ernst Haeckel's primate phylogeny tree?

    8:13 -- Establishing the bush theme: Kenyanthropus as a new species apart from A. afarensis. Louise Leakey is featured.

    8:16 -- Obviously Kenyanthropus was a different genus. It has brown fur and Lucy has black fur!

    8:22 -- The Homo erectus model is a little distracting. He looks like an airbrushed white guy. Are these the same actors the BBC used?

    8:23 -- On to Dmanisi. Reid Ferring says there are many piles of round river stones that were probably collected for throwing. They show a couple of hominids throwing rocks at a sabertooth. OK, the skull suddenly fleshing to life in Lordkipanidze's hand is frightening. There's a Hollywood touch.

    8:35 -- Gretchen is complaining about their made-up common names, "Nutcracker" for A. boisei, "Handyman" for Homo habilis. Is there any point to dumbing it down this way? Who do they think is watching?

    8:38 -- Swartkrans burned bones. "If these burned bones aren't the result of a natural fire, then they are the first evidence of a controlled fire by humans." Well, yes, since those are the only two choices.

    8:39 -- RICHARD WRANGHAM ALERT! He's talking about fire IN FRONT OF A SMOKING WEBER GRILL! NOW HE"S CHEWING RAW MEAT! Whoa, man, that grill is smoking up a storm....NOW HE'S BEATING MEAT ON A TREE!

    8:42 -- This is a very clever illustration of the small gut, small tooth, small jaw muscle changes, with body parts computer morphing.

    8:48 -- Lucinda Backwell is talking about A. robustus diet and termites. There is really too much narration here. I would much rather hear the scientists telling us about this stuff. It's not that complicated that it needs to be dumbed down.

    8:55 -- "Lee Berger is on erectus's trail." He's excavating a fossil hyena den. He has a leg bone from an ancient human that he estimates was six feet tall. The amazing thing "is that we think it's a child or female." Berger and Steve Churchill build a reconstruction of the Kabwe specimen. OK, this is nothing new -- it was published in 1923, people! I guess this is just going along with the theme of giving everything a nonsensical name: "Goliath" is the name for Homo rhodesiensis. Nothing against Lee and Steve; I'm sure they think it is as hokey as I do. On the other hand, they did pose in front of a computer at a library workstation to have a mockup of a hominid computer-inserted in the film later....

    9:06 -- Steve Chuchill is measuring the volume and surface area of his H. rhodesiensis mold. He ends up dangling a macabre skin with face painted on. Too cool!

    9:07 -- The voiceover still hasn't called it anything but Goliath, but the hint that it may have went to Europe means that we may be talking about Homo heidelbergensis instead. Hey, I have a suggestion: if the taxonomic names are too complicated, maybe we could call them all Homo sapiens and just talk about the site names?

    9:10 -- Another Flores snippet. The film is really jumping around a lot, but it is clear that the only new thing is Flores, and the rest is just a summary of results from paleoanthropology over the last five years.

    9:15 -- The hobbit skeleton laid out includes a humerus and ulna. The computer-generated hobbits are walking around the Liang Bua excavation like Kevin Pollack and his buddy in "Willow."

    9:20 -- "Goliath!" The reconstruction of Kabwe is 6 foot 4 inches. I especially like the veins popping out on the arms -- he's a pro wrestler! -- and that goes with the theme of him being hot all the time. He didn't have the surface area to get rid of heat in a hot, moist climate, so he had to stay where it was dry. Not sure what the problem is here, exactly; are there no large people living in Africa now?

    9:26 -- Henshilwood at Blombos. Nice shots of the ocean, and reconstruction of the cave during occupation. Good emphasis on the incised ochre chunks. This is a nice part.

    9:30 -- "Equipped with greater brain power, some of us headed to Europe." A suddenly Caucasian modern human comes face-to-face with a Neandertal! BZZZAP -- they're gone!

    9:32 -- Back to Flores: "For thousands of years, modern human migrants likely shared this island with another species: hobbits." Hmmm...could it be that these modern humans made all those tools at Liang Bua? Nope, can't ask that question.

    9:36 -- Commercial break. How is it that they can make "Hogzilla" seem intrinsically more interesting than human evolution?

    9:37 -- Spencer Wells "has made a startling discovery about our struggle to survive: we almost didn't make it." Wells is selling us Toba! Voiceover:"There is no way to know how many of us died...only how many lived." Wells:"It may have taken a global catastrophe to actually kick-start the mind into high gear." OK, the concept du jour is "survivor genes," that were spread around Africa before Toba erupted (they haven't named the volcano for us yet) and allowed some people scattered around Africa (but nowhere else? except for Neandertals and hobbits?) to survive. I guess this is supposed to explain why our genes show geographic diversity dating to the Lower Pleistocene?

    9:42 -- "You don't wear jewelry unless you care about what others think about you, and that is a uniquely modern human trait." Well, and Neandertals....

