john hawks weblog

paleoanthropology, genetics and evolution

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  • Coincidence or homology?

    Wed, 2007-06-13 09:54 -- John Hawks

    Remember that story from last month about how fruit flies have some kind of free will because they navigate their flight in nondeterministic directions?

    Only after the team analyzed the fly behavior with methods developed by co-authors George Sugihara and Chih-hao Hsieh from the Scripps Institution of Oceanography at UC San Diego did they realize the origin of the fly's peculiar spontaneity. "We found that there must be an evolved function in the fly brain which leads to spontaneous variations in fly behavior" Sugihara said. "The results of our analysis indicate a mechanism which might be common to many other animals and could form the biological foundation for what we experience as free will".

    Well, here's a passage I happened across this morning in Ontogeny and Phylogeny, discussing the developmental theories of Etienne Geoffroy Saint-Hilaire and his student, Etienne Serres:

    Geoffroy tried to compare the exoskeleton of arthropods with the internal skeleton of vertebrates (relegating insects to a life within their own vertebrae); he sought identityin the location of parts by likening the basic design of vertebrates to a worm turned over (yielding both the happy circumstance of dorsal nerve cords and such problems as a mouth above the brain). Serres agreed, attributing the inversion to a reversed position of the embryo relative to the yolk (1860, pp. 825-826).

    Yet Serres acknowledged the difficulty of comparing adults and set out to prove the unity of plan on another basis: by the fact of recapitulation. The nervous systems of vertebrates and invertebrates have a common design (though this may shock some physiologists since it implies that invertebrates have a will). This identity is not apparent in adult vertebrates, but transient stages of the vertebrate fetus repeat the permanent configurations of invertebrate systems and display thereby a unity of plan (Gould 1977:48, emphasis added).

    I'm not sure why the design of the vertebrate nervous system necessarily yields a "will," but of course the new results show a functional commonality that may reflect the developmental and genetic homologies.

    References:

    Gould SJ. 1977. Ontogeny and Phylogeny. Harvard University Press, Cambridge MA.

  • Linnaeus and species fixism

    Sun, 2007-06-03 00:09 -- John Hawks

    I think many biologists have a pretty vague picture of why Linnaeus was important. To some, he probably seems banal -- how exciting could it be to make all those lists of species, just endless lists, over and over? "Yeah, sure, somebody had to come up with a classification system, but mainly, I'm sure glad it didn't have to be me!"

    Other biologists may view Linnaeus through a lens clouded to some extent by the later development of evolutionary theory. Linnaeus is certainly the most familiar, and possibly the most apt, example of essentialist, typological thought prior to Darwin. His categorizations depended on typological features, and even today definitions of species based on morphological types are often called "Linnean species."

    But several aspects of Linnaeus' writings belie this stereotype. For one thing, especially later in his career, Linnaeus became convinced that new species actually do appear over time, particularly through hybridization. I'll have more on that in a later post.

    Another thing is that before Linnaeus and his contemporaries, people didn't approach biological diversity with an essentialist framework. An essentialist view of species required the assumption that species were fixed, not changing over time. A good source discussing the importance of Linnaeus in the formulation of species fixism is Ronald Amundson's book, The Changing Role of the Embryo in Evolutionary Thought.

    I posted on Amundson's take on Weismann a couple of years ago. I think his take on Linnaeus and species fixism — although short — was the part of the book that struck me the most, mainly because of its heterodoxy in contrast to the historical work of Ernst Mayr and others.

    To begin, he lays out the conventional story:

    Modern narratives of the history of evolutionary biology take place against the background of species fixism. The story goes like this: The historical discovery of evolution was the overthrow of species fixism. From ancient days, Western intellectuals had conceived of a stable and unchanging world that had been created by God in pretty much the condition it now exists. Beginning in the early seventeenth century, traditional beliefs were shaken by a series of challenges to the world's constancy and stability ... [e.g., Copernican cosmology, geological process]. In this narrative, the fixity of species was the last vestige of the stable and unchanging world of the ancients.... Darwin's job was like that of Copernicus — the overthrow of an ancient belief in stability.

    That's the story, but it's not true. The Western tradition was indeed centered on an unchanging world but the fixity of species was not a part of that world. It became widely accepted for the first time both among naturalists an theologians during the eighteenth century, only about a century before Darwin (Zirkle 1951:48-49; Zirkle 1959:642). Carl Linnaeus is widely known for his unequivocal statements of species fiexism and special creationism. It is less widely recognized that Linnaeus was one of the innovators of fixism. Prior to Linnaeus and his botanical colleagues, beliefs in transmutation and spontaneous generation were extremely widespread (Amundson 2005:34-35, emphasis in original).

