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paleoanthropology, genetics and evolution

blogging

  • Conference blogging, continued

    Wed, 2009-06-24 13:05 -- John Hawks

    Today's Nature picks up the conference blogging story that I covered last week. An interesting perspective:

    [Cancer researcher Francis] Ouellette and many other active bloggers are also members of the 'open science' movement, which encourages researchers to make their data public as quickly as possible. Bradley sees this openness as a powerful deterrent to anyone hoping to scoop him at a conference because anything cribbed from his talk is already out on the Internet for everyone else to view. "If someone actually does copy something, I think it would be pretty embarrassing," he says, "it's already there, and it's indexed to Google."

    I use blogging that way from time to time. To tell you the truth, I think it's embarrassing when I see letters to the editor of journals, published three or four months after the fact, that parrot criticisms of a paper that somebody made on a blog the day a paper appeared. Blogging doesn't spread obvious ideas to the clueful; it clues them in that somebody else had the obvious idea, too.

    As for the clueless, well, they're not following blogs anyway, are they?

  • Blogging and reporting from meetings

    Mon, 2009-06-15 12:20 -- John Hawks

    No, I'm not doing that right now. Elizabeth Pennisi reports that some science writers are miffed about bloggers at scientific conferences:

    In addition to reporting on genetic variation in a gene that is active in fast muscle fibers at The Biology of Genomes meeting, ["Genetic Future blogger Daniel] MacArthur wrote several on the spot blog posts covering advances discussed by the participants. Francis Collins also mentioned results on his new Web site.

    A specialized Web-based news service, Genomeweb, complained. To attend CSHL meetings, reporters agree to obtain permission from a speaker before writing up any results. But MacArthur didn’t have to click that box when he registered and was free to report without getting any go-ahead. Several other participants were twittering, says CSHL meetings organizer David Stewart. “They weren’t held to the same standards” as the media, says Stewart.

    CSHL is Cold Spring Harbor Laboratory, which puts on a roughly weekly series of conferences during the spring and fall on topics in biology. Organizers invite a relatively small number of researchers to present a plenary program, and a larger number of researchers and students pay fairly high fees to attend. It's a nice place, and although the fees run high, they're comparable to other conferences if you include the cost of the usual meeting hotel (since CSHL provides housing). But you can understand that a writer might want to be sure to get leads or background on several stories.

    A non-attendee who followed blogs could pretty easily figure out several interesting stories and then make phone calls to the authors. It's not the same as networking in person, and it doesn't give the kind of context that conference attendance can give. But it's lot cheaper.

    Dan MacArthur has posted his own reactions.

    It's worth mentioning here that most of the dangers of live-blogging are (in my mind at least) generally over-stated. For instance, the risk of being scooped due to data posted on the web seems rather far-fetched given that most of the potential scoopers are already sitting in the audience watching the presentation. There is a fear that live-blogging distracts people from watching the seminar; I would argue in response that - given the number of people I see programming or working on their grant submission in genomics meetings - we should be grateful that live-bloggers are actually engaging directly with the material being presented.

    An interesting conversation has emerged in MacArthur's comment section, and another at 2020 Science. Some commenters argue for openness at all costs, others that blogging a conference presentation is bad, bad, bad. And then there's the topic of tweeting. I'd be more likely to report conferences in haiku than on Twitter.

    What do I think? Well, I often take notes at meetings, but rarely blog about the talks. That's not a hard policy, it's just the way my writing style works out for me. I hardly ever uncritically repeat what somebody may have said or written, I tell you what I think about it. Sure, sometimes my thoughts don't add much value, and sometimes it's my own misunderstandings that come out. But generally I want to explore why something looks wrong, or the assumptions that somebody missed. If I'm going to seriously engage with somebody's ideas, I need more to work with than a conference talk. It's too easy to make simple mistakes in a talk that you'd easily catch in a manuscript, and too hard to judge from a talk which mistakes are easily fixed and which may be fatal.

    There are some posters and talks at every meeting that deserve more attention -- they tell a story that might not strike the casual observer as newsworthy, but that have real potential if told in the right way. Is it doing the authors a favor to blog about them? I can think of several better favors. Buttonhole a science writer and tell her why it's a story. Offer to interview the authors instead of just twittering their results. Always ask first before writing anything. How do you know that somebody who just saw the poster before you didn't tell the authors about some egregious error?

    Over the last few years, I've noticed public meetings getting more and more scripted and boring. What a drag. There are lots of reasons for this, and blogging is not even close to the top of the list. But blogging and twittering and cell phone cameras are part of the technological changes that have helped to dull things. When you go to a talk that shows slides only in 50 millisecond increments, you know they're thinking about camera phones and bloggers taking notes. It's hard enough to keep from seeming like a jerk; technology doesn't seem to make it any easier.