    9:45 -- Lice genetics. "Body lice live under clothes, not just the rough animal hides worn by earlier humans." What?

    9:51 -- FoxP2: it allowed us to ululate, and that sets us apart from other animals, "more than any other human talent, it is the ultimate power tool."

    9:52 -- RICHARD WRANGHAM ALERT: The grill is still smoking. "Chimpanzees have bouts of violent aggression with each other about 100 to 1000 times more often within their communities." "We have a coalition of the timid." "That kind of killing [of violent people within groups] led to selection against the genes that cause aggression within groups." That, and BEATING MEAT AGAINST A TREE! OK, that's overkill. In any event, this is one of the most sensible parts of the show, and it's only two minutes long. This could be expanded into a half-hour section--how did cooperation arise in ancient humans?

    9:55 -- "Consider the tuber." Lee Berger is mincing, grating, ricing, and macerating potatoes with 18 different kitchen tools. And yet, he isn't in Wrangham's backyard. Hmmm...better to stay out of the SMOKY MEAT WARFARE ZONE.

    9:58 -- Steve Churchill gets the last word: "Wherever we encountered them, we outcompeted them. We made this come to pass."

  • Homo floresiensis on National Geographic Explorer

    Mon, 2005-03-14 16:10 -- John Hawks

    I watched the hobbit episode of Explorer last night. There wasn't that much that was new, but they did present a new John Gurche reconstruction of LB1. As usual, it was a great reconstruction, with a very lifelike end result.

    I was struck by the impression that it looked Indonesian. That is to say, something about the face structure, especially through the nose and eyes, spoke to me of populations in the region today. This impression was enhanced a bit by the coloration, and I can't say how much of it was created by deliberate choices made during the reconstruction process. Some certainly was -- for example, if Gurche had put fur and a chimp nose on like his AL 444-2 reconstruction, it would necessarily have looked more australopithecine-like. But I didn't get the impression that he used anything like Javan tissue depth standards, so I assume that much of my reaction comes from the bone structure itself. In any event, it's far from conclusive, but it did lend credibility in my mind to what Teuku Jacob has been saying about its features.

    The program spent a lot of time with Dean Falk on her brain work. The Brodmann's area 10 story in particular was much clearer across the television than in the Science paper. The frontal convolutions are very large; I'm just not sure what to make of it. In one sense, every anatomical abnormality contributes to the possibility of pathology; in another, it is hard to say that a unique morphology in a fossil organism has a role necessarily like less extreme morphologies in living organisms.

    The Explorer show spent a lot of time on the idea that the hobbits may have been recently extant in the form of the legendary "ebu gogo." My favorite part of the whole thing was when the archaeologists go visit with villagers who tell them a story from the history of their village. In the story, ebu gogo had (a long time ago) attacked the village, and the villagers at the time had driven them up the side of a volcano into a cave and set the cave on fire. Then the show cut to a view of the volcano, with a King Kong-like vibe.

    I could only think, "Why don't they go up to the cave and see if the burned bones are there?!" After all, isn't that what National Geographic is for? If all I wanted a voice-over of the volcano, I could watch the Discovery channel! Come on, people!

    UPDATE:

    My students tell me that this is on again several times this week, so if you missed it the first time, you have a number of chances. Check the listings for the National Geographic channel.

    Also, a reader e-mails a link to
    this story that says they are planning to find and explore the volcano cave:

    Turney said that one of the teamÕs next projects would be to investigate the island folklore, to see if there was any more scientific proof of the hobbits and how and when they became extinct.

    He added that the islanders could not have made up their stories because they were giving detailed accounts before the discovery was made.

    "They said Homo floresiensis were around until 200 years ago, when they stole a baby from the village. The villagers said their ancestors tossed hay and torches into a volcanic cave where the hominids lived and burned them all.

    "We will go back and look for this cave by a village near the town of Bajawa."

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  • The brain of the hobbit

    Mon, 2005-03-07 21:57 -- John Hawks

    News story on MSNBC

    News story on BBC

    Michael Balter story in Science

    Update:

    The original post is listed below. A reader has kindly forwarded the text of the Falk et al. (2005) article, so I add a few comments to the original. The paper is a very nice description of the endocast, with pretty much every detail covered whether in the affirmative or negative. If a similar paper could be published about each of the skeletal elements, they would constitute a very decent monograph. My comments focus on the pathology issue and the analyses of shape.

    As Maciej Henneberg has pointed out online, the study includes a specimen with primary microcephaly as a comparison. Henneberg and others have suggested the specimen may have secondary microcephaly. According to Falk et al. (2005:1):

    The only criterion for secondary microcephaly is an occipitofrontal circumference below -2 standard deviations for age and sex, but these data are unavailable for LB1's population. Unless a Homo erectus-like endocast shape is characteristic of an unrecognized form of secondary microcephaly, we reject the hypothesis that LB1 was a pathological microcephalic.

