john hawks weblog

paleoanthropology, genetics and evolution

laboratory

  • Laboratory inquiry 3: Forensic case

    Sun, 2013-04-21 20:40 -- John Hawks
    Synopsis: 
    Identifying the possible remains of a long-lost aviator
    Amelia Earhart and Fred Noonan

    Amelia Earhart was a famous aviator and pioneer in flight during the 1920s and 1930s. In 1932 she became the first woman to fly solo nonstop across the Atlantic Ocean, and she set an altitude record for flight in an autogyro in 1931. She was well known for her efforts to increase the role of women pilots and publicize the growing importance of airplanes.

    Earhart attempted an around-the-world flight in 1937, taking a tropical route. One of the final legs of this flight was planned from Lae, New Guinea to Howland Island in the South Pacific Ocean, a total distance of 2550 miles. On July 2, 1937, Earhart took off with her navigator, Fred Noonan, to make this flight. Earhart was known to have reached the vicinity of Howland because of her radio transmissions; the U.S. Navy vessel USS Itasca was tasked with communicating with Earhart and helping guide her to her destination. Her final transmission, at 8:43 am, came after more than an hour of searching for Howland on very low remaining fuel.

    After a 17-day search effort across more than 100,000 square miles of ocean, Earhart was given up for dead. However, many people operating shortwave radio sets across the U.S. claimed to have heard faint transmissions from Earhart during this time. Stories about her possible survival have persisted since that time, and archaeologists and aviation enthusiasts continue to investigate her disappearance.

    One of the most striking stories about Earhart's disappearance is that she may have survived the crash of her plane on another island. The most common island mentioned is the uninhabited Nikumaroro island in present-day Kiribati. A skeleton was recovered on this island by British colonial officials in 1940 and sent to Fiji, from where the remains later disappeared.

    The skeletal remains in this lab were recovered from a private residence on Fiji. One or more of them may have been part of the collection curated by the British government on the island, which were sent away for safekeeping during the Second World War.

    Your task is to determine whether these remains may have belonged to Earhart or Noonan. Earhart was 39 years old at the time of her disappearance and stood approximately 5 feet 8 inches (173 cm) tall. Noonan was 44 and stood approximately five feet 11 inches (180 cm) tall.

    Assess the sex, race, stature and age of these skeletal remains, to the extent possible. Can they be the remains of Earhart or Noonan?

  • Laboratory inquiry 2: Mystery fossil

    Mon, 2013-02-18 16:25 -- John Hawks
    Synopsis: 
    Laboratory exercise giving instructions on how to approach the mystery fossil problem.

    In this laboratory exercise, you will work to uncover the identity of a hominin fossil.

    The assignment is quite simple: Your TA will give you a fossil cast to work with. Use what you are learning about the morphology of fossil hominins to determine which species or population may have left the evidence you have.

    This exercise will recur each week in labs 5-7 and you will share your analysis of the evidence on the week of lab 8. As you come each week, think about those parts of the fossil record that can be compared to your mystery fossil. Document each species that you encounter. There is a correct answer, and you will be able to determine it from the anatomy in comparison with other specimens in the lab.

  • The scapula and shoulder girdle

    Tue, 2013-02-05 01:07 -- John Hawks
    Synopsis: 
    Laboratory station explaining the relation of the scapula to locomotor pattern

    The bones that make up the shoulder are the scapula, clavicle and humerus.

    The humerus is the upper arm bone, with a ball-shaped head at the proximal end. The scapula is a flat, triangular bone in humans. The most prominent parts of the scapula are at its lateralmost angle where it articulates with the humerus. Here, the bone bears a shallow, bean-shaped depression called the glenoid fossa. Two projections, the acromial and coracoid processes, extend beyond the glenoid fossa providing attachments for some of the muscles and ligaments of the shoulder and upper arm. The clavicle articulates with the acromial process and extends toward the midline of the torso, with its medial end articulating with the superior part of the sternum.

    Gray's anatomy scapula figure

    What to do: Examine the scapulae of different kinds of primates. You'll find that primates with different locomotor patterns have rather different scapula morphology.

    Monkeys and prosimians that are mainly quadrupeds have relatively long and narrow scapulae. Their shoulders are adapted for forelimb movement anteriorly and posteriorly, but not especially to the side or above the head.

    By contrast, apes and humans have scapulae that are very triangular in shape. The shoulder joint is more mobile in these primates, with the arm able to move freely to the side and above the head.

    The mobility of the scapula is also related to the shape of the trunk. Monkeys have a deep trunk that is relatively narrow from side to side, while apes and humans have a shallower trunk that is wider from side to side.

