john hawks weblog

paleoanthropology, genetics and evolution

open access

  • Ecologists against public access to peer reviewed publications

    Fri, 2012-01-06 14:59 -- John Hawks

    This seems incredible, from Jonathan Eisen: "YHGTBFKM: Ecological Society of America letter regarding #OpenAccess is disturbing".

    Wow -- I am really disturbed by the letter the Ecological Society of America (ESA) has written to the White House OSTP in regard to Open Access publishing.

    ...

    So - the justification here for not making ecological articles available is that they are MORE important over time? So the taxpayers pays for research that is valuable and because it is valuable over time we should make it less freely available? Seriously?

    This next week is an important one for proponents of open access publication and data access, as the White House Office for Science and Technology Policy has requested public comments related to both these issues for federally funded research. I will be posting my letter about data access when I complete it this weekend. I encourage everyone to pay attention and submit a letter if possible. It is dismaying to see professional scientific societies take public stands against making their members' research available.

  • Tenured inertia on publishing

    Wed, 2012-01-04 16:52 -- John Hawks

    Danah Boyd rants "Save Scholarly Ideas, Not the Publishing Industry". This is a well-worn topic here on my blog, but she hits on a useful theme: People with tenure should be leading the charge, but instead it's mainly young scholars who are working for change in the way we publish research and scholarship:

    What pisses me off to no end is that the same Marxist academics who pooh-pooh corporations justify their own commitment to this blood-sucking process with one word: tenure. Not like that is the end of the self-justifications. Even once scholars get tenure, they continue down the same path – even when not publishing with students – by telling themselves it’s for promotion or because grants require it or because of any other status-seeking process.

    WTF? How did academia become so risk-adverse? The whole point of tenure was to protect radical thinking. But where is the radicalism in academia? I get that there are more important things to protest in the world than scholarly publishing, but why the hell aren’t academics working together to resist the corporatization and manipulation of the knowledge that they produce? Why aren’t they collectively teaming up to challenge the status quo? Journal articles aren’t nothing… they’re the very product of our knowledge production process.

    Coming from corporate research, Boyd lacks information on this topic. She doesn't seem aware of the immensity of the open access movement underway or its notable successes. But the comment stream is full of interesting anecdotes and suggestions from academics.

    In my view, substituting open access for closed access journals is a necessary but not sufficient change to our system of academic communication. We need to recognize new modes of publication and dissemination of knowledge that are relevant beyond the academy, and we need to formalize credibility in this new, broader context. That would be truly radical.

    (via Neuroanthropology)

  • How many scholars are copyright pirates of their own work?

    Fri, 2011-11-11 10:00 -- John Hawks

    Ryan Anderson has been interviewing anthropologist Jason Baird Jackson about open access publication ("Anthropology & Open Access: An Interview with Jason Baird Jackson (Part 2 of 3)". I like his description of the coordinated action problem of moving to open access models of publication.

    Most of us do not understand journal business models or how it is that librarians have made so much (expensive) information so easily available to those of us with the luxury of university affiliations. In the face of much confusion and anxiety, just sending our manuscripts to the editors and journals that we know in the way that we have always done has seemed sensible and prudent.

    Related is the situation in which we perceive that we understand the changing landscape better than we do. A clear instance is when we post the final published versions of our writings online because we wrongly believe ourselves to have the right to do so. The increasing prevalence of such accidental piracy fosters the misunderstanding that such practices are the right way to do open access. Such piracy is counter-productive on many levels and is unnecessary given that there are legal and technically better ways to pursue OA.

    I don't make reprints available on my website when I don't have the copyright permission to do so.

    The interview has been wide-ranging so far and this installment discusses the problem of scholarly societies in the open access era. In the old days, societies supported their journals with high member dues, and often required a paper journal subscription with membership. Many societies still do so. Today, there's no reason to ship paper journals to the vast majority of society members. Societies claim that the cost of preparing content for publication is still high, but high-cost pre-publication processing of submissions is transparently unnecessary, considering the number of open access journals run by small societies at relatively low cost, using open access tools.

  • Looking for pseudo-books

    Sat, 2011-11-05 10:04 -- John Hawks

    Jason Baird Jackson posts some insights on how traditional journals can turn to open access tools (if not become open access), and how a startup online journal can strategize archiving for permanence: "Genres Leak, Being a Reflection on Michael E. Smith’s Essay on Semi-, Quasi- and Psuedo- Journals".