    And in the Supplementary material:

    Since LB1 lacks the diagnostic head shape associated with [primary microcephaly] and lacks the gyral morphology associated with [microcephaly with simplified gyral pattern], its interpretation as a microcephalic can only be made by claiming that it is a secondary microcephalic. This amounts to saying LB1 is small-headed (literally microcephalic) because it is small-headed, which does not lend itself to hypothesis testing.

    It seems to me this passage pointedly glosses over the troublesome parts of the pathology hypothesis. As defined here, secondary microcephaly does not result in the gross abnormalities in brain shape that can result from primary microcephaly. Instead, it is defined by brain size. Clearly the brain size of LB1 would qualify as microcephalic under this definition -- even if it were a member of a Homo erectus-like population.

    So what response is there to this? Firstly, we don't know what brain size the rest of the LB1 population had. If they were all small like LB1, then clearly that specimen can't be microcephalic. And secondly, LB1's endocast is abnormally-shaped; it is shaped just like a Homo erectus endocast. If secondary microcephaly doesn't result in abnormal brain shape, then it certainly can't produce a Homo erectus-shaped brain.

    I don't know about anyone else, but that argument doesn't satisfy me. Basically, what I wrote below still holds, and I would suggest a working relationship between a pathologist specializing in brain disorders and a paleopathologist who can give some context on the ways that Stone Age lifestyles can alter the characteristic symptoms of developmental abnormalities.

    Endocast shape

    Falk et al. (2005) provide a series of metric comparisons to give an idea of the similarities in endocast shape between LB1 and other fossil hominids and extant hominoids. The major method of comparison is by principal components analysis, performed upon endocast ratios and/or measurements. In a first analysis, the gross measurements of size (length, breadth, height, and frontal breadth) were tabulated into six bivariate ratios, to which principal components analysis was applied. The second principal components analysis was performed on six measurements of the endocast base.

    The reason for doing a PC analysis of ratios escapes me entirely, since there is no information in the four ratios that is not already in the measurements. One possible justification is to discard information, with the notion that ratios will be scale-free. But several of these ratios appear to be quite strongly correlated with cranial size. And there are only three important PCs for a four variable analysis. At any rate, the second PC in this analysis is almost entirely determined by the microcephalic, so the inclusion of that specimen really dominates the overall variation in the samples. Meanwhile, within-population variability is essentially assumed away by the use of population means for humans and chimpanzees instead of real data. In the end, the analysis appears to show that LB1 is most similar to ... the Black Skull! And next most similar to ... chimpanzees! In my opinion, this analysis isn't telling us about anything other than cranial size -- WT 17000 comes out as similar because it is the most similar in size (410 cc).

    The second analysis is the one that places LB1 near humans. Again, this is a PC plot based on ratios, in this case including some values that express the difference between two linear measurements as a ratio with a third linear measurement. LB1 is similar to Homo because of the third PC, which is loaded heavily on the distance to the olfactory bulb from the rostral end of the endocast, and the distance between the rostral and caudal ends of the olfactory bulbs. The reason for this similarity is not obvious to me, but it may be important. In any event, it would help to have ellipses of real data instead of just species means, so the variability in the values could be evaluated.

    Cognitive capabilities

    The lede of the story is the idea that the convolutions on the endocast of LB 1 show that its brain may have had relatively advanced cognitive abilities. In particular, the temporal lobes are relatively large, and the frontal lobe is fairly strongly convoluted. Dean Falk says that the greatest convolutions correspond to Brodmann's area 10, "which is expanded in modern humans and is involved in undertaking initiatives and planning future actions -- key components of higher cognition" (Balter 2005:1386).

    According to the story:

    This enlarged area suggests that the little Flores people may well have been capable of creating the stone tools that were found near them, which are more typical of those made by prehistoric modern humans than earlier hominids including Homo erectus. "The real take-home message here is that advanced behaviors, like making sophisticated stone tools, do not necessarily require a large, modern, humanlike brain," says [Fred] Spoor. "It can be done by reorganizing a small brain, with convolutions and rewiring, and this goes to the heart of our understanding of human evolution." (Balter 2005:1386)

    The idea that there are huge frontal convolutions here that are absent in H. erectus certainly is not evidence of cognitive function. That is to say, if they are new in this putative species compared to its ancestor, then they cannot be said to be homologous with modern human frontal convolutions, which means we can conclude nothing about their function. If, and that's a big if, the brain actually shrank from a larger brain in an ancestor species, then to maintain the same function it might well have increased in convolutions, thereby retaining a more similar surface area (and thereby neurons) with respect to volume. These convolutions would not attest to advanced cognitive skills, except in the sense that they might be beyond those expected for a 380 mL brain.