  • Blogging not for everyone

    Tue, 2009-06-09 18:30 -- John Hawks

    The New York Times has a story in its Fashion section: "Blogs Falling in an Empty Forest"

    Getting started is easy, since all it takes to maintain a blog is a little time and inspiration. So why do blogs have a higher failure rate than restaurants?

    According to a 2008 survey by Technorati, which runs a search engine for blogs, only 7.4 million out of the 133 million blogs the company tracks had been updated in the past 120 days. That translates to 95 percent of blogs being essentially abandoned, left to lie fallow on the Web, where they become public remnants of a dream — or at least an ambition — unfulfilled.

    Hey, it's not for everybody. It's a lot of work.

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  • Photoshop web colors

    Fri, 2009-06-05 19:55 -- John Hawks

    This is off the usual topics, but I mentioned once how poorly colors were coming out when I save sketchbook pieces as JPG. They look great in Photoshop, but saving as JPG mysteriously dulls all the colors. For the Termineander, I overcorrected the colors and got acceptable results.

    But I wanted to point to a post on Viget Inspire, The Mysterious “Save For Web” Color Shift. As with all things art, many people have noticed the problem ahead of me. The simplest solution is to set draft view to "Monitor RGB" (the lowest common denominator for the web) and forget the wonderful saturated colors that Photoshop managed to automatically get out of your scans. Sigh.

  • Science journalism, blogging, and the web

    Fri, 2009-03-20 13:57 -- John Hawks

    Nature (open access) discusses the decline of science journalism and the rise of blogs. The article profiles John Timmer, whose stuff at Nobel Intent I read almost every day. You can tell Nature doesn't really get blogs yet, because they don't provide a link!

    There are two separate stories here, the decline of journalism (including science) and the rise of blogging. I'm not so sure they're related. I'll tell you some of my thoughts, informed by a lot of blogging and a little bit of work in the media.

    The decline of science journalism is fairly straightforward:

    Science journalism boomed in the 1980s and early 1990s. In the United States — where by 1989 some 95 newspapers had dedicated science sections — and elsewhere, the field's precipitous rise was supported by buoyant profits in the media sector. "The model of a major paper was that they did really serious science coverage," says Deborah Blum, who won a 1992 Pulitzer Prize for her reporting in the Sacramento Bee on the use of animals in research, and who now teaches at the University of Wisconsin at Madison. But there was a problem with the science sections, she says. "They didn't make money."

    Most papers were willing to support their sections, even at a loss, because science was the thing to have. Today, in a harsher mass-media landscape, that has changed.

    It's tough to be a journalist, period, these days. Papers are shutting down all over the country. You don't see papers taking on the long investigative series nearly so much as they used to do. A lot of the life has gone out of political and sports reporting, and that's both because the people are different than they used to be, and because there are more demands on them.

    If you think about it, most journalism is really an impossible task. You're writing stories about things that some of your readers know in great detail -- like the player stats of the local football team -- and other readers have never heard about. If you cater too much to one crowd, you'll lose the other. And that's for topics that are inherently interesting to people, who care why the team won or lost the game.

    Now, if you take the average scientific topic, it takes five paragraphs just to explain why anybody should be interested. Writing an interesting newspaper-length article about science is hard. I know because I've done a few.

    A writer with great dedication and love for the subject can do the hard job, if she has time to devote to it. A few have the kind of science training that lets them accomplish the near-miracle of making science understandable and interesting, and they gravitate to the few outlets that can still support good science writing economically. A few scientists have the magical ability to write non-clunky prose, and they do some public writing as a sideline. Almost all of these people either write books or have the ambition of doing so, which tells you something about the disadvantages of the magazine or newspaper-length format.

    Now what about blogging? There we certainly have lots of people interested in writing about science, and some have the ability to do it well. But if we're going to compare the entire blogosphere with the NY Times, in terms of how much is worth reading for the average non-professional interested in science, the blogosphere is worse by an order of magnitude.

    There is one essential ingredient that blogs do well -- probably better than any other format. They have something new. That's the basic recipe of the news: there's always something different to read. That's what makes a blog a much better way to promote your research than a static lab website. No matter how flashy or multimedia your site is, once somebody has seen it, she doesn't need to come back and see it again.