    Jackson's post attracted an insightful reply by commenter Barbara, that I want to post in part:

    There are many pseudo-journals and pseudo-books being published in an attempt to mimic the old formats rather than experiment, hoping to pass as scholarship by virtue of looking scholarly. And so long as we weigh scholarship by the pound, so to speak, there will be incentives to populate these fake journals and books rather than create something new and insightful.

    And in so doing, I emphasize that one of the historical aspects of form that online communication makes obsolete is names. How we attribute ideas must change if labels and signifiers are changed. Here I don't have commenters, and that does reduce some confusion that attends authorship.

    Personally I was looking around for how to integrate digital object identifiers (DOI) into online content. Seems to me that integrating online discussion into the academic literature would be done most simply by exploiting the system most widely used for citation tracking in the literature itself -- and that many blogs (including mine) already track. However, adding DOI to content turns out to involve an expensive membership to a cartel run by publishers.

  • Blogs, academic discourse in economics

    Wed, 2011-10-19 08:30 -- John Hawks

    Paul Krugman comments on how the growth in academic blogs in economics is a continuation of publication trends that long predate the World Wide Web: "Our blogs, ourselves".

    First of all, policy-oriented research was never as centered on refereed journals as we liked to imagine. A lot of the discussion always took place via Federal Reserve and IMF working papers, and even reports from the research departments of investment banks. The rise and fall of Fed policy via targeting of aggregates, for example, was not a debate played out in the pages of the JPE and the QJE.

    Second, even for more academic research, the journals ceased being a means of communication a long time ago – more than 20 years ago for sure. New research would be unveiled in seminars, circulated as NBER Working Papers, long before anything showed up in a journal. Whole literatures could flourish, mature, and grow decadent before the first article got properly published

    It's a model worth examining, as Krugman notes the effect of blogs is to broaden the conversation to people who once were locked out of these conversations, but who are nevertheless affected by them.

  • 3D printing, faster, please

    Wed, 2011-10-12 20:51 -- John Hawks

    Casts!

    Origo is still in the prototype phase, but its creators have openly discussed some of the ultimate specs on their Twitter feed and Facebook page, as well as on their main site. We should expect the 3D printer to have a USB port, wireless connectivity, a price around $800, and it will use 3Dtin as its design software. Peels tells me that the printer will be able to produce objects about the size of a “large mug or medium jar.” Depending on complexity, Origo should be able to give kids a small object (like a ring) in a manner of minutes, but larger objects (like a detailed baseball) could take a few hours. Material costs for 3D printing are high (say $40 to $400 a kilo for plastic!) but Peels really wants to bring this down to something very reasonable.

    Please, please, please, I would gladly go to a license-for-unlimited casts model. Open access would be better. I just want the flexibility to shuffle the major casts into multiple lab stations, build kits to send around to schools, and not worry about things breaking. It's just not quite there, yet, either in price or simplicity.

  • What's wrong with anthropology?

    Wed, 2011-10-05 23:31 -- John Hawks

    Anthropologies is an online project organized by Ryan Anderson that brings together voices reflecting the state of the discipline today. The current volume has the theme, "Anthropology with purpose". My essay has riled a lot of people already: "What's wrong with anthropology?"

    Academic anthropology in America is complacent, at a time when budgets are falling, academic departments are being closed, and a larger and larger number of people have become skeptical of the value of science. It's time for an intervention.

    We must change not only for practical reasons but for moral reasons as well. Anthropological research depends on the cooperation, interest and goodwill of many communities, both today and in the past. People do not donate their cooperation lightly. Wherever anthropologists do their work, they are lucky to have the help of these communities of people. Whether biological, archaeological, or cultural, our research relies on unique resources that in many cases cannot be duplicated. We bring these things to light, for the broader appreciation and education of the rest of humanity.

    Having our work read by twenty people is an not acceptable communication strategy. Failure to share results broadly betrays the cooperation of the communities who enable our research.

    I argue for three strategies:

    1. Embrace new forms: use technology to change the way we publish our work.

    2. Defend good science, acknowledging anthropology's unique place.

    3. Empower our students: leverage the incredible value of fieldwork by requiring translational work from the beginning.

    A section from this last:

    Making our students more competitive for non-academic careers does not mean turning our back on what we already do well. Our students learn how to think in ways that other students don't. Fieldwork gives our students tremendous advantages that most industry professionals can only look on with envy.