    For his story, it is important for Amundsen to spends some time describing belief in transmutation, and he devotes three pages to various illustrations of how widespread the belief was. I especially like the following passage on the "barnacle goose," which serves to set the background against which species fixism seems a starkly modern view:

    Even more dramatic transmutations were commonly accepted. To the modern ear they strain the boundary between myth and honest empirical belief. The story of the phoenix was often treated skeptically, but it was no less extreme than the barnacle goose. The Oxford English Dictionary still contains the renaissance term anatiferous: "producing ducks or geese, that is producing barnacles, formerly supposed to grow on trees and dropping off into the water below, to turn into tree-geese" (Hacking 1983:70). Philosopher Ian Hacking uses the term anatiferous to illustrate incommensurability: Wht in the world could those people have been thinking of? But this was an honest factual belief. Raven quotes the sixteenth-century author Scaliger, who reports "as a thing he himself has seen" the stories "falsely told of the phoenix but veraciously of the Bernacle [sic] Goose" (Raven 1953:204).

    Most people, sometime during the slow years of high school biology, learn about Francesco Redi and Lazzaro Spallanzani — Redi put rotting meat in a jar with gauze over the top, proving that maggots don't spontaneously generate; Spallanzani showed that microbes don't spontaneously generate but come from the air and may be killed by boiling. Both, and others such as van Leeuwenhoek, helped to roll back the idea that life was generated from nothing. Still, the problem with refuting spontaneous generation is that you have to be able to see all possible influences. Not until Pasteur was the idea of microbial spontaneous generation finally refuted once and for all.

    Now, to bring the connection to Linnaeus -- Spallanzani's work on boiling and microbial transmission was in the 1760's. Spallanzani also demonstrated that sperm was necessary for reproduction (at least in mammals), performing the first known artificial inseminations (of dogs) -- all this in 1779, just after Linnaeus' death.

    In other words, in Linnaeus' day, spontaneous generation and transmutation were still potent ideas. For animals in particular — not Linnaeus' strong point — they were quite difficult to disprove. Even the causes of reproduction were somewhat mysterious, and what radical transmutations were possible at birth were well-known.

    Botanists, including Linnaeus and his contemporaries, were in a much better position to establish the limits to variation. In this respect, Linnaeus' close focus on the sexual processes of plants and consequent classification were hugely important. Botanists' long experience in plant breeding experiments, and with the relative ease of exchanging seeds and cuttings across Europe, they developed an ability to assess the properties of hybrid strains and varieties -- even more than a hundred years before Mendel.

    Spontaneous generation and transmutation are ultimately linked, since both predict very particular things about reproduction and the nature of parent-offspring resemblances: like from like, and nothing from nothing are joined principles.

    Seen in the context of prefixist theories of spontaneous origins and transmutations, species fixism was a progressive scientific development. Beliefs in spontaneous generation persisted into the nineteenth century, but they were restricted to smaller and smaller organisms as time passed (Roe 1981). Fixism was established for nonmicroscopic plants and animals around 1750, primarily on the basis of plant breeding experiments. Plant variation had been an especially common area of transmutationist beliefs. The careful and controlled breeding programs of Linnaeus and others established fixism among most naturalists (Amundsen 2005:37).

    Amundsen argues for Linnaeus' dual importance -- not only as the innovator of his system of taxonomic descriptions and classification, but also as an experimenter and gatherer of information about botanical forms:

    Linnaeus's fixism, like that of his contemporaries, was based on evidence that had been painstakingly gathered from a vast network of horticultural gardens across Europe. The old transmutationist beliefs in the influences of climate on plant forms had been tested by returning the modified forms to their original locations. The plants then reverted to their original forms. Experiments had been done in the production of hybrids ("bastards"), and the limitations on viability and fertility had made it seem exceedingly unlikely that this was a cause of new species (Amundsen 2005:40).

    This "painstaking" work underlay the basic scientific description of variability under human domestication between Linnaeus and Darwin. Plants might be changed in new environments, and they might be bred or hybridized by humans, but they would revert to their wild, "natural" state. Stamos (2005:91) discusses Linnaeus' view of this reversion:

    Linnaeus, for example, exhibited a belief in the law of reversion in his Critica Botanica (1737) when he wrote that "every day new and different florists' species arise from the true species so-called by botanists, and when they have arisen they finally revert to the original forms. Accordingly to the former have been assigned by Nature fixed limits, beyond which they cannot go: while the latter display without end the infinite sport of Nature" (Ramsbottom 1938: 200n).