  • Laboratory inquiry 1: Outgroup

    Mon, 2013-02-04 00:10 -- John Hawks
    Synopsis: 
    A laboratory station giving information about the skeleton of the mongoose lemur

    Your task in the first laboratory inquiry assignment is to develop a hypothesis about the anatomy of the common ancestor of two species of anthropoid primates. To accomplish this, you will need to consider the anatomy of an outgroup, in this case a species outside the anthropoids.

    In the previous laboratory, you were able to examine a skull of a prosimian primate as an outgroup. That can work very well as a way to compare the anatomy and number of teeth and other features of the cranium. But to compare postcranial anatomy you will need to have a complete skeleton of a prosimian primate.

    Unfortunately, we don't have one in the laboratory. Instead, we'll consider some features of the skeleton of the mongoose lemur here:

    Lemur skeleton illustration

    The mongoose lemur has a body between 30 and 45 centimeters long, with a long tail. Its natural habitat is in northern Madagascar, and it also can be found today in the Comoros Islands.

    As you can see from the picture, the mongoose lemur's skeleton has arms and legs nearly the same length, with its legs just a bit longer than the arms.

    The skeleton has 12 thoracic vertebrae and 7 lumbar vertebrae. It also has a long tail.

    The mongoose lemur's scapula is relatively long and narrow. This is contrast to a human scapula, which is triangular in shape with a very broad superior border.

    As you formulate a hypothesis about the anatomy of the common ancestor of your anthropoid species, this information will assist you.

    Study terms: 
  • Laboratory inquiry 1: Reconstructing ancestral primates

    Tue, 2013-01-22 00:41 -- John Hawks
    Synopsis: 
    An inquiry-based laboratory exercise developing tree thinking and testing homology

    Note: This page will change, as your inquiry assignment progresses. Keep checking back here.

    Humans, living apes and monkeys are grouped together as anthropoid primates. The anthropoids share a common ancestor that lived sometime more than 55 million years ago. Paleontologists have found fossils of ancient anthropoids that lived very near that ancestor, and also ancient anthropoids that were related to tarsiers, the next closest branch of the primate phylogeny.

    Among the anthropoids, Old World monkeys (cercopithecoids) and hominoids are closer relatives, and New World monkeys (ceboids) are more distantly related. In other words, cercopithecoids and hominoids form a group that descends from a common ancestor within the anthropoids. We call this group the catarrhine primates.

    In this inquiry-based laboratory project, you will use evidence from two recent primates to infer the probable anatomy of their common ancestor. Together with your laboratory group, you will be assigned two recent primates. Every group will receive a different pair of primates. Some of these will be New World monkeys, some will be Old World monkeys, and some will be hominoids -- that is, apes or humans. The pairs of primates will have one thing in common: their true common ancestors were ancient anthropoid primates.

    How can scientists reconstruct the anatomy of a common ancestor, if they haven't necessarily discovered fossils of that species?

    Every inference about an ancestor is a hypothesis. If we see that two descendants of the ancestor are similar in their anatomy, we can begin with the hypothesis that the ancestor was also the same as those two descendants. For example, humans and squirrel monkeys (a New World primate) both have fingernails instead of claws. We can hypothesize that our common ancestor also had fingernails.

    We test this hypothesis in several ways. We can look at other descendants of the same ancestor. Our common ancestor with squirrel monkeys was the same species as the common ancestor of gorillas and squirrel monkeys, and the same as the common ancestor of baboons (an Old World monkey) and howler monkeys (a New World monkey). Not only humans and squirrel monkeys but also gorillas, chimpanzees, baboons, macaques, guenons, langurs, howler monkeys, spider monkeys, and all other monkeys and apes have fingernails. It seems very unlikely that all these species would have evolved fingernails by coincidence or in parallel with each other. The hypothesis that they inherited fingernails from their common ancestor seems very well supported by this evidence.

    We can also look at species that are more distantly related. Such species give an outgroup for our phylogenetic comparisons. Lemurs, tarsiers, and lorises all have fingernails also -- although lemurs and lorises have instead a single claw, called a grooming claw on one finger. It appears from the evidence that not only the common ancestor of all anthropoids, but also the common ancestor of

    Looking at an outgroup is especially important in cases where two living descendants of the same ancestral species are different from each other. Macaques have a tail. Humans don't. Did our common ancestor -- the ancestor of the catarrhines -- have a tail or not? Looking at just catarrhine species doesn't help us determine whether human ancestors lost a tail or instead macaque ancestors gained one. All living apes lack tails, all living Old World monkeys at least have some tail. But a look at an outgroup helps enormously. New World monkeys have tails, as do lemurs and tarsiers. These outgroups suggest that the ancestors of catarrhines had a tail and that the ancestors of the apes lost their tails.