    For me, the key facts here are the ones that are missing. There is no suggestion that Broca's area was evident. Considering that KNM-ER 1470 has a pronounced Broca's area, this is potentially important. Endocasts have little to say about brain function in the first place, but this endocast in particular has little to set it apart from any early hominid.

    UPDATE: Falk et al. (2005:2) say this about Broca's area:

    [W]e decline to identify rami that border the human pars triangularis (part of Broca's area) on the left, although the general morphology in this region would be consistent with their existence.

    No smoking gun, in other words.

    Of course the key evidence that the Flores hominids had advanced behavior is the archaeological record of that behavior. But there really is no reason to think the archaeology at Liang Bua was made by the hominids in the cave (even if they all represent the same population). The tools really are more typical of those made by modern humans. And there is every reason to think that by 18,000 years ago (and quite probably by 70,000 years ago or earlier) there were modern humans on Flores. There were modern humans in Australia by 50,000 years ago, and modern humans in island Melanesia by 30,000 years ago -- both places reached by oceangoing boats. In this context, it is extraordinary to suggest that the modern humans weren't responsible for the modern human-looking tools. So the archaeology is far from evidence of cognition for the LB 1 individual or its putative population.

    Microcephaly

    The paper provides a graphic comparison of the LB 1 endocast with the virtual endocast of a modern human microcephalic. They are not the same shape, but they are approximately the same size. The paper argues that this shows that the skull did not have microcephaly.

    Personally, I think this interpretation is premature. Pathologies may affect modern humans in roughly consistent ways, but there is no reason to think they would affect an ancient human skull in exactly the same way. There are just too many potential variables when we turn to humans who did not live a modern lifestyle. We find this with every other kind of paleopathology, and I would expect microcephaly to be no different. Every case may be sufficiently ideosyncratic to defy generalization.

    But we don't even have data about the distribution of brain shapes in modern microcephalics. Microcephaly is not only a disorder of the brain; it affects many aspects of cranial shape. If these are developmentally different to any substantial extent, the brain shape may be radically different. The same is true when we consider artificial cranial deformation -- the gross shape of the brain says little about what most of the genes would have it look like, and a few mechanical factors can greatly alter it. Again, the external shape of the brain just doesn't say that much about its wiring, and we really know too little to say anything with confidence about its development in this case.

    The Balter article quotes Fred Spoor as saying, "Colleagues advocating that [the Flores hominid] is a modern human microcephalic should start publishing hard evidence in peer-reviewed journals to underpin their claims" (1387). I can see this point -- the "put up or shut up" priniciple -- but I just don't think we are there yet. Has anyone involved any experts in human brain pathologies in studying the skull yet? Is there even a single expert on microcephaly who has said anything about the skull? I know enough not to pretend that I can say this is or isn't pathological. I suspect that any qualified clinician would say the same; there is just no telling how microcephaly would manifest in a Stone Age specimen.

    Australopithecines again

    It's my hypothesis, and it won't go away. Here's what Balter writes (1388):

    But the new paper urges consideration of an alternative hypothesis, that a small-brained, pre-erectus hominid managed to get to Flores in the distant past, and then, in a case of parallel evolution with modern humans, evolved a relatively advanced brain on its own. "Some of [the hominid's] traits indicate that the ancestral population may predate Homo erectus," says Morwood.

    I find little to criticise here, except the idea that these hominids were necessarily cognitively advanced. That comes from the assumption that they made the tools, which I cannot justify.

    The main problem with the australopithecine hypothesis is the small teeth, which did have to evolve in parallel with modern humans. But then, they also had to evolve in parallel with modern humans in the case that LB 1 descended from H. erectus, since LB 1 has smaller teeth than any other archaic hominid. Otherwise, it's a good australopithecine -- complete with a broad pelvis, long arms, and small brain and body sizes.

    Now, if somebody would just give me credit for it. I really did publish it first, on this site.

    More on the Flores hominids

  • You heard it here first :: hobbits are australopithecines!

    Mon, 2005-02-21 23:51 -- John Hawks

    This is Richard Roberts in an Australian radio interview (the interview is formatted in one-sentence paragraphs, this is a single contiguous excerpt):

    Let's take a point of argument that this particular individual with a small brain is a microcephalic individual, is such an individual.

    They have other features that indicate they're not suffering from microcephaly, they have unusual tooth structures - three roots to the teeth.

    You find those in three-million-year-old people like Lucy in Africa, that only exist in very early Homo erectus.

    You don't find those with modern humans.

    We don't suddenly develop three roots to the teeth.

    Nor do you suddenly develop long arms if you have microcephaly.

    And that's what the hobbit has, they have slightly longer arming compared to ourselves.

    The pelvis is wider than in modern humans.

    They have very thick eyebrow ridges.

    None of these are features of microcephaly.

    When you look at a complete set of features of the skeleton, one or two of them might be credible as being microcephalic problems, but the rest of them can't be explained by microcephaly.