    And Stamos (ibid.) quotes further from Jussieu, in many ways Linnaeus' taxonomic successor:

    Jussieu too, in his Genera Plantarum (1789), expresses a belief in the law of reversion. Although a species, he says, "is occasionally subverted for a while by chance or human industry; that is to say, some individuals may vary one from another on account of location or climate or disease or cultivation . . . But these varieties, obeying the law of nature, . . . return to the primordial species, their character restored, if other factors do not interfere" (Stevens 1994: 340-341).

    Hence, reversion served as evidence that species are fixed, and that their variation is transient. Botanical experimentation supported the essentialist view of species, against the tranmutationist view.

    The belief in fixism was important to the classification -- if organisms could readily transmute to radically different forms, then a "natural" classification of them would likely be impossible. Linnaeus' classification was not itself a "natural system", but his hierarchical use of characteristics -- and recognition that reproductive features were the basis of large-scale similarities in plants -- put the outline of such a system in view.

    References:

    Amundson R. 2005. The changing role of the embryo in evolutionary thought: roots of evo-devo. Cambridge University Press, Cambridge UK.

    Stamos DN. 2005. Pre-Darwinian taxonomy and essentialism -- a reply to Mary Winsor. Biol Phil 20:79-96. doi:10.1007/s10539-005-0401-9

    Synopsis: 
    Far from being the backward character often portrayed in accounts of evolutionary biology's history, Linnaeus' adoption of the theory of fixed species promoted the development of theory in biology.
  • "Botanical pornography"

    Sun, 2007-06-03 00:08 -- John Hawks

    Not the work of Georgia O'Keefe, but of Carl Linnaeus according to this NY Times article observing the 300 years since his birth. The birthday was last week, May 23, (taking into account the eighteenth-century shift to the new calendar). So I've put together a few Linnaeus sources:

    First, the Times article (by James Barron) reviews a meeting at the New York Botanical Garden:

    The man who mentioned "botanical pornography" was Robbin C. Moran, a Linnaeus expert and the garden's curator of ferns. He described Linnaeus as an egotist who once declared, "God creates, Linnaeus arranges."

    ...

    Linnaeus is known for some firsts of his own, besides introducing his system of nomenclature for living things. He was the first to use a centigrade thermometer the way it is used today. (Anders Celsius was the first to divide the range between the freezing point and boiling point of water into 100 units, but made zero the boiling point and 100 the freezing point.)

    Linnaeus was also the first person who figured out how to grow bananas in Europe. (Imitating the monsoon climates of Asia, he let the soil dry out, then bombarded it with water.)

    If you're having trouble figuring out the name thing (Linnaeus, Carolus, Carl von Linné, etc.), Wikipedia straightens it all out. And they have this great engraving of Linnaeus decked out in Lapp tucker after a trip to the north:

    That's much more interesting than the usual wigged-out portrait:

    Although he does look like a kindly old fellow there. Bora Zivkovic has a bit more on the lighter side of Linnaeus, pointing out that he was the first to come up with the idea for a floral clock -- a garden arrangement with flowers that open or close at specified times of the day, hence providing a rough (and pretty) timepiece.

    The article in the current National Geographic on Linnaeus, by writer David Quammen, explains a bit more about the "pornography" reference:

    His classification of the vegetable kingdom was more innovative, more comprehensive, and more orderly. It became known as the "sexual system" because he recognized that flowers are sexual structures, and he used their male and female organs — their stamens and pistils — to characterize his groups. He defined 23 classes, into which he placed all the flowering plants (with a 24th class for cryptogams, those that don't flower), based on teh number, size and arrangement of their stamens. Then he broke each class into orders, based on their pistils. To the classes, he gave names suhc as Monandria, Diandria, Triandria (meaning: one husband, two husbands, three husbands) and, within each, ordinal names such as Monogynia, Digynia, Trigynia, therby evoking all sorts of scandalous ménages (a plant of the Monogynia order within the Tetrandria class: one wife with four husbands) that caused lewd smirks and disapproving scowls among some of his contemporaries. Linnaeus himself seems to have enjoyed the sexy subtext (Quammen 2007:84).

    I originally wrote this up last week as part of a much longer post on Linnaeus, and I've decided to break it up into a short series. All the posts will be available here as they appear, but as I write this, this is the only one.

    References:

    Quammen D. 2007. A passion for order. National Geographic. June, 2007, pp. 73-87.

  • Dobzhansky on Weidenreich's species concept

    Mon, 2007-05-21 10:05 -- John Hawks

    I found this passage in the discussion following T. Dale Stewart's paper, "The problem of the earliest claimed representatives of Homo sapiens," from the 1950 Cold Spring Harbor Symposium on Early Man.