    The combination of "always something new," "unpaid" and "no editor" doesn't work out all that often. A news site with a blog format, a little money and an editor, like Timmer's, has a good chance at developing a wide readership. It helps to be associated with a larger website already known for its tech reporting. There's some interesting documentary and multimedia work being done behind paywalls, like those associated with some college textbooks, but these largely defeat the purpose of accessibility. Plus, most of these sites are updated very irregularly, if at all.

    Oh, there's lots on the blogs for people who already follow science closely. They're the equivalent of sports fans who know all the player stats. That's certainly been my attitude about writing; I try to make things understandable for my future self if I'm reading my stuff two years from now and have forgotten what I'm writing about.

    There's a lot of garbage on the blogs, too. It's sort of like your box scores are interspersed with advertisements for somebody's cat, in the middle of political ad season in a swing state. Yuck.

    If we look beyond blogs -- which are really just a particular kind of website -- to other websites not connected with print publications, what do we find lacking?

    1. The big advantage of the web is that it makes it trivial to include photography, color illustrations, and graphic design with a text. In print publications, there are entire branches of people working on these aspects of design. What do we see on blogs, or other science-related websites?

    2. Networks -- a second big advantage of the web is hypertext. What do we see interesting there, other than linking to sites for quotes and reactions? Some networks have sprung up, like the Scienceblogs network, but the net effect has been to suck the life out of their graphic individuality. Sameness has some advantages, but if you want everything to look the same you can always use the feed.

    3. Multimedia -- from broadcast networks, we see some multimedia material in science. And there have been starts, like Science TV. I like to point people to the IHO's site, Becoming Human, as a real standout. It's good multimedia. But so far, the web has not done very well providing compelling and novel science content in these formats.

    4. Interviews. Reporters interview people and find out their views. What we tend to get on websites is a monologue. The multimedia and hyperlinking capabilities of the web are perfect for including a rich documentary interview experience.

    5. Editors help to make things understandable to nonspecialists. Some writers are good at self-editing, but even a great writer benefits from edits. Like multimedia collation and reporting, good editing happens behind the scenes. Few websites have a strong editor. That's great for vanity projects, but not so great for public understanding.

    6. Accessibility. This is the missing element in many online ventures. What to do about people who can't read your text, or who can't see your graphics or hear your podcast? One advantage of the usual bland blog format is that it's probably compatible with text readers. A flashy multimedia presentation is likely to cause accessibility problems. If you want to create something useful in education, it has to be accessible. I have some experience with this -- the cost of good transcription is one of the things holding me back from podcasting interviews.

    So are blogs going to evolve into the next step in science journalism? I doubt it. Blogs make one thing easy, but the other things that contribute to effective public communication are still hard. Look at me -- I could use an editor just to find a way to finish this post!

    UPDATE(2009-03-28):

    Carl Zimmer comments at length on the subject, also pointing to an article in the Columbia Journalism Review by Curtis Brainerd.

  • Sharing your work with the world: a workshop

    Sat, 2009-03-07 15:39 -- John Hawks

    I'm writing this post live from the Kaleidoscope program here at UW. My part of today's program is a workshop on sharing your work with the world, using blogs and other online tools.

    For participants (or others), I thought I would provide a couple of links. I wrote about blogging and tenure here last year, a post that I followed up with a second part, but I haven't yet finished the series.

    An earlier post also pointed to a 2005 article in Slate on the topic, along with some other articles.

  • Nature: Don't worry, be bloggy

    Wed, 2009-02-25 23:01 -- John Hawks

    This week's Nature has a surprising editorial about the value of scientific blogging:

    [R]esearchers would do well to blog more than they do. The experience of journals such as Cell and PLoS ONE, which allow people to comment on papers online, suggests that researchers are very reluctant to engage in such forums. But the blogosphere tends to be less inhibited, and technical discussions there seem likely to increase.

    Moreover, there are societal debates that have much to gain from the uncensored voices of researchers. A good blogging website consumes much of the spare time of the one or several fully committed scientists that write and moderate it. But it can make a difference to the quality and integrity of public discussion.

    That's not the surprising part. Nature was one of the earliest publishers to recognize the value of science blogs, putting out a story and ranking of top blogs nearly three years ago.

    The surprising part is the editorial's focus, which is on the role of blogging within the embargo system.

    I think that one of the most worthwhile purposes for blogging is to throw out new ideas for comment. Personally, I find that the airing that blogs give to research is a valuable addition to peer review. I won't say that blogs are superior to the peer review system, but I can say that many blog reactions to my work have been superior critiques to any peer review I got on the same papers.