    If you pick some of the ones like Professor Jacob has done I can understand how he reached that conclusion.

    But not on the basis of all available features.

    In my book, this fits the "quacks like a duck" definition of australopithecines. Nothing really new here (except a confirmation of the second jaw earlier in the interview). It's not clear to what extent these comments really reflect the biologists'; for example, LB1 has no preserved arms, and the radius from the site is not all that long.

    Trawling through the original Nature article, we find these descriptions of australopithecine-like similarities.

    There is a strong posterior angulation of the symphyseal axis, and the overall morphology of the symphysis is very similar to LH4 A. afarensis and unlike Zhoukoudian and Sangiran H. erectus. (Brown et al. 2004:1058)

    The femur shaft does not have a pilaster, is circular in cross-section, and has cross-sectional areas of 370 mm2 at the midshaft and 359 mm2 at the midneck. It is therefore slightly more robust than the best-preserved small-bodied hominin femur of similar length (AL288-1). Distally there is a relatively high bicondylar angle of 148, which overlaps with that found in Australopithecus (1059)

    .

    I would add to these the prominence of the anterior superior iliac spine, and I would quadruple the weight of the brain size in the decision--I just can't see a Homo-like brain size reducing to the smallest known for any hominid as a consequence of dwarfism.

    Against these, we have a number of Homo-like features.

    Although LB1 has the small endocranial volume and stature evident in early australopithecines, it does not have the great postcanine tooth size, deep and prognathic facial skeleton, and masticatory adaptations common to members of this genus. (1060)

    But all of these specifically Homo-like similarities are problematic, because they all are correlated with a single feature: dental reduction. And several of these features are not shared with the members of early Homo to which the specimen is proposed to be related.

    The tooth sizes of the LB 1 specimen are generally shared with humans. This means, significantly, that they are not synapomorphies of early Homo--it would take nearly as much change to generate this pattern from an early Homo dentition as from an australopithecine or habiline.

    I haven't made up my mind entirely, and much of my consideration runs with the brain size. Again, I would say that pathology must be rejected for the brain size before turning to other hypotheses. But the recovery of additional similar specimens would make pathology seem infinitesimally unlikely as an explanation for all of them. We aren't there yet, but we must be on the cusp of it. A divergence date from mtDNA would help a lot.

    More on the Flores hominids

  • Can somebody find these hobbits a mommy?

    Fri, 2005-02-18 17:51 -- John Hawks

    More on the evolving story of the hobbit remains in
    this story (smh.com.au). Like most custody battles, the fight over these little guys is burning a lot of people. I don't really have a comment, it's just interesting the way the wind is blowing.

    Notice at the bottom that a sample has been sent to the
    Max Planck Institute for DNA recovery.

    In light of recent comments about DNA contamination, I'm now doubtful this will achieve a meaningful result. Consider the possibilities:

    1. The hobbits have only modern human sequences. If this result could be authentically shown to come from endogenous DNA, then this would show that the Brown hypothesis about island dwarfism was wrong, and this indeed was a pathological, but otherwise unremarkable, human. But this result would almost certainly not be accepted, because the modern human sequences would be argued to be contamination. This is a much bigger problem than was usually acknowledged a few years ago, when people maintained that there was some way to authenticate whether sequences were endogenous. Now it is clear that all specimens have substantial modern contamination, and that the vast majority of sequence are of modern origin, even in specimens that actually do preserve ancient sequences. If only modern DNA is found in the hobbits, this will probably be interpreted as contamination whether it is endogenous or not. The only exception to this would be if it could be shown that the hobbit had a sequence that was closely related to some sample found in living Indonesians, but that there was a unique mutation that set it apart, and has never been found. But I am skeptical that even that would be enough; it is very difficult to respond to the argument that a rare sequence might have been present in one of the discoverers, researchers, or others who handled the sample.
    2. The hobbits have racemization and collagen profiles that indicate that DNA should not be preserved. This is probably the most likely result, because Flores seems likely to be a climatic regime that would not facilitate DNA preservation over tens of thousands of years.
    3. The hobbits preserve some sequence slightly divergent from all living people. By slightly divergent, here, I mean around as divergent as Neandertal mtDNA sequences from recent humans. This might seem to be a clear result, but is actually problematic. For example, the Mungo 3 specimen (Adcock et al. 2001b) appears to lie on a clade that is an outgroup to later people, along with a nuclear mtDNA insertion (called a numt) on chromosome 11. But this kind of interpretation faces a lot of potential problems. For example, Cooper and colleagues (2001) argued that the Mungo 3 sequence may actually lie on the human clade, and is associated with the chromosome 11 numt by homoplasy (Adcock and colleagues (2001a) reply to this argument, but it isn't settled). The same criticism has been made of the Neandertal sequences by Gutierrez and colleagues (2002): namely that these actually lie inside the human clade. It would appear that the degree of parallelism among mtDNA control region sequences is so high that most ancient human specimens will suffer from this problem. This is above and beyond the possibility that an ancient sequence may look unique purely because of imperfect preservation and resulting spurious genetic changes (Caldararo and Gabow 2000). And no close genetic difference can escape the criticism that recent human mtDNA has been subject to recent positive selection. If this were true, then a wide variety of genetic sequences may have been common within the human population before the selective sweep, including the Neandertal sequence, the Mungo 3 sequence, the chromosome 11 numt, and any putative Liang Bua sequence. In short, a closely related sequence to humans would not settle the issue of Homo floresiensis, even if it were basal to the clade including all living humans.
    4. The hobbits preserve some sequence radically divergent from those of all living people. I view this as a relatively unlikely result, but would be expected if indeed these hominids descended from some very early human or australopithecine lineage. In this event, the divergence between Liang Bua and humans would be greater than (and perhaps substantially greater than) the difference between humans and Neandertals. The date of such a divergence is very likely to be between 1 million and 2.3 million years ago, considering that human presence on Flores began by around 900,000 years ago (Morwood et al. 1998), and any extra-African excursions by early Homo or late Australopithecus probably occurred after the origins of stone tool manufacture. The date might therefore be substantially informative about the relationships of early humans and australopithecines, depending on what it turns out to be. But again, I regard this result as by far the least likely, and I think it is much more likely that the DNA survey will be entirely uninformative about the relationships of the sampled specimen.