    DOBZHANSKY: The great variability of the Neanderthaloids, so ably described by Drs. McCown and Stewart [McCown's paper immediately preceded the one under discussion], bears upon one of the basic problems of human descent. It is now clear that the Neanderthaloids and the so-called sapiens type were at no time two reproductively isolated species, but rather component races of a single species. Some modern populations may carry genes that were present in the Neanderthaloids, and other moderns may not carry such genes. But this does not mean, of course, that mankind consists of races descended from Neanderthaloids and other races which came from the sapiens type contemporaneous with the Nenderthaoids. In general, the old anthropological alternative of monogenic versus polygenic descent of man ceased to exist when considered from the vantage point of the present evolution theory. Different populations (races) of a polytypic species may be descended largely from different races of the ancestral species and may differ in some genes in which these ancestral races differed. And yet, a polytypic species may still evolve as a single genetic system. Favorable mutants or gene combinations arrived at in one part (race) of such a species may, under the influence of natural selection, eventually spread to all other parts and thus become a common property of the entire species. Thus, local autonomy of the gene pools of racial populations does not preclude retention of a basic unity of the species as a whole. I would like to point out that this view agrees quite well with the conclusions reached by the late Weidenreich on basis of purely morphological analysis of pre-human populations. This is worth while [sic] stressing because Dr. Weidenreich has sometimes used expressions which seemed to put him close to the old-fashioned polygenist camp, which he actually rejected absolutely (Dobzhansky, following Stewart 1950:106-107).

    I love these discussions, which often included exactly the people whose opinions you would like to see, and sometimes some surprising ones. For instance, after Dobzhansky in this particular discussion, Joseph Birdsell and Stewart had an exchange about the implications of the fluorine dating of Piltdown for interpreting variability within modern humans (Birdsell's point being that such an apelike jaw must extend the variability of Homo sapiens even further if it is actually recent! Ha!)

    And they often jumped off on tangents, like the Piltdown tangent, which remind you of the other things that people cared about besides the immediate topic. I think it's the closest thing to science blogging that the 1940's and 1950's had to offer!

    References:

    Stewart TD. 1950. The problem of the earliest claimed representatives of Homo sapiens. Cold Spring Harbor Symp Quant Biol 15:97-107, comments following.

  • "Like confessing a murder"

    Sat, 2007-05-19 20:37 -- John Hawks

    The Darwin Correspondence Project has put the text of 5000 Darwin letters online. The NY Times has a number of excerpts. Here's a good one:

    It was at the end of a letter to the botanist Joseph Dalton Hooker, Darwin's closest friend, that, building slowly, he dropped his bombshell of a notion in 1844, 15 years before "Origin":

    I have been now ever since my return engaged in a very presumptuous work & which I know no one individual who wd not say a very foolish one.— I was so struck with distribution of Galapagos organisms &c &c & with the character of the American fossil mammifers, &c &c that I determined to collect blindly every sort of fact, which cd bear any way on what are species. — I have read heaps of agricultural & horticultural books, & have never ceased collecting facts — At last gleams of light have come, & I am almost convinced (quite contrary to opinion I started with) that species are not (it is like confessing a murder) immutable. Heaven forfend me from Lamarck nonsense of a "tendency to progression" "adaptations from the slow willing of animals" ... but the conclusions I am led to are not widely different from his — though the means of change are wholly so — I think I have found out (here's presumption!) the simple way by which species become exquisitely adapted to various ends.

  • Paleontology in the classical world, reviewed

    Tue, 2007-05-01 18:28 -- John Hawks

    Afarensis reviews the book The First Fossil Hunters: Paleontology in Greek and Roman Times, by Adrienne Mayor:

    In Chapter Three, Mayor discusses discovery of bones in the Greek Pre-classic and Classic. Classical scholars should be familiar with these in a different context. For example, the Spartan discovery of the bones of Orestes or the shoulder of Pelops kept at the sanctuary of Olympia. The bones of Theseus were discovered by the Athenians (who also swiped the bones of Oedipus from Thebes). As Mayor points out there was a veritable bone rush at that time with skeletons of heroes popping up all over the place. One of the traits that united these finds was the large size of the bones. The ancient Greeks felt that their heroes were larger in stature than they were. An idea that traces back to Hesiod's Works and Days (where he discusses the five ages of Man) and probably earlier. Over time, according to the ancient Greeks, humans have grown shorter. So when giant bones were discovered - especially those that looked vaguely human - they were interpreted as the bones of Greek heroes. The Roman emperors Augustus and Tiberius also collected bones. What unites a lot of these discoveries is that they come from areas with a lot of fossils - mainly from the Miocene to the present and composed of large megafauna such as mammoths, mastodon, giraffe and rhinoceros to name a few.