    We should reinforce those essential experiences and make them greater opportunities for engagement. Why are anthropology students going into the field without contracts to write weekly or monthly about their work? Why do our professional associations do not support themselves by becoming clearinghouses for ongoing field reports? Where are the workshops and press kits that will enable our young researchers to build ties to media and communities outside their institutions?

    I've served up some real red meat in this one, and I've been so heartened to see the growing comment stream. A sample:

    I did an honors thesis on applying an empirical methodology to an ethnographically documented phenomenon that won a university-wide social science prize. I was the kind of promising student which anthropology as a field should be trying to retain – someone with ideas, creativity, and able to produce original research early. While an undergrad, I had every intention of continuing on in anthropology. However, after graduating and sitting down to figure out where to apply to graduate school, I discovered that getting a degree in cognitive anthropology would be a pretty horrible life plan if I wanted to have a career based on my graduate training ... From what is now an outsider perspective, the AAA ditching science in its mission statement suggests to me that I made the right decision. Anthropology has already lost intellectual territory to other disciplines, seemingly without a fight.

    Some great names have already chimed in, and I hope that many more will take the opportunity to join the conversation.

    Synopsis: 
    I link to my essay in Anthropologies, which calls for greater engagement by anthropologists.
  • Will monographs arise from the dead, or eat our brains?

    Sat, 2011-10-01 21:26 -- John Hawks

    Inside Higher Ed reviews and interviews an author who argues that the scholarly monograph shackles academics to an obsolete model of communication:

    So it is strategic that Kathleen Fitzpatrick, director of scholarly communication at the Modern Language Association and a professor of media studies at Pomona College, invokes the living dead early to illustrate her argument in Planned Obsolescence: Publishing, Technology, and the Future of the Academy (NYU Press). The scholarly press book, she writes, “is no longer a viable mode of communication … [yet] it is, in many fields, still required in order to get tenure. If anything, the scholarly monograph isn’t dead; it is undead."

    I agree with this thesis in part. Sixty-dollar monographs are going the way of the thylacine. Locking scholarly content in the tall stacks of university libraries doesn't disseminate it. Peer review no longer improves work to the extent that it's worth locking it up in response. It is ridiculous for anyone to judge the quality of a young scholar's work by the imprint of a "prestigious" academic press. Tenure committees have simply delegated their responsibilities to editors, and the editors do a poor job.

    But I disagree that the scholarly monograph is dead. Personally, I expect monographs to undergo a renaissance as more academics adopt e-publishing. Academic presses affiliated with universities should be going all-digital, and should start massively promoting their back catalogs as e-books at fire-sale prices. The smart ones will take the opportunity to change their agenda, competing to publish new books by a new generation of scholars who are building a broad readership both inside and outside academia. There's no reason why we need to constrain our scholarship to books so boring that nobody wants to read them. Tomorrow's scholars should be engaging with a much broader public than university presses have historically cultivated.

    The stumbling block is that these books still must serve as a guide to the academic quality of young scholars' work. On this count, Fitzpatrick provides some useful ideas about how to build quality scholarship under a more collaborative model:

    The way to make this work, Fitzpatrick says, is to change the currency of scholarly communications from paper to credit. Instead of rewarding faculty for getting a lot of paper published, universities should consider how helpful tenure candidates have been in parsing other people’s articles written and helping others refine their ideas, she says. Journals could help out with this by creating “trust metrics” that cede more weight to academics who consistently give constructive feedback. They could also encourage frequent, thoughtful reviews by making them prerequisites for publishing one’s own work — thus attracting the sort of critical mass of reviewers that Fitzpatrick argues is necessary for successful peer-to-peer review (and which some previous high-profile experiments with the model failed to get).

    Under such a system, faculty members could glide to tenure on the wings of their reputations as positive contributors to the advancement of knowledge in their field — a metric the current “publish-or-perish” model does not adequately represent, Fitzpatrick says. “Little in graduate school or on the tenure track inculcates helpfulness,” she writes, “and in fact much militates against it.”