    References:

    Adcock GJ, Dennis ES, Easteal S, Huttley GA, Jermiin LS, Peacock WJ, Thorne A. 2001a. Human origins and ancient human DNA. Science 292:1655-1666.
    Science

    Adcock GJ, Dennis ES, Easteal S, Huttley GA, Jermlin LS, Peacock WJ, Thorne A. 2001b. Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins. Proc Natl Acad Sci U S A 98:537-542.

    Brown P, Sutikna T, Morwood MJ, Soejono RP, Jatmiko, Saptomo EW, Due RA. 2004. A new small-bodied hominin from the Late Pleistocene of Flores, Indonesia. Nature 431:1055-1061.

    Caldararo N, Gabow S. 2000. Mitochondrial DNA analysis and the place of Neandertals in Homo. Ancient Biomol 3:135-158.

    Cooper A, Rambaut A, Macaulay V, Willerslev E, Hansen AJ, Stringer C. 2001. Human origins and ancient human DNA. Science 292:1655-1666.
    Science

    Gutiérrez G, Sánchez D, Marín A. 2002. A reanalysis of the ancient mitochondrial DNA sequences recovered from Neandertal bones. Mol Biol Evol 19:1359-1366.

    Morwood MJ, O'Sullivan PB, Aziz F, Raza A. 1998. Fission-track ages of stone tools and fossils on the east Indonesian island of flores. Nature 392:173-176.
    Nature

  • The Liang Bua debate, continued

    Sun, 2005-01-16 20:38 -- John Hawks

    References:

    Vidal, John. 2005. "Bones of contention." The Guardian January 13, 2005.
    Guardian online

    Wong, Kate. 2005. "The littlest human." Scientific American 292(2):56-65.

    Two current articles examine the Flores questions from the metascientific angle.
    The first, from the Guardian includes this: "But every major find has a backlash, and in this case a fierce, high-level challenge has come from academics in several countries." The leader of the challenge is of course Teuku Jacob, who now supervises the fossils and has publicly claimed that they may represent a dwarf, and certainly belong to our own species. This article also contains more fresh material to digest, concerning the present status of the remains and the debate emerging from them.

    Kate Wong's article in Scientific American is perhaps the best summary of what has been found and the hypotheses presented to date. I suggest it strongly to anyone wanting to get up to date. It includes a great background to the discovery from the perspective of the Australians (although not the Indonesians who actually did the finding, who haven't been interviewed by anyone that I've seen). The most interesting new thrust to the research covered here is the speculation about the brain and intelligence, discussed below.

    The Jacob angle

    The piece in the Guardian reads as a defense of Jacob, and he deserves one after the media treatment he has received to date. Here is one detail:

    But he is keeping the latest Flores find in a safe in his steel-doored vault. Like all other major finds made by the department of archaeology, the bones were sent to his laboratory. He did not - as the press have said - kidnap them. "They even gave me the money for the transport."

    According to this article, Jacob has arrived at the view that LB 1 is a microcephalic pygmy. This conclusion is supported by the observation that pygmies are common in the region today, may have been more common in the past, and the possibly high frequency of secondary microcephaly, induced by nutritional deficiency or other non-genetic factors. The article also cites Alan Thorne on this idea. Also, Jacob believes the skeleton to be male, leading to an impression of robusticity in its small size that may mislead toward an identification with archaic humans.