    For this inquiry, you will consider two major areas of anatomy. In week 2 of the laboratory, you will examine teeth. The number and anatomy of teeth vary among anthropoids, and you will develop and test a hypothesis about the number and anatomy of teeth in the common ancestor of your two primates.

    In week 3 of the laboratory, you will examine body plan, including the number and types of vertebrae and the anatomy of the forelimb. You will develop and test a hypothesis about the body plan in the common ancestor of your two primates.

    You will develop these hypotheses and work as part of a laboratory group. In week 4 of the lab, you will present your findings. One of the best aspects of this inquiry is that different groups may arrive at different hypotheses, depending on which species of recent primates they have examined. As you come together with other groups to discuss your findings, be prepared to compare the evidence from different groups to see whether it confirms or rejects your hypotheses about the common ancestor.

  • A quick start on anatomical directions

    Mon, 2013-01-21 23:57 -- John Hawks
    Synopsis: 
    A laboratory station helping to orient on directions in anatomy

    When talking about bones and teeth, we will need to use several terms to orient ourselves. Some of the terms are obvious, like right and left. Other intuitive terms can fail us, however. For example, we could use higher and lower to refer to parts of our arms, but these terms will be confusing if we lift our arms over our heads. Even left and right can cause confusion: sometimes we need to talk about the left surface of our right arm, for instance. For reasons like these, anthropologists use terms with specific anatomical meanings to talk about the
    positions of bones and features on them.

    Humans are special compared to many vertebrates in having a vertebral axis that runs roughly up and down, at least while we are standing up. For this reason, a long tradition in human anatomy uses these terms:

    Superior: Higher. The nose is superior to the mouth.

    Inferior: Lower. The nostrils are most visible on the inferior aspect of the nose.

    These terms are always used when referring to directions on the head. For the postcranial skeleton, we may also use cranial and caudal, which orient along the axis of the spine. For animals that don't carry their spine in an upright or vertical position, cranial and caudal will always denote the same directions.

    The vertebral axis is only one direction, and our bodies have two additional directions: front to back, and side to side. The terms for the front to back direction are:

    Anterior: Toward the front. The nose is on the anterior side of the head.

    Posterior: Toward the rear. The posterior side of the head is frequently covered in hair.

    Dorsal: In humans, toward the back of the torso. The shoulder blades are dorsal to the ribs.

    Ventral: In humans, toward the front of the torso. The navel is on the ventral aspect of the body.

    In humans, dorsal and ventral are mostly synonymous with posterior and anterior, and the latter terms are often used. In animals with habitual postures that are different than ours, dorsal and ventral retain an anatomical meaning that is unchanged and thus prevent confusion.

    Left and right are absolute terms instead of relative terms. These terms separate one half of the body from the other. The right arm will always be the right arm, and the right lung is right even though it is not as far right as the right arm.

    To refer to the position of a feature relative to another, the following terms are used:

    Medial: Closer to the midline, or dividing line between right and left halves, of the body. The neck is medial to the shoulder.

    Lateral: Farther from the midline. The eye is lateral to the nose.

    The limbs are special cases, because they can move a great deal relative to the spine. For the limbs, anterior, posterior, medial, and lateral are all relative terms used in reference to a particular limb position, called the anatomical position. For humans, the arms are in anatomical position when hanging at the sides of the body, palms forward, and the legs are in anatomical position in a normal standing posture, feet side by side. This means that the pinky side of the wrist is medial, and the thumb side is lateral. Superior and inferior are not used for the limbs at all. These terms are replaced by:

    Proximal: Closer to the point of attachment with the torso. In other words, closer to the shoulder or the hip. The elbow is proximal to the wrist.

    Distal: Farther from the point of attachment. The ankle is distal to the knee.

    Figure illustrating anatomical directions

    These terms can be somewhat confusing to learn, but they prevent a great deal of confusion in referring to bones and their features. The most common ones
    in this course will be anterior, posterior, superior, inferior, medial, lateral, proximal, and distal. Teeth and the hands and feet each have a few special directional terms, which will be introduced along with these anatomical areas.

  • A quick start to the skeleton

    Mon, 2013-01-21 23:29 -- John Hawks
    Synopsis: 
    A laboratory station giving a short introduction to the bones and major parts of the skeleton

    In this course, you will be working extensively with skeletal anatomy. The skeleton provides the primary evidence about our evolutionary history. Skeletal evidence is a limited source of information about biology, but soft tissue evidence is fragile and does not persist long even in curated museum contexts. So a disproportionate fraction of our knowledge about anatomical variation comes from the skeleton.

