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paleoanthropology, genetics and evolution

wolves

  • Was the first dog from the Altaian Upper Paleolithic?

    Sat, 2013-03-09 22:33 -- John Hawks

    A new paper by Anna Druzhkova and colleagues examines the ancient mtDNA sequence of a putative 33,000-year-old dog from Razboinichya Cave in the Altai region: "Ancient DNA Analysis Affirms the Canid from Altai as a Primitive Dog" [1]. The paper's analysis is a simple application of phylogeography, showing that the mtDNA of the Altai dog fits in a clade with a number of pre-Columbian New World dogs:

    The domestication of dogs from the grey wolf is well accepted [1]. However, the timing, location and number of domestication events is still actively debated [2]–[5]. The archaeological record provides unequivocal dog remains beginning about 14,000 calendar years (cy) ago [6]–[7] requiring a domestication that predates agriculture. Putative dog remains ranging in age from 31,000 to 36,000 cy [2] [8]–[9] have been questioned as potentially representing aborted attempts at domestication, or morphologically unique wolves [4]. A full mitochondrial genome analysis of modern dogs suggests an origin in southern China around 16,000 years ago [10], whereas an extensive nuclear genome-wide SNP analysis supports a Middle East and European origin [11], which is more in accordance with archaeological data. Here we isolated, sequenced and analysed 413 nucleotides of the mitochondrial DNA control region from a putative dog specimen dated as approx. 33,000 cy from the Altai Mountains in central Asia. Only a single specimen - namely the Goyet dog (36,000 cy [2]) predates the Altai dog and hence it is thus far the second oldest known specimen assigned morphologically to the domestic dog [8].

    The evidence of dog domestication has developed piecewise over the last several years. A number of Upper Paleolithic skeletal specimens have morphological dimensions inconsistent with wolves, but comparisons of the genetics of recent dogs has tended to argue against such early domestication.

    In the current paper, the mtDNA similarity of the Razboinichya canid and pre-Columbian American dogs is pretty persuasive evidence that this specimen came from an early population ancestral to the dogs of northeast Asia, which would later enter the New World. This paleontological specimen shows that the mtDNA phylogeny of modern-day dogs does go way back into the Late Pleistocene, which argues against a single recent domestication. Still, the mtDNA is not the strongest possible source of evidence, since present-day dogs can be found across many of the clades that include mtDNA from wild wolf populations.

    Curiously, Druzhkova and colleagues did not include the Goyet canids in their mtDNA comparisons. An analysis of 57-bp of the mtDNA of these dogs was carried out by Germonpré and colleagues [2], showing that the Belgian Upper Paleolithic dogs have a diverse range of mtDNA haplotypes, across several clades of the wolf genealogy. The current paper bases its mtDNA cladogram on 400-bp sequences, so they aren't strictly comparable, but it is nevertheless interesting that the other putative early dogs are not part of this clade including pre-Columbian dogs and the Altai specimen.

    The earlier description of the Razboinichya canid by Ovodov and colleagues [3] suggested that the specimen was part of an early domestication event that was "arrested" by the Last Glacial Maximum.

    We suggest that the pre-LGM Goyet and Razboinichya canids are unlikely to be the ancestors of post-LGM dogs. These canids most probably are both “proto” or incipient dogs that did not persist long enough to found enduring lineages, since no putative dog remains have been found at adjacent sites in western and central Europe and in Siberia occupied during the LGM. The ecological changes caused by progressive cooling almost certainly caused social and settlement pattern changes severe enough to have disrupted the domestication process and prevented the evolution of fully domesticated dogs.

    Such a scenario would reconcile the early skeletal evidence for dogs with the conclusion that recent dogs come from a small mtDNA population.

    But I think it's too soon to conclude that today's dogs don't have deeper Pleistocene roots. As zooarchaeologists have been finding more and more possible evidence of dogs, they may be filling in the record (for example, with apparent dogs from the Gravettian Předmostí site [4] and from the later Upper Paleolithic of Kesslerloch, Switzerland [5]). I wonder whether a good actualistic study of dog deaths and remains in small-scale human societies would give rise to clearer expectations about how many dog skeletal specimens we should expect from Upper Paleolithic contexts.


    References

    Synopsis: 
    The record of early dog domestication grows
  • Mailbag: Dogs in Chauvet

    Sat, 2011-06-25 11:25 -- John Hawks
    Love your blog, which I stumbled across while googling for more detail on the wolf tracks in Chauvet Cave. Have been fascinated by this stuff since 1st grade, did fieldwork in high school & college, and now wish I hadn't let the dryness of academia drive me away from anthro back in Ann Arbor (not Wolpoff's fault). I still read around though; loved your take on the Clovis Comet Crap (what suckers the media are), though obviously impact events play a major evolutionary role.

    So anyhow, back to my question. Recently saw Herzog's documentary on the art in Chauvet. Having dabbled in caving during a Peace Corps Guatemala stint, I find it extremely unlikely that a wolf is going to be walking around deep in a pitch black cave by himself. To me this is potentially strong evidence if not downright proof of domestication, but I'm looking for more specifics on track layout (esp. in relation to those human child tracks) and actual location/depth within the cave (to ascertain feasibility of wild vs domesticated access). Do you have anything more on this, or could you point me towards same? Much obliged, tlc

    Thanks for the kind words!

    Pat Shipman has written about this topic quite a lot lately, she has a book out on the history of human-animal interactions. Last year she wrote about Aurignacian-era dog domestication evidence (I linked here):

    http://johnhawks.net/weblog/reviews/archaeology/upper/europe/dog-domesti...