    According to the review, the book includes a number of archaeological instances where fossils were found in classical or preclassical contexts. I like Afarensis' point that despite the possibility that such finds guided mythological formulations of ancient giants and the like, classical philosophers "made little mention of such discoveries."

    It makes you wonder what might have been done with the same evidence and the right person. As I was reading the review, I was reminded of Thomas Jefferson and the mastodon, and I went looking up some details:

    In 1784, Jefferson had bravely argued against Buffon's statement that the "mammoth" bones of North America represented the same species as those of the modern elephant. Lacking professional confidence, Jefferson successfully enlisted the support of Ezra Stiles, president of Yale College, but Buffon never wavered in his identification. Ultimately, Jefferson's position was sustained by Georges Cuvier (1769-1832), the brilliant French anatomist, who recognized the bones as those of the mastodon (Coonen and Porter 1976:747).

    In the eighteenth century, those knowledgeable about fossils and anatomy to a sufficient degree to argue such facts were rare. In classical times, such people simply did not exist. Considering the spacing of natural historians in the late eighteenth century (a handful per nation-state), it is probable that no conversation could have been sustained among them without technologies, particularly printing. This is particularly true because the comparative study of such remains requires visual representations -- diagrams at a minimum; ideally casts or original specimens -- which could hardly have been distributed to a critical number of people very much earlier in time.

    It's no surprise that there was some change in mindset between classical times and the Enlightenment. Still, one wonders which innovations were essential to the growth of science. As indicated by the review, classical peoples were evidently interested in ancient remains and even collected them. This acquisitiveness had increased by the eighteenth century -- with a substantial number of avocational antiquarians -- but was hardly different in character.

    The interpretation that ancient mastodons and other such fossils were the remains of an ancient race of "giants" was perfectly straightforward. Although clear evidence is rare, it seems probable that every culture with exposure to such ancient bones arrived at similar mythology-inspired conclusions. In Europe and America, such explanations persisted in Jefferson's day. Even post-Renaissance antiquarians arrived at semi-mythological explanations for ancient artifacts -- for instance, ancient stone tools as "thunderstones." Most straddled the boundary between mythology and naturalism.

    The Enlightenment was the first point at which the tide of science was capable of formulating and testing a coherent alternative. The fossil record provided clear evidence directly on the origins of the earth and its history, and the logical options were clear enough once some connection between rock layers and time was made. As an example, Jefferson already knew enough to predict overkill as a cause for the disappearance of ancient megafauna:

    Jefferson argued that an animal as large as the "great-claw" [the giant sloth] must always have been rare because, he reasoned, the "ordinary economy of nature" would provide "sufficient barriers" to large populations:

    If lions and tygers multiplied as rabbits do, or eagles as pigeons, all other animal nature would have been long ago destroyed, and themselves would have ultimately extinguished after eating out their pasture (Jefferson 1799, p. 256)

    Referring to Africa, Jefferson also claimed that a "new population" -- namely, man -- tended to drive off large animals to the continental interior. He suggested that in North America the pressure of Indian hunters had accomplished the same shift. This analogy was the rationale behind his seemingly whimsical instruction that Lewis and Clark look for signs of the living mammoth west of the Mississippi. Furthermore, Jefferson hinted that, by preferential hunting of these giant animals for an obviously great store of meat and hides, the Indians had probably exterminated them (Coonen and Porter 1976:747).

    Two assumptions had crystallized by the eighteenth century: exponential (or "Malthusian") growth of populations, and the progressive decay of ancient things. Both assumptions are products of everyday observations that may have gotten more ordinary over time.

    Old cities decay and are replaced; old things are buried and unburied. Sometimes the cities themselves get higher as a result -- a fact increasingly known as excavations into the subterranean layers of cities (for foundations and sewers) increased. The classics surely knew these things, but the recognition of old things must have grown as human history piled itself up into deeper and deeper layers.

    The fleeting nature of life and youth was a standard of classical authors, but the disappearance and decay of entire civilizations was particularly part of the Enlightenment zeitgeist. Perhaps it was no accident that the beginnings of paleontology coincided with Edward Gibbon's Decline and Fall of the Roman Empire. Lost signs of ancient things became a staple of early Romanticism, and several scenes in Wordsworth's work wear on the implications of hidden histories. Better-known is Shelley's "Ozymandias," written in 1817:

    I met a traveller from an antique land
    Who said:—Two vast and trunkless legs of stone
    Stand in the desert. Near them on the sand,
    Half sunk, a shatter'd visage lies, whose frown
    And wrinkled lip and sneer of cold command
    Tell that its sculptor well those passions read
    Which yet survive, stamp'd on these lifeless things,
    The hand that mock'd them and the heart that fed.
    And on the pedestal these words appear:
    "My name is Ozymandias, king of kings:
    Look on my works, ye mighty, and despair!"
    Nothing beside remains: round the decay
    Of that colossal wreck, boundless and bare,
    The lone and level sands stretch far away.