    It seems obvious that blogging about research results is not the same as publishing them in a journal. But if you attract too much attention for unpublished results, your work will be old news. Some journals actually like that -- papers that have the benefit of lots of pre-press attention and critique are going to be superior papers. But a few of the highest-profile journals thrive on secrecy -- their articles are selected to attract attention, which is maximized when it strikes suddenly.

    At the same time, however, our cardinal rule has always been to promote scientific communication. We have therefore never sought to prevent scientists from presenting their work at conferences, or from depositing first drafts of submitted papers on preprint servers. So if Nature journalists or those from any other publication should hear results presented at a meeting, or find them on a preprint server, the findings are fair game for coverage — even if that coverage is ahead of the paper's publication. This is not considered a breaking of Nature's embargo. Nor is it a violation if scientists respond to journalists' queries in ensuring that the facts are correct — so long as they don't actively promote media coverage.

    The blogosphere differs from mass media and specialized media in many respects, but the same considerations apply in disseminating new scientific results there. Authors of papers in press have the right to correct misrepresentations and to point to results that will appear in a paper. But a full discussion should await the paper's publication.

    Well, I think that's a positive attitude. Science is better when it is more in the open. Plus, the communication of science is better when it's in the open. I think the embargo system is a problem for science. Embargoes help to manage the news around large announcements. But over many weeks, this constant drumbeat of press releases deadens the senses. Covering the "new" is understandable in the news business. But in science, "new" things are usually small tweaks on old stories.

    (via Genetic Future)

  • Some blogging essays

    Mon, 2008-10-27 00:06 -- John Hawks

    Andrew Sullivan reflects in an essay in this month's Atlantic about how blogging has evolved for him. I don't usually read Sullivan, but this is well put together:

    These friends, moreover, are an integral part of the blog itself—sources of solace, company, provocation, hurt, and correction. If I were to do an inventory of the material that appears on my blog, I’d estimate that a good third of it is reader-­generated, and a good third of my time is spent absorbing readers’ views, comments, and tips. Readers tell me of breaking stories, new perspectives, and counterarguments to prevailing assumptions. And this is what blogging, in turn, does to reporting. The traditional method involves a journalist searching for key sources, nurturing them, and sequestering them from his rivals. A blogger splashes gamely into a subject and dares the sources to come to him.

    ...

    Fellow bloggers are always expanding this knowledge base. Eight years ago, the blogosphere felt like a handful of individual cranks fighting with one another. Today, it feels like a universe of cranks, with vast, pulsating readerships, fighting with one another. To the neophyte reader, or blogger, it can seem overwhelming. But there is a connection between the intimacy of the early years and the industry it has become today. And the connection is human individuality.

    Sullivan's perspective is as a journalist-turned-online writer. On a related topic, I can point you to an essay by Warren Bonesteel, titled "Social Singularity":

    We're already witnessing the decline of unquestioned (and almost) religious respect for those who have lengthy CV's, high social status and other traditional credentials. We're also seeing a rise in creativity and in the sharing of ideas. There are even now growing trends in multi-disciplinary approaches to problem solving, no matter the venue or discipline. There also appears to be a growing trend towards Open Source works in nearly every discipline, particularly among those who wish to make the world a better place to live. Most of mankind's traditional institutions are so far behind the curve on these issues that they will never see it coming.

    Both essays reflect the optimism of the medium, possibly much too much so. But I'm reminded of a well-known twist on an Arthur C. Clarke quote: "When a scientist says something is possible, he is probably underestimating how long it will take. But when a scientist says something is impossible, he is probably wrong."

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  • Open science profile

    Fri, 2008-08-22 10:35 -- John Hawks

    The Boston Globe runs a piece on "open science" (big in the Boston area) and hits on an obvious problem:

    Scientists who plunge into openness also risk giving a competing lab a leg up.

    "Maybe somebody has discovered some interesting gene and doesn't want to blab to the whole world about why it's interesting," said Michael Laub, an assistant professor of biology at MIT. He says his lab is not overly secretive, but does not post "all the gory details of what someone is working on, because I don't want my grad students necessarily to be scooped by someone else."

    More broadly, the entire system of credit in science is based on being the first to publish a finding in a reputable journal; there's no incentive to post on blogs or community websites. Scientists try to get their findings published in the top journals in their fields, and major scientific prizes are awarded to those who make breakthroughs.

    I think that's a pretty simplistic rendering of how scientific credit is assigned. It ignores all the factors that depend not on your results but on networking. Who you know may be vastly more important than what you do.

    I think that if more researchers were independent (not tied to someone else's lab) and if they spent less time grant-writing, we'd see more open collaborations. Right now the biggest barrier to openness is centralization.

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