    The ebu gogo angle

    Both the stories feature the presence of a local myth about small hairy creatures that live in the forest and shy away from human contact. The creature is called ebu gogo, translated as "the grandmother who eats anything" (Wong 2004:58). This has clearly become the sensationalist perspective on the story: the hint that sometime in the recent past the ancient H. floresiensis population still existed and that historic peoples encountered it.

    It's certainly a colorful way to start an article, and both use it mostly for flavor. The Vidal article does create an interesting dualism between the local myths of the small creatures and the current presence of some very small people, with the latter symbolizing the idea of an extinct species and the former representing the possibility of genetic input from the ancient people into the living population of Flores. Of greater concern is the cryptozoological bent behind the idea that some small number of the tiny hominids might still be there to be discovered in some Floresian forest.

    The multiregionalist angle

    In the Guardian article, Richard "Bert" Roberts is quoted as saying this about the critics of the H. floresiensis idea: "All ... are supporters of the multiregionalism evolutionary model ... This discovery would destroy their theory. It suits their purposes very nicely [to oppose Homo floresiensis]."

    Is it true? Is this a conspiracy of multiregionalists bent on defending their theory? It certainly is true that Maciej Henneberg and Alan Thorne have written supportively of multiregional evolution. But then so have I, and I'm not part of a cabal bent on discrediting pygmy hominids. I think there may be a certain skeptical frame of mind that connects different theories in this way: as for myself, I am pretty skeptical of about anything. Part of that skepticism is directed toward genetic arguments for Out of Africa, and that certainly trends me toward multiregional evolution. But a broader part is directed toward almost every simple answer, which is a great aid to my work.

    Does the existence of Homo floresiensis discredit multiregional evolution? As far as I can see, there is little relationship between the two. Suppose that an isolated population of humans existed on an island for large parts of the Pleistocene, never contacted populations elsewhere until protohistoric times, and had become a distinct species. What about that would suggest that other human populations had become reproductively isolated, failed to interact with each other across continental landmasses instead of permanently isolated islands, and thus became multiple hominid species?

    Now there is a very indirect argument to be made, which is that one case of a distinct hominid lineage within the last two million years increases the prior probability of other distinct lineages within that timeframe. In other words, H. floresiensis does not serve as direct evidence against multiregional evolution, but it does tend to increase our reasons to think that another hypothesis might be right. I think that considering the uniqueness of the situation on Flores, that this argument is far too indirect to have any relevance to the multiregional vs. Out of Africa debate. Or more correctly, it has exactly the same relevance as every other signpost along the bush vs. ladder continuum, which is pretty much zero.

    The only morphological evidence that has relevance is evidence of gene flow among human groups at certain times. If Teuku Jacob is to be believed, the LB 1 skull has features that align it with recent Indonesian peoples. If this is true, then clearly the most likely hypothesis is that the skeleton simply is a modern human with an unusually small body and brain size. Now, this wouldn't be strong support for multiregional evolution, since the skeleton is only 18,000 years old and therefore significantly postdates the movement of modern humans into the region.

    But then, this is one of the underappreciated aspects of the story: by 18,000 years ago modern humans were in the region sailing among the islands of the Indonesian archipelago, to Australia and New Guinea, and to further out island Melanesia, the Philipines, and Okinawa. In other words, maritime technology had made possible the colonization of islands out of sight of each other over significant ocean crossings, and this technology had been sustained since at least 30,000 years ago and very possibly as early as the habitation of Australia. In this context, it seems certain that the archaeological remains in the cave were left by modern humans. The only remaining question is whether the fossil remains were themselves modern or instead represent a different extinct species.

    What about the brain?

    The Scientific American article goes into more detail about the small brain problem than any other published account. The main question is whether a small brain--remember, the smallest known for any hominid--is capable of producing the material culture recovered from Liang Bua. The article has informative quotes from several people, some think that it's impossible for H. floresiensis to have made the tools (Richard Klein), others think it's a question of brain organization instead of brain size (Richard Potts).

    It is important to separate the brain size issue from the species issue when talking about behavioral capacities. For example, applying the example of the smart humans with small brain volumes is a good reminder of why brain size isn't everything, but that reminder is applicable only within our own species. The fact that some modern people behave normally, or even exceptionally, despite having very small brains is possible because they are humans and operate within the context of human culture. If LB 1 was a modern human with microcephaly, this example should clearly apply--the individual himself (or herself) may well have been capable of tool manufacture and other foraging-related cognitive tasks in addition to social participation, because his or her survival in a modern human population would be impossible without mastering relatively challenging cognitive social interactions.

