john hawks weblog

paleoanthropology, genetics and evolution

metabolism

  • Anthropology 105, lecture 13: Milk

    Mon, 2012-04-09 12:27 -- John Hawks
    Synopsis: 
    A lecture on energy expenditure, costs of pregnancy and lactation, and lactase

    Technical issues caused me to miss lecture 12, which was about metaphyses and the growth of the skeleton, as cues for life history evolution.

    Lecture 13 went into "Milk" as a topic. Lactase persistence comes in at the end as a case of gene-culture coevolution. Most of the lecture covers the concept of energy expenditure, including sex differences in basal metabolic rate and energy expenditure and the energy demands of pregnancy and lactation.

    Study questions: 
    • As humans have come to supplement infant feeding with sources other than breast milk, how has that affected energy expenditure?
    • Does the energy allocation to reproduction explain the difference in energy expenditure between males and females?
    • Are there other kinds of foods that we have special adaptations to digest?
  • Positive selection on killer whale mtDNA

    Wed, 2010-09-08 00:05 -- John Hawks

    I've written about the study of selection on human mtDNA many times, and discussed the signs that Neandertal mtDNA may have disappeared because of selection.

    I love how larger samples are starting to get zoologists to test the neutral hypothesis much more widely. This week, a new paper in Biology Letters by Andrew Foote and colleagues [1] shows that different populations of killer whales. They find possible evidence for positive selection on amino acid-coding variants in cytochrome b in two Antarctic populations.

    Here's the last paragraph of the paper. This isn't totally clear without the context (describing the whale populations) but it gives the best short summary of the complexity that was found.

    Based on morphological differences [21] and reciprocal monophyly of the mitogenome sequences [12], it has been suggested that type B and type C are distinct species. Positive selection on the cytochrome b could therefore be caused by adaptive divergence relating to a combination of variables that influence metabolic requirements, such as body size or diet; type C is a fish-eating dwarf form of killer whale, whereas type B is one of the largest forms of killer whale and primarily feeds upon seals [21,22] (J. W. Durban & R. L. Pitman 2010, unpublished data). However, the amino acid changes in both ecotypes could be the result of parallel evolution owing to environmental conditions such as oxygen concentration or sea temperature. Both type B and type C at least seasonally inhabit Antarctic pack ice, and both have been sighted over-wintering in the pack ice [21]. The third Antarctic ecotype, for which we found no evidence of positive selection, inhabits the offshore ice-free waters during the austral summer and over-winters at lower latitudes [21]. However, the mutations are in the opposite direction for each ecotype, suggesting that divergent evolution may be more likely. The two changes were private alleles within type B and type C, respectively, and neither substitution was found in the reconstructed ancestral sequence (electronic supplementary material), suggesting that each mutation has occurred and become fixed and almost fixed, respectively, since type B and type C diverged from their most recent common ancestor, approximately 0.15 Ma [12]. Therefore, the ancestral form may not have been subject to the same selective pressures.

    Some thoughts:

    1. We know how well "reciprocal monophyly" has turned out for human and Neandertal mtDNA genomes...

    2. It's interesting how much play there seems to be in the mitochondrial genome. Lots of ways to change and have small phenotypic effects that may be adaptive in one or another ecology. The system as a whole is relatively robust to many mtDNA changes.

    3. Many years ago, whale mtDNA was being explained in very similar ways to humans -- a matter of small effective size, in this case exacerbated by matrilineal pod structure. Might well be for many kinds of whales, but selection makes the story more complex.


    References

  • Muscle markings, chimpanzees, and Neandertals

    Thu, 2009-02-26 09:23 -- John Hawks

    Earlier, I pointed to my new article in Slate, about chimpanzee strength compared to humans. For anthropologists, I thought I might point to a passage in one of John Bauman's articles (1926:7-9), which raises a point I remember well from graduate school:

    The last question raised by the strength of the chimpanzee seems to have been completely overlooked in the past. All anatomists place reliance upon the relative development of the various muscle attachment ridges and pits on the bones as a trustworthy indication of the strength of the owner.