    Fortunately anthropologists have been very clever in finding evidence that connects skeletal anatomy to behavior and other aspects of biology. Nowadays bone and teeth provide some of the strongest evidence about diet, development and health of ancient human and primate populations. We are even getting new genetic evidence from bone and teeth, including the complete genomes of archaic humans.

    Knowing the skeleton is an essential skill in biological anthropology. Most students will enter this class with a basic knowledge of the bones of the skeleton, and this lab station should help remind you about the parts you probably already know.

    Basic divisions of the skeleton

    The skull, or cranium sits atop the spine. The rest of the skeleton, everything from the neck down, is called the postcranium, or postcranial skeleton

    The skull itself is a complicated structure made up of 26 cranial bones plus the mandible. Except for the mandible, these bones mostly are fused together so that they do not move. The joints between most of the cranial bones are borders where the bones knit together, called sutures. You will learn most of the major bones of the cranium in this class. For now, be sure to remember the mandible.

    The teeth are rooted in the mandible and the bones of the face, called the maxillary bones, or maxillae. The teeth are the only part of the skeletal system that come into direct contact with the environment. They are not bone, but are instead made up of hard calcified tissues called dentin and enamel. The teeth are small but contain a vastly outsized fraction of information because of their long persistence in the fossil record as well as their close relationship to development and diet.

    The postcranial skeleton can be roughly divided into the appendicular skeleton, which includes the arms, legs, hands and feet, and the axial skeleton, which includes everything else.

    The long bones

    The major bones of the arm and leg are called the long bones. These are variations on a common theme: A long shaft with two ends, each of which forms a movable joint, or articulation with another bone or structure. The long bones are all paired bones, meaning that each individual has both a left and right. The anatomy of the each bone enables us to identify whether it came from the right or left side of the skeleton.

    The bones of the leg include the femur, tibia and fibula. The femur is the thigh bone, the tibia is the shin bone, and the fibula is a thin bone at the outside of the leg, mainly noticeable because it forms the outside of the ankle joint.

    The bones of the arm are the humerus, ulna and radius. The humerus is in the upper arm, the radius and ulna are the lower arm bones. These two bones rotate around each other, and are mostly obvious at the wrist and elbow joint. The ulna is the bone that is most prominent on the back of the elbow. The radius is the lower arm bone that lies nearer the thumb, the ulna is nearer the pinky side of the hand.

    The axial skeleton

    The spinal column makes up the connection between upper and lower parts of the skeleton. It is made up of 24 vertebrae in most people. Twelve of the vertebrae connect to twelve pairs of ribs. These numbers vary within humans, and between humans and other kinds of primates, and that variation will be the subject of a lab.

    Each shoulder girdle is composed of the scapula, or shoulder blade, and that clavicle, or collar bone. At the front of the chest is a flat bone called the sternum that connects ribs by means of the costal cartilages.

    Finally, at the lower end of the axial skeleton is the pelvis. This structure is composed of three bones, the sacrum at the base of the spine, and the left and right os coxae or innominate bones. The pelvis is also the subject of an entire lab in this course.

    Practice

    That quick introduction will help to orient you toward the skeleton. Remember that each of the bones can be found within your own body, and for the most part you can feel them from the outside. In total, the human skeleton has more than 206 bones -- more because there are minor bones within tendons that vary in number in different people. Humans are variable, as you will discover during the course of this semester, and not everyone has the same numbers of bones or the exact same arrangement.

  • Mandibles of early Homo and robust australopithecines

    Mon, 2012-11-12 22:36 -- John Hawks
    Synopsis: 
    A lab showing the variation of mandibles in early members of our genus.

    For anthropologists, Africa was a point of exceptional diversity between 2 million and 1.5 million years ago. In both East and South Africa, the fossil record presents evidence of several different hominin species. Some fossils belong to our own genus, Homo, and others belong to robust australopithecines.

    These two forms seem like they should be easy to tell apart. Robust australopithecines had extraordinarily large mandibles compared to living humans. Consider:

    • The main part of the mandible, which holds the teeth, is called the mandibular corpus. In robust australopithecines, this is often extremely thick and tall, with a large distance from the inferior border of the mandible to the teeth.
    • The portion of the mandible that extends upward to articulate with the temporal bone is called the mandibular ramus -- with one on both left and right sides. The mandibular ramus of many robust australopithecines is exceedingly tall, reflecting the very vertically tall faces of these hominins.
    • Robust australopithecines have hugely expanded premolars and molars, and greatly reduced incisors and canines. Early Homo has overall larger teeth than in living humans, but the proportions between the molars, premolars, incisors and canines is very much like people today.