    But just because some modern humans behave in complex ways using only the brain size of an early hominid does not mean that early hominids could interact in ways like modern humans. For ancient human populations, we may assume little or nothing about cultural systems and the ways they may have influenced cognition. It is certainly unlikely that a population of small-brained hominids could have developed cognitive skills equal to modern humans without corresponding increases in the size of the brain. Presumably these hominids would have been under selection for cognitive skills. Thus, for these skills to increase without a corresponding increase in the size of the brain would require that the skills be uncorrelated with the size of the brain. We know little about the genetic basis of cognitive traits, and less about those traits that are of empirical interest for the Flores hominids, such as tool manufacture and Stegodon hunting. But intelligence is strongly correlated with brain size within living human populations, despite the existence of very smart small-brained people in all populations.

    Thus, although brain size is not destiny for the individual, for the population it serves as a fairly potent marker of evolutionary forces acting to increase cognition. If LB 1 was representative of a small-bodied, small-brained population, we can say with confidence that it was not a tool-using hominid.

    More on the Flores hominids

  • "Out of Africa" jumps the shark?

    Sun, 2005-01-16 20:33 -- John Hawks

    The December 2004 Discover magazine ran an article called "The hidden history of men" covering Spencer Wells research into ancient migrations from Y chromosome evidence. In the February 2005 issue, there is a letter to the editor about the article. The letter asks a very reasonable question about the colonization of the Americas: if genetic evidence excludes a date earlier than 20,000 years ago for the arrival of the first humans, then what are we to make of even older archaeological sites-as ancient as 50,000 years ago?

    The magazine runs a reply by Spencer Wells that is a model of creative thinking. He divides current opinion on the initial habitation of the Americas into two camps:one camp favoring a settlement from Siberia within the past 20,000 years, and another suggesting an earlier migration as early as 40,000 years ago. He then argues that any sites as early as 50,000 years ago probably are not evidence of human habitation, but instead are evidence of natural processes-in other words, they can't be real archaeological sites.

    But in the event that the sites are documented as being real evidence of human activity, Wells has another option. He suggests that the sites may be evidence of the activity of an earlier human species, not related to living Native Americans. Presumably this ancient species would be a descendant of Homo erectus, as has been suggested for the dwarf hominids from Flores:

    H. erectus was primarily a tropical or subtropical species, and there is no evidence suggesting that it ever managed to live in the arctic. Perhaps one day we will find the remains of a subpopulation that adapted to life in northern latitudes in the same way that Neandertals did in Europe, leaving them poised to make the leap into the Americas. . . . The genetic evidence we have is clear: all non-Africans came out of Africa within the past 60,000 years, and the ancestors of today's Native Americans entered the Americas within the past 20,000 years. If there were other hominids living here when modern humans arrived, they must have died out.

    Wells oversimplifies the current diversity of opinion on the origins of Native Americans, but this kind of simplification is understandable in a short reply to a letter. He eliminates discussion of the Clovis-first school of thought, but today this hypothesis is in decline. He also omits discussion of whether migrants came only from Siberia or whether they also came from other parts of the world: in particular other parts of Asia or Europe. In my view these hypotheses are not especially likely, and they rely either on older genetic evidence that is now equivocal, or archaeological or anatomical resemblances that may reflect similarities other than close relationship. But even so, it is fair to say that there is more than a two-fold division of opinion on the issues.

    Of greater concern is his simplification of the genetic evidence for migration time. He is correct that the Y chromosome supports a relatively recent entry into the New World-with the youngest haplotype shared by both Asians and Native Americans appearing to give a time bracketed between around 15,0000 and 12,000 thousand years ago. This is in fact the strongest genetic evidence about the date of movement of people into the New World, with other genes much more equivocal about the date. Researchers of mtDNA have suggested a much earlier date of entry, or an earlier population expansion, while examination of other nuclear genetic evidence has been less informative. So it is fair to say that the genetic evidence does support an initial habitation after 20,000 years ago, but the strength of the evidence leaves something to be desired-certainly if it were compared to archaeological evidence for an earlier entry. The problem with a hypothesis of an earlier habitation is clearly that the archaeological evidence for it is weak.

    So where does Wells get his idea about the survival of Homo erectus and its habitation of the New World? Clearly if he is unwilling to abandon the assumption that human genes document a movement out of Africa within the past 60,000 years, he has little choice. Certainly humans could not have reached the New World so quickly after their origin in Africa. But Wells it is wrong to be so confident about this date. He appears to have a sort of tunnel vision favoring evidence from the Y chromosome above all others. What if other genes give an earlier date for movement out of Africa? Could the Y chromosome just have the wrong chronology?

    Or, more critically, what if the Y chromosome is giving us evidence of ancient patterns of natural selection? After all, the distribution of variation of the Y chromosome is clearly a nonequilibrium distribution, in contrast to other nuclear genes. Is there any reason to think that humans cannot have reached the New World as early as 50,000 years ago, and only later have acquired the selected Y chromosome variant? The fallacy is the assumption of identity between the genetic distributions and population distributions. Unless we can put this assumption behind us, we will have no end of wild hypotheses to continue to support it.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

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The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.