    A paleontologist reading the poem may find that it evokes a great fossil eroding from a desert badlands; replace "Ozymandias" with "Tyrannosaurus", and the verse sums up the present-day attitude toward the dinosaurs, far more than that toward ancient Egypt.

    Imperial Rome, at over a million souls, was the apotheosis of classical population growth, but a clear reflection on the implications of such growth may have needed post-medieval mathematical insights or monetary and economic insights. London reached its first million shortly before 1800 -- the first city to do so since classical Rome. By that time, economics and mathematics were ready to infer the consequences of rapid population growth.

    We now know that both insights were necessary for evolutionary theory to emerge, and the strands of evolutionary thought emerged before Darwin in the Enlightenment. This short-term history of thinking in the eighteenth and nineteenth century certainly benefits from considering just how much had changed in human existence since classical Greece and Rome.

    References:

    Coonen LP, Porter CM. 1976. Thomas Jefferson and American biology. BioScience 26:745-750.

  • Vaccinator in chief

    Tue, 2007-05-01 15:42 -- John Hawks

    I was checking on the Thomas Jefferson mastodon story for the last post, and I came across an episode I hadn't been aware of. After Edward Jenner's development of the smallpox vaccine in England, it was Jefferson who advocated its use and spread in America. And more:

    Jefferson became as directly involved as if he had been the health commissioner in a small city. At the time, however, he presided over five million citizens. As a public endorsement of the procedure, he had his entire family vaccinated. But he did not stop there; in 1800 he received cowpox vaccine from [Benjamin] Waterhouse and turned it over to a Dr. Grant in Washington. When it was learned that the substance was inactive (the virus had died), Jefferson himself suggested a new and successful method for maintaining live cultures during shipment (Martin 1952; pp. 39-41).

    He personally directed and encouraged the distribution of vaccine to various parts of the country. On one occasion, when Chief Little Turtle and nine of his braves came to Washington on official business, Jefferson persuaded the entire party to be vaccinated. Beyond that, he sent a virus preparation with them for inoculating others in their tribe. When Lewis and Clark left on tehir long trek into the unknown northwest, they were counseled, "carry with you some matter of the kine pox. ... Instruct them [the Indians] ... in the use of it" (Martin 1952, p. 63) (Coonen and Porter 1976:747).

    If you had a president in a piece of fiction who did this sort of thing, nobody would believe it. Which is sad.

    References:

    Coonen LP, Porter CM. 1976. Thomas Jefferson and American biology. BioScience 26:745-750.

    Martin ET. 1952. Thomas Jefferson: Scientist. Henry Schuman, New York.

  • Neurophilosophy psychologizes Dostoyevsky

    Tue, 2007-04-17 16:08 -- John Hawks

    I really like this Neurophilosophy post on Dostoyevsky's epilepsy. It's a nice piece touching on history, literature, and psychology. Autobiographical details in his novels detail his symptoms, and contemporary accounts from relatives and friends add to the story

    According to biographical accounts, Dostoyevsky suffered no more than 10 attacks of epilepsy in the 20 years following his first seizure, whenever that may have been. Dostoyesky himself stated that his seizures began one Easter night during his exile in Siberia. He had been arrested on April 23rd, 1849, for his involvement with the Petrashevsky circle, a group of liberal intellectuals. After his arrest, Dostoyevsky was subjected to a mock execution, as a form of psychological torture, before being taken to Semipalatinsk prison in Omsk; some researchers have suggested that the trauma of the mock execution is what triggered his epilepsy.

    From 1860, Dostoyevsky recorded the dates of his seizures in a notebook; from that time, up to his death some 20 years later, he documented 102 seizures. This provides the researcher with precise information about the frequency of his attacks, and shows that it was not until 1857, soon after Dostoyevsky's first marriage, that his condition was unequivocally diagnosed as epilepsy.

    I think it is a story very relevant to the nineteenth-century context, which increasingly moved toward acceptance of mysticism on the one hand, and psychological science on the other. And strange blends of the two, manifested by Freud (who makes an appearance in the post) and others.