    Obviously I think this model would be better than our current one. Still, I worry about the actual assignment of credit. Quite frankly, all my writing here has done wonders for my influence, but has had a substantial drawback: Many of my ideas are used by other scholars without credit or citation. We compete for research support, and in that competition I get no credit or acknowledgement whatsoever for any contributions I make. That's a cost I've been willing to pay for what I do, but if we expect more young academics to share their ideas broadly, we're going to need to change the culture of research funding to recognize their contributions appropriately.

    My favorite part of the interview is the last question, which asked Fitzpatrick to give advice about new models of publication to a junior faculty member, librarian, and university provost, respectively.

    Finally, to the provost: understand that scholarly communication is a core responsibility of the university – so fundamental to the university mission, in fact, that it must be thought of as part of the institution’s infrastructure, not as a revenue center. And every university must develop some kind of plan for scholarly communication. If you leave disseminating the work of your faculty exclusively to corporate publishers, corporations will profit from it at your institution’s expense. Instead, invest in the structures that will get your faculty’s work into broader circulation – not least because those structures will help you make clear to the concerned public why the university continues to matter today.

    I'm going to append to this post the first link to my entry in the Anthropologies project: "What's wrong with anthropology?" where I discuss my own perspective on these problems. Needless to say, I think things need to change. I expect the change in scholarly communication to be highly specific to each academic field, as what works for cultural anthropology will not be the same as what works for genetics or English. But new approaches will be digital, and that means a university may find much more ability to support multiple approaches than is possible with print. The tools to support varied forms are already available, if universities would support and extend them, they could capture much of the need for academic communication.

    Synopsis: 
    Making academic writing relevant means abandoning the monograph, says a specialist.
  • The great world CT-scanning tour

    Fri, 2011-09-16 22:24 -- John Hawks

    The international version of Der Spiegel is running an English-language profile of the traveling CT-scan project from Jean-Jacques Hublin and the Max-Planck Institute for Evolutionary Anthropology: "German Scientists Bring Fossils into the Computer Age"

    To show just what the future holds for his field, Hublin crossed the back courtyard of the anatomy institute in Tel Aviv. There, next to the dumpsters, stands a 20-foot (6-meter) container that the Israeli technicians like to smoke behind. The box's exterior gives no hint that it holds a laboratory on prehistoric man unlike any other one in the world.

    This is a topic that should be followed closely by anyone interested in paleoanthropology's future. The article seems to imply that the data are being made freely available, but of course they are not. I am confident that, in the future, all data like these will be openly available, as they are now made routinely available in other fields of science. But for the time being, our field is one of the exceptions - and the closed nature of the data is a serious impediment given the great challenges we face educating the public about human evolution.

    The Spiegel article sets up the politics as a confrontation between Hublin and museum curators:

    Until now, Hublin says, it was usual to handle fossils from the dawn of mankind "like relics or national treasures." Under these circumstances, curators assumed the role of keepers of the Grail.

    In this way, curators were holding on the reins of scientific power. After all, it is vital for researchers to have access to the fossils. "Whoever is denied (this access) will never get anywhere," Hublin says.

    A New Era for Research

    Indeed, Hublin believes having a virtual fossil archive could herald the end of this system. He sees his work as boosting accessibility to the objects and says curators "are afraid of losing control."

    In my experience, the article's frame is overly simplistic. Scans aren't open unless the people who have them make them open. Believe me, if there were a lot of open scans out there, I'd be posting visualizations here on the weblog. Obviously people use funding and position to compete for prestige and control, and their strategies depend on the resources under their charge. When curators or institutions give permission to scan, it becomes a contractual matter. A foreign researcher coming to scan may demand a period of exclusivity, an institution might demand some meaningful local involvement in the research. The ultimate disposition of the data may be of little importance to either party relative to their more immediate needs. I am familiar with cases where scan data were never returned to the institution, despite promises of access, and other cases where institutions have refused to allow scanning because they objected to a long exclusivity period for the scanning team.

    Fossil remains of our ancestors and relatives are national treasures — indeed, even more broadly, they are pieces of world heritage. We have the technology today to bring those extraordinary objects to everyone in the world. So I think its a great shame that the politics of science continues to obscure our fossil record.

    Synopsis: 
    Der Spiegel profiles the Max-Planck CT-scanning trek to Israel, raising the politics of data access.

Pages

Subscribe to open access

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.