    However, despite these obvious differences, the mandibles of early Homo and robust australopithecines are not always so easy to tell apart. This station has several mandibles from robust australopithecines, mainly from Australopithecus robustus from Swartkrans and Kromdraai, South Africa. There are also several mandibles of Homo erectus here, and a handful of mandibles that are likely early Homo but not definitely H. erectus.

    Can you tell them apart? Try seriating these from most humanlike to most robust australpithecine-like. Is there a clear dividing line between the two, or are there questionable specimens?

  • Mandibles of Neandertals and modern humans

    Mon, 2012-11-12 22:17 -- John Hawks
    Synopsis: 
    Lab station presenting modern human and Neandertal mandibular features

    Many of the differences between Neandertals and modern humans can be found in the face and jaw. Neandertals had relatively tall faces, and substantial prognathism of the midface. To describe more fully: Neandertal faces were tall from the chin to the browridge, and they extended far forward relative to the ears.

    These aspects of facial anatomy are reflected in the Neandertal mandible. The part of the mandible that includes the alveoli for the roots of the teeth is called the corpus. The corpus tends to be thicker and stronger in Neandertals than in most living people. It also tends to be taller, with a greater distance between the inferior border of the mandible and the teeth.

    At the front of the mandible is the mandibular symphysis. In modern humans, there tends to be a projecting triangle of bone, which we call the chin, but in technical terms is known as the mental eminence. Few Neandertal fossils have a chin. Most, like earlier hominins, have a slightly receding mandibular symphysis.

    The part of the mandible that stretches upward from the corpus to connect to the temporal bones is called the mandibular ramus. The shape of the Neandertal tooth rows is basically the same as in the human jaw. But the mandibular ramus is relatively more posterior, so that there is a gap between the third molar and the anterior border of the ramus. This gap is called a retromolar space, and it reflects the strong midfacial prognathism of the Neandertal skull.

    What to do: This station has several Neandertal partial mandibles, from the site of Krapina, Croatia. There is one early modern human mandible from Skhul, in present-day Israel. These are comparable in age (Krapina is 120,000 years old, Skhul is around 100,000 years old). Compare these to the recent human mandibles at the station and consider how these Neandertals fit relative to human variation.

  • Some anthropometrics of the head

    Mon, 2012-11-12 21:49 -- John Hawks
    Synopsis: 
    A laboratory exercise introducing some basic anthropometric measurements

    Anthropometry is the science of measuring the human body.

    In this lab station, you'll measure a few dimensions of your head. There are more than two dozen different standard measurements that anthropologists can take on the face and head. In the past, anthropologists often developed these measurements to study population relationships. These measurements are still used for many purposes, from designing well-fitting military helmets and developing facial recognition systems, to diagnosing developmental disorders in children.

    • The maximum length of the head is taken from the midpoint of the brow, just above the bridge of the nose on the most prominent anterior projection of the frontal bone. This point is called glabella. With one point of the caliper here, the other should find the point on the back of the skull that opens the calipers to the maximum distance.
    • The maximum cranial breadth is taken across the head from side to side, generally above the ears. These points are slightly different in every person, and the key is that the maximum breadth is found symmetrically, with the calipers at right angles to the anterior-posterior axis.
    • The facial height is taken from the most posterior point on the center of the bridge of the nose (called nasion) to the lowest point on the midline of the jaw (called gnathion).
    • The facial breadth is taken across the sides of the cheeks. Like the maximum cranial breadth, move the calipers until the most distant points perpendicular to the midline are found.

    The cephalic index is the ratio of the maximum breadth to the maximum length of the head, taken externally. To calculate this index, divide the maximum breadth by the maximum length, and multiply by 100 (to obtain a percentage).

    What to do: With a partner, measure your head for the four dimensions above and enter them into the spreadsheet.

    The cephalic index has a long history in anthropology. The cephalic index was originated by the Swedish anatomist Anders Retzius, as an instrument to compare the cranial dimensions of living peoples of Europe with ancient skulls. Almost all human crania are longer than broad, and therefore the cranial index is nearly always less than 1. Various systems to divide crania into long-headed (dolichocephalic), medium-headed (mesocephalic) and round-headed (brachycephalic) were once used. The boundaries between these categories were somewhat arbitrary, and sometimes involved as many as eight grades of shape. In later years, the most widespread system of categorization classified a skull with cranial index greater than 80% as brachycephalic, less than 75% as dolichocephalic, and between 75 and 80% as mesocephalic.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.