    Tags: 
  • Hunter-gatherer mortality

    Wed, 2007-03-28 00:19 -- John Hawks

    Kim Hill and colleagues (2007) report in the current Journal of Human Evolution on the mortality profile of recent Hiwi hunter-gatherers. Here is their abstract:

    Extant apes experience early sexual maturity and short life spans relative to modern humans. Both of these traits and others are linked by life-history theory to mortality rates experienced at different ages by our hominin ancestors. However, currently there is a great deal of debate concerning hominin mortality profiles at different periods of evolutionary history. Observed rates and causes of mortality in modern hunter-gatherers may provide information about Upper Paleolithic mortality that can be compared to indirect evidence from the fossil record, yet little is published about causes and rates of mortality in foraging societies around the world. To our knowledge, interview-based life tables for recent hunter-gatherers are published for only four societies (Ache, Agta, Hadza, and Ju/'hoansi). Here, we present mortality data for a fifth group, the Hiwi hunter-gatherers of Venezuela. The results show comparatively high death rates among the Hiwi and highlight differences in mortality rates among hunter-gatherer societies. The high levels of conspecific violence and adult mortality in the Hiwi may better represent Paleolithic human demographics than do the lower, disease-based death rates reported in the most frequently cited forager studies.

    The mortality rates reported for the Hiwi are higher than those for other hunter-gatherers -- especially the African groups (Hadza and !Kung), but not stunningly so. Among pre-1960 Hiwi males, 57 percent could expect to survive to age 15, and 43 percent to age 30, with an average young adult mortality rate of around 2 percent annually. So it is not anything like as high as has been suggested for Neandertals and earlier humans (with annual mortality rates as high as 6 percent).

    The most interesting aspects of the paper are the comparisons between the Hiwi and other ethnographically-known hunter-gatherers. Many of the differences in mortality profiles are attributable to strong cultural differences:

    Cause of death among the groups differs considerably. Disease is an important cause of death in all groups, but represents only 20% of deaths in the precontact Ache, 45% among the precontact Hiwi, and about 75–85% of all Hadza, !Kung, and Agta deaths. Respiratory disease is the main killer of the Ache, whereas gastrointestinal pathogens are most important among the Hiwi and probably Hadza. Among the !Kung, respiratory and gut infections are about equally important. Violence is the major cause of death among the precontact Ache (55% of all deaths) and very important among the Hiwi (30% of all deaths), but notably less important in the two African societies and the Agta (3–7% of all deaths). Indeed, the crude homicide/warfare death rates per year lived are more than ten times higher among the Hiwi and Ache than among the Hadza or !Kung (1/100 and 1/200 per year for precontact Hiwi and Ache, respectively, vs. 1/2500 and 1/3000 for the Hadza and !Kung, respectively). Blurton Jones et al. (2002) suggested that this may be due to the more pervasive effects of colonial governments in Africa and the reduction of intertribal warfare. Even so, within-group homicide and infanticide rates are also much lower among African foragers, suggesting real cultural differences in violence rates.

    The most notable contrast among hunter-gatherer life tables is the overall similarity of child mortality followed by subsequent high mortality of the Hiwi and Agta in adulthood compared to the Ache, !Kung, and Hadza (Fig. 3). The number of individuals at risk in each yearly category and the number of deaths observed have been only published for the Ache and Hadza. Thus, statistical analyses of differences in mortality rates between these groups and the Hiwi can be performed using logistic regression. The results suggest that all foragers are not characterized by a single “typical” mortality schedule. Analyses of the differences for infants, children, adults, and elderly using logistic regression (Table 6) shows significantly lower Ache infant mortality and early-adult mortality relative to the Hiwi, and lower Hadza adult mortality (both young and old) relative to the Hiwi. Particularly striking is the fact that Hiwi early-adult mortality rates are about double those of the Ache and Hadza (Hill et al. 2007:449-450).

    Violence is as important a cause of death as disease for young Hiwi adults, and for infants as well. On page 451, the paper points out that violence and accident cause as many deaths in the Hiwi young adults as occur in most other hunter-gatherers from all causes combined. Hill and colleagues discuss this issue in relation to the possible life history pressures on Paleolithic hunter-gatherers:

    If high mortality, warfare, homicide, and accidental trauma are typical of our Paleolithic ancestors, the Hiwi mortality patterns may be more representative of the past than those derived from other modern hunter-gatherers. If so, several observations about the Hiwi are important. First, conspecific violence was a prominent part of the demographic profile, accounting for many deaths in all age and sex categories. Most of the adult killings were due to either competition over women, reprisals by jealous husbands (on both their wives and their wives' lovers), or reprisals for past killings. The criollo-caused killings were motivated by territorial conquest. Moreover, infanticide (especially on females) constituted the highest mortality rate component of all Hiwi conspecific violence. Second, no predation deaths were reported despite attacks by anacondas, Orinoco caimans, and piranhas, and the presence of jaguars in the area. Accidents associated with the active-forager lifestyle were common, but disease was a more important killer, accounting for nearly half of all deaths. This suggests an adaptive landscape in which success in social relations, competitive violence, and disease resistance are paramount. This may partially explain why many of the genes that appear to have been under strong selection in the past 50,000 years affect either disease resistance or cognitive function (Wang et al., 2006), presumably related to success in an atmosphere of frequent violent social competition (Hill et al. 2007:451).