    Yet anyone who will take the trouble to compare carefully the crest of the ilium of the chimpanzee with that of the human being will notice that the muscle attachment roughnesses are very markedly less prominent in the former than in the latter, yet Suzette's pulls have clearly demonstrated an immense superiority in strength of the lumbar region in the ape. Also with regard to long sustained action, a short time spent in the anthropoidal posture will convince any person that this posture calls for more taxing long sustained action of the lumbar muscles than does the erect posture of the human being.

    We certainly can not look to man's erect posture for an explanation of the smooth sharp rim of the hip bone in the anthropoid ape, why then do the usually so reliable muscle attachments fail here to correctly indicate relative strength? The discrepancy is an extremely pronounced, not a trifling one, moreover.

    Bauman then generalized to Neandertals:

    And finally, how about those interesting Neanderthal men? We customarily base our estimate of their probable strength upon the degree of prominence of their muscle attachments as observed in the fossil bones-but should not the above consideration incline us toward caution in this class of inferences, particularly when the subjects are an ancient race known to have approximated closely to the anthropoidal type in their anatomy--as well as impel the comparative anatomist to a thorough investigation into the reason for this strange discrepancy.

    The hip is not a great example, because of the architectural difference between the human and ape pelvis. Still, we can make the same general observation about other bones like the humerus, on which muscle attachments don't convey the information about relative chimpanzee strength.

    Pronounced muscle attachment sites are not evidence that Neandertals were weak; within the context of recent hominids the rugosities and robusticity of bones are probably good indicators of muscle mass. But with some increasing evidence for evolution of muscle functional properties on the human lineage, I hesitate to assume that any Pleistocene human muscles interacted with their bony attachments in exactly the same way as ours.

    The muscle attachment issue may be especially confusing in Australopithecus, where there is a substantial contrast within species between small individuals like AL 288-1 and larger individuals -- the Maka humerus comes to mind. Here's the comparison, from White et al. (1993):

    Maka (top) and AL 288-1 humeri, from White et al. 1993

    Maka is the heavily-crested humerus at the top, Lucy's slender and smooth humerus underneath. Straightforward mass difference? Or difference in activity pattern? Or both? This is not such an unusual comparison considering the variability in living hominoids, including people. But it illustrates well the kind of range of muscle marking and cresting that existed in fossil populations. The changes during human evolution would have happened upon this underlying pattern of broad variation.

    We can probably assume it's not the functional properties of muscle differing between these two specimens. But what about between Australopithecus and Homo? Or Neandertal to recent human? We already know there are differences in muscle function among human populations, in part corresponding to alpha actinin-3 allele frequencies. Genetics may be starting to make the "expensive tissue" story come down to muscle instead of gut reduction -- if I'm going to make predictions, I would say that MYH16 will not long be alone as a gene corresponding to human muscle reduction.

    References:

    Bauman JE. 1926. Observations of the strength of the chimpanzee and its implications. J Mammal 7:1-9. JSTOR

    White TD, Suwa G, Hart WK, Walter RC, WoldeGabriel G, de Heinzelin J, Clark JD, Asfaw B, Vrba E. 1993. New discoveries of Australopithecus at Maka in Ethiopia. Nature 366:261-265.

  • Your brain on lactate

    Wed, 2008-10-01 14:57 -- John Hawks

    Interesting...

    The body breaks carbohydrates from food into glucose, the primary fuel of muscles and the mind. When muscles work hard, they produce lactate as a byproduct. Though recent studies have shown that muscles can re-use the lactate as fuel, conventional wisdom holds that it can also build up in the form of lactic acid, reducing performance and causing pain.

    The new research shows that the brain can switch to lactate during strenuous exercise, using the muscles' byproduct as backup fuel.

    Note: this has nothing to do with lactose metabolism. There's actually a substantial literature on the role of lactate in brain metabolism -- it seems to be very important for times when the brain must recover from hypoxic conditions, so there has been a lot of research. So there probably is a deeper story to be written here -- the "backup energy source" hypothesis is a little simplistic.

Subscribe to metabolism

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.