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paleoanthropology, genetics and evolution

philosophy of science

  • Fifty paradigms of grey

    Sat, 2012-08-18 18:44 -- John Hawks

    The Guardian has a retrospective in honor of the fiftieth anniversary of publication of The Structure of Scientific Revolutions (and you can buy an anniversary edition: The Structure of Scientific Revolutions: 50th Anniversary Edition) "Thomas Kuhn: the man who changed the way the world looked at science"

    Kuhn remained at Harvard until 1956 and, having failed to get tenure, moved to the University of California at Berkeley where he wrote Structure… and was promoted to a professorship in 1961. The following year, the book was published by the University of Chicago Press. Despite the 172 pages of the first edition, Kuhn – in his characteristic, old-world scholarly style – always referred to it as a mere "sketch". He would doubtless have preferred to have written an 800-page doorstop.

    But in the event, the readability and relative brevity of the "sketch" was a key factor in its eventual success. Although the book was a slow starter, selling only 919 copies in 1962-3, by mid-1987 it had sold 650,000 copies and sales to date now stand at 1.4 million copies. For a cerebral work of this calibre, these are Harry Potter-scale numbers.

    The story is a good Sunday read. As far as Structure, Amazon tells me that customers who bought the new edition also were likely to buy The French Lieutenant's Woman.

  • Lacking knowledge

    Tue, 2012-06-26 12:10 -- John Hawks

    Sandra Blakeslee discusses a new book about the process of science: Ignorance: How It Drives Science, by Stuart Firestein ("To Advance, Search for a Black Cat in a Dark Room").

    Dr. Firestein got the idea for his book by teaching a course on cellular and molecular neuroscience, based on a 1,414-page textbook that, at 7.7 pounds, weighs more than twice as much as a human brain. He eventually realized that his students must think that pretty much everything in neuroscience is known. “This could not be more wrong,” he writes. “I had, by teaching this course diligently, given the students the idea that science is an accumulation of facts.

    “When I sit down with colleagues over a beer at a meeting, we don’t go over facts,” Dr. Firestein writes. “We don’t talk about what’s known. We talk about what we’d like to figure out, about what needs to be done.”

    Lurking here is some insight about the process of deciding who gets to do what (and gets funded for it). To be willing to grant money to a project, there is a trade-off between admitting that the answer is unknown, and admitting that the process has a good likelihood of successful outcome. Ignorance has a dual role here: the grantor must admit a certain amount of ignorance, while the prospective grantee must define ignorance in an incredibly narrow way (and ideally demonstrate that it's not ignorance after all).

    In some sense, becoming successful at funding your work requires solving an intricate communication problem where the subject is ignorance.

    I'm a little concerned about the idea (mentioned in the review) of an entire semester-long course titled, "Ignorance". Don't the students get enough about ignorance after one or two class sessions?

  • Science's rules

    Thu, 2010-09-30 08:13 -- John Hawks

    John Wilkins has started a "Scientist's Operating Manual" -- a collaborative project with the aim of writing a short text for non-scientists. I'm pointing to the introductory post, mainly because I really like the Feyerabend quote he uses, from Against Method:

    The idea that science can, and should, be run according to fixed and universal rules, is both unrealistic and pernicious. It is unrealistic, for it takes too simple a view of the talents of man and of the circumstances which encourage, or cause, their development. And it is pernicious, for the attempt to enforce the rules is bound to increase our professional qualifications at the expense of our humanity. In addition, the idea is detrimental to science, for it neglects the complex physical and historical conditions which influence scientific change. It makes our science less adaptable and more dogmatic: every methodological rule is associated with cosmological assumptions, so that using the rule we take it for granted that the assumptions are correct.

    The "pernicious" part especially resonates. Rule-enforcing behavior makes the world safer for the entrenched. It is more notable at the granting level than the publication level.

  • "Accept failure": A New Year's resolution?

    Thu, 2009-12-31 07:30 -- John Hawks

    Jonah Lehrer reports on what happens when scientists see the unexpected:

    According to Dunbar, even after scientists had generated their “error” multiple times — it was a consistent inconsistency — they might fail to follow it up. “Given the amount of unexpected data in science, it’s just not feasible to pursue everything,” Dunbar says. “People have to pick and choose what’s interesting and what’s not, but they often choose badly.” And so the result was tossed aside, filed in a quickly forgotten notebook. The scientists had discovered a new fact, but they called it a failure.

    The description of Kevin Dunbar's work is interesting -- he's a "cognitive scientist" but the work is almost anthropology in the context of scientific labs.

    When Dunbar reviewed the transcripts of the meeting, he found that the intellectual mix generated a distinct type of interaction in which the scientists were forced to rely on metaphors and analogies to express themselves. (That’s because, unlike the E. coli group, the second lab lacked a specialized language that everyone could understand.) These abstractions proved essential for problem-solving, as they encouraged the scientists to reconsider their assumptions. Having to explain the problem to someone else forced them to think, if only for a moment, like an intellectual on the margins, filled with self-skepticism.

    As described in the story, the process of science is like a big noise filter, where theoretically unexpected results are systematically eliminated. I will note the positive aspect: when we find an unexpected result repeatedly, our confidence that it is signal and not noise is vastly higher. So all these attempts to squelch the unexpected create a mental environment in which we can sometimes recognize it.

    Sometimes. But as Lehrer describes, humans are good at conforming their mental world to the expected. Strangest line: "the Aristotelian video with the aberrant balls."

  • Quote: Elliott Sober on the force of selection

    Thu, 2009-05-28 22:05 -- John Hawks

    Elliott Sober's book, The Nature of Selection, discusses the philosophical underpinnings of evolutionary explanation in relation to other sciences. I turn to it once in a while when I need to sharpen a definition, and today ran across this passage (p. 50-51):

    The source laws of physical theory have the austere beauty of a desert landscape. Just four types of force are recognized, and some scientists hope to make this list even shorter (Davies 1979). By contrast, the theory of natural selection exhibits the lush foliage of a tropical rain forest. The physical circumstances that can generate fitness differences are many. Perhaps someday these will be regimented and reduced in number. But at present evolutionary theory offers a multiplicity of models suggesting a thousand avenues whereby the morphology, physiology, and behavior of organisms can be related to the environment in such a way that a selection process is set in motion.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.