    The paper also includes a substantial discussion of the implications of high young adult mortality for intergenerational investments, such as grandmothering. This is an important issue, and Hill and colleagues end their discussion with a suggestion that neither the "grandmothering" nor the "embodied capital" models for the evolution of long life spans is sufficient to explain the human pattern. In their view, the key difference between humans and other primates (notably, chimpanzees) is not life span itself, but the markedly lower mortality rate among young adults. This low mortality rate directly causes the long life span (if you don't die young, you'll live long!). Hill and colleagues favor extrinsic factors such as greater protection of children, nursing the sick, and food sharing as possible causes of reduced mortality rates in humans.

    This is a thought-provoking paper, beyond the valuable data, because of its discussion. I will have more to say about the early hominids later on.

    References:

    Hill K, Hurtado AM, Walker RS. 2007. High adult mortality among Hiwi hunter-gatherers: implications for human evolution. J Hum Evol 52:443-454. doi:10.1016/j.jhevol.2006.11.003

  • How modern is "modern tooth development"?

    Mon, 2007-03-26 00:27 -- John Hawks

    Regular readers of the blog will remember previous occasions when I have written about dental development in fossil humans. I am by no means an expert on the topic of dental development. I don't use a scanning electron microscope, or micro-CT equipment. I can recognize perikymata and striae of Retzius, but I've never counted them. I am perfectly willing to accept the idea that other people count them accurately, and even that they can determine their periodicity (that is, how many days of development each line represents).

    In 2005, Guatelli-Steinberg and colleagues showed that the variation in perikymata counts for the anterior teeth of different human populations is more extensive than the differences between living people and fossil humans. I discussed that paper at the time. The perikymata counts in modern human populations are so variable, that the variation in sample means encompasses almost all fossil humans. As I noted, there are few fossil exceptions -- KNM-WT 15000 being the most important. What's worse, the variation among living people encompasses most australopithecine teeth.

    To me, this was the end of the story of tooth development and maturation rates in early humans. Modern human variation encompasses most australopithecines? End of story.

    So I was surprised to see last week's paper by Tanya Smith and colleagues (2007) claiming that the Jebel Irhoud 3 dentition was the earliest example of "modern" human dental development. It seems pretty clear from Guatelli-Steinberg's work that there is no modern human pattern of enamel formation.

    The paper deals with this problem in a surprising way. It just doesn't talk about any of the work showing extensive variation among living people!

    Still, the data are clearly there, reported in Table 2, where it is obvious that there is no significant difference between Neandertals and the modern samples. Moreover, there is no significant difference between Neandertals and Jebel Irhoud 3, except for the lower canine perikymata number, which is even more different between JI3 and the recent Africans!

    The real story of the paper seems to be that Jebel Irhoud 3 has an unusually long period of enamel development compared to most recent people, and also compared to Neandertals and other early humans. But since humans vary in these traits between populations more extensively than fossil Homo, this observation demands an adaptive explanation, not a phylogenetic one.

    References:

    Smith TM, Tafforeau P, Reid DJ, Grün R, Eggins S, Boutakiout M, Hublin J-J. 2007. Earliest evidence of modern human life history in North African early Homo sapiens. Proc Nat Acad Sci USA (online early) doi:10.1073/pnas.0700747104

    Lampl M, Mann A, Monge J. 2000. A comparison of calcification staging and histological methods for ageing immature modern human specimens. Anthropologie (Brno) 38:51-62.

    Guatelli-Steinberg D, Reid DJ, Bishop TA, Larsen CS. 2005. Anterior tooth growth periods in Neandertals were comparable to those of modern humans. Proc Nat Acad Sci USA 102:14197-14202. doi:10.1073/pnas.0503108102

    Guatelli-Steinberg D, Reid DJ, Bishop TA. 2006. Did the lateral enamel of Neandertal anterior teeth grow differently from that of modern humans? J Hum Evol 52:72-84. doi:10.1016/j.jhevol.2006.08.001

    Dean C, Leakey MG, Reid D, Schrenk F, Schwartz GT, Stringer C, Walker A. 2001. Growth processes in teeth distinguish modern humans from Homo erectus and earlier hominins. Nature 414:628-631.

    Ramirez Rossi FV, Bermudez de Castro JM. 2004. Surprisingly rapid growth in Neanderthals. Nature 428:936-939. Full text (subscription)

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.