    And I cited some of the original research here:

    http://johnhawks.net/node/1686

    The main impediment to accepting a very early domestication is the genetics; as modern dog breeds don't seem to have such a distant ancestor. But that may be due to recent gene flow among breeds and subsequent selection after domestication. At the very least, domestication was clearly early enough that dogs accompanied people to the Americas before 12,000 years ago.

  • Wolves in coyotes' clothing

    Thu, 2011-05-19 02:58 -- John Hawks

    Razib's post on the genetics of canids ("A map of charismatic canid genomic variation") does a nice summary of a recent paper in Genome Research, by vonHoldt and colleagues [1]. I just want to quickly point out that humans are not the only species for whom we are developing a complicated and relatively well-resolved scenario of population history. Still, the methods used in present-day studies of population structure are really "first-cut" kinds of approaches. The data have reached the point where simple models no longer fit, and that's a good thing.

    Also, there's this:

    Another interesting implication of the possibility of long term hybridization is that some of the distinctive alleles of extinct American wolf populations may now only be found in coyotes, since this species was much better at surviving human encroachment. And if wolves went extinct tomorrow, we could reconstruct them from what we find within coyotes I’d think.

    That gives me the chance to pull out my favorite quote from the famous evolutionary plant biologist G. Ledyard Stebbins [2]:

    We inevitably reach the conclusion, therefore, that introgressive genotypes not only persist indefinitely, but that also, like polyploids, they can migrate far beyond the areas in which they originated, and can actually survive after the non-introgressed parental species has become extinct.

    Theories that predict unknown facts before they can be observed are like uncut diamonds.


    References

  • Mailbag: Coyote attacks

    Wed, 2010-06-02 14:12 -- John Hawks

    Sorry to interrupt the 'all Anthropoid all the time' theme going on lately but I want to get back to a subject we've discussed before (well kind of).

    Coyotes have a record in recent years of attacking and even killing people. Why do we see so few reports of wolves attacking and killing people? Seemingly it would be much easier for them. The 'yotes that killed the girl in Canada went after a full sized adult.

    Perhaps a pack of wolves would leave less evidence?

    I think first you have to correct for the fact that coyotes are around people a lot more. People who have gone places where they are likely to encounter wolves tend to be better prepared outdoorsmen, able to deal with bears.

    But maybe in addition to that, there's a pack hunting advantage. Coyotes hunt independently or in small groups and are apt to be both hungrier and more limited in range due to conflicts with neighbors. Wolves get their risk spread among more group members and maintain larger home ranges.

    I think leopards are also more dangerous to people than lions, may be the same reason.

  • Coywolves

    Thu, 2009-09-24 16:30 -- John Hawks

    Another case of large mammal evolution by introgressive hybridization:

    Coyote + wolf = new breed of predator

    New DNA evidence reveals that coyotes have bred with wolves in the the northeastern United States, turning mice-eating coyotes into much larger animals with a hunger for big prey, such as deer.

    The linked article describes a study by Roland Kays and others, who went looking at the mtDNA of nearly 700 museum coyotes and donated specimens, looking for wolf. When they found it, they were able to correlate skeletal measurements with wolf ancestry and trace the progress of the wolf introgression from somewhere "north of the Great Lakes".

    They hit on some essential points:

    "This is an evolutionary mechanism to generate new variation that can work faster than genetic mutation," added Kays, curator of mammals at the New York State Museum.

    If there's a niche for a more solitary canid predator, larger and more aggressive than coyotes, bringing in wolf genes may be the fastest way to get there.

    This is a dynamic system, caught in mid-transition. The coywolves have not reached any stable equilibrium distribution with coyotes, and the wolf chromosomes have not broken up within the coywolf descendants to allow the dissociation of adaptive from maladaptive wolf genes in the hybrid population. Over the long term, the wolf mtDNA might be lost entirely, if there are any negative epistases between wolf mitochondrial genes and the mostly nuclear coyote genes that interact with them. Assessment of hybridity by mtDNA is conservative (misses hybrids with paternal instead of maternal origin) and temporary (the purely maternal lineage may disappear over evolutionary time due to slightly negative epistasis).

    Other: "Adaptive introgression of coat color in wolves"

    UPDATE (2009-09-24): See also in the mailbag.

  • Adaptive introgression of coat color in wolves

    Thu, 2009-02-05 15:22 -- John Hawks

    Mark Derr of the NY Times reports on a new study showing that black North American wolves got their melanism from dogs:

    In a bit of genetic sleuthing, a team of researchers has determined that black wolves and coyotes in North America got their distinctive color from dogs that carried a gene mutation to the New World.

    The finding presents a rare instance in which a genetic mutation from a domesticated animal has benefited wild animals by enriching their “genetic legacy,” the scientists write in Thursday’s Science Express, the online edition of the journal Science. Since black wolves are more common in forested areas than on the tundra, the researchers concluded that melanism — the pigmentation that came from the mutation — must give those animals an adaptive advantage.

    There are so many examples of this phenomenon in mammals now! This one is interesting because it would have been carried in by early dogs brought in via Beringia -- so it's another case where an intercontinental migration has brought a new adaptive allele that introgressed into a natural population.

    There is also a date:

    Comparing large sections of wolf, dog and coyote genomes, Dr. Barsh and his colleagues concluded that the mutation arose in dogs 12,779 to 121,182 years ago, with a preferred date of 46,886 years ago. Since the first domesticated dogs are estimated to date back just 15,000 to 40,000 years ago in East Asia, the researchers said that they could not determine with certainty whether the mutation arose first in wolves that predate that time, or in dogs at an early date in their domestication.

    This could have been selected in the very earliest domesticated dogs, based on that date. It would be useful to have a number of genomes from ancient wolves to screen against variation present in the wild population around the time of domestication.

    The really cool thing is that we will probably have samples like that within the next several years...

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