Orrorin

Substitution rates and ancestral population sizes

The rate of neutral mutations varies across the genome. When studying a single gene, this variation in rates is not especially important -- it is generally possible to obtain an estimate of the neutral rate for a single locus by comparing just that locus among closely related species.

But some comparisons involve looking at the pattern of variation among different loci. For instance, testing hypotheses about the ancestral populations leading to living species (like the common ancestor of humans and chimpanzees) involves comparing the amount of divergence among many independent loci. The variance in divergence times among loci gives an estimate of inbreeding in the ancestral population.

I discussed this particular example two years ago this week, after the paper that proposed extended hybridization between ancestral hominids and chimpanzees. The conclusion of the paper was that the X chromosome displays much less divergence between humans and chimpanzees than the autosomes, and this might reflect a late introgression of the X chromosome into hominids from another population that (mostly) was ancestral to chimpanzees. The autosomes, by contrast, averaged very old genetic divergences, although there was substantial variance. As I concluded then, the data look consistent with a large population size in the human-chimpanzee ancestor species, coupled with greater selection on the X chromosome. The interpretation of large population size (or alternatively, the interpretation of long-term population structure) comes from the low inferred inbreeding in that ancestral population -- which caused the variance in divergence dates among loci.

But there is another reason for a large variance in divergence dates: variance in mutation rates. Whenever mutation rates vary among loci, this variance adds to the variance among loci in their between-species genetic differences -- that is, the substitution rate. And as long as we are excluding selected sites (as we always try to do for these kinds of comparisons) we will overestimate the genetic diversity in ancestral species whenever the mutation rate varies among loci.

A new paper by Svitlana Tyakucheva and colleagues looks at human and macaque genomes to find patterns underlying the variance in mutation rates among regions of the genome. They find that a number of factors may cause such variations, including chemical factors like the CG content of the genome, functional causes such as male versus female rates of recombination, and large-scale structural causes such as telomeric proximity:

While a complete understanding of all biological mechanisms leading to variation in neutral substitution rates across the genome remains elusive, it is plausible that at least some of these mechanisms are conserved over relatively long evolutionary distances. For instance, both mouse-specific and rat-specific substitution rates are positively correlated with rodent-primate substitution rates [14], suggesting shared mechanisms persisting over ca. 90 million years [15]. Additionally, a positive correlation exists in substitution rates of homologous X- and Y-chromosomal introns that diverged from each other ca. 100 million years ago [16] (Tykucheva et al. 2008: R76).

Their finding that male recombination is an important contributor to mutation rate heterogeneity puts the focus on the X chromosome -- which has little recombination in males -- as unusual. X versus autosomal position did not explain a large fraction of the variance in this study (only around 2 percent, controlling for other factors) but the deviation was in the right direction to help account for the low X chromosome divergence between humans and chimpanzees.

Altogether in this study, a large fraction of variation in the human-macaque substitution variability could be explained by phenomena that affect the rate of mutations, including the structural and functional factors listed above as well as the corresponding homologous variability between mice and rats, and dogs and cattle. If these variations were explained by inbreeding in the human-macaque ancestral species, they would be random with respect to the dog-cow or mouse-rat divergences, and with respect to structural causes. So current estimates of the effective sizes of human-chimpanzee and other ancestral populations are almost certainly inflated. The amount of inflation is not clear, but a good estimate will require correcting for a large number of factors -- a complicated analysis.

Since the date of the human-chimpanzee divergence depends on our assessment of the diversity within the human-chimpanzee ancestral population, it may be a while before we can settle the issue of human-chimpanzee divergence time. That may or may not provide hope for Sahelanthropus, Orrorin, and Ardipithecus kadabba -- all supposed hominids that would predate 5 million years ago, the current best genetic estimate of the human-chimpanzee divergence time. To be sure, if the date is simply in error, that error might encompass older dates consistent with a 7-million-year divergence. But I'm not sure we should believe that the error is biased toward an older divergence -- "error" might lean in either direction, and a younger species divergence remains possible.

References:

Tyakucheva S, Makova KD, Karro JE, Hardison RC, Miller W, Chiaromonte F. 2008. Human-macaque comparisons illuminate variation in neutral substitution rates. Genome Biol 9:R76. doi:10.1186/gb-2008-9-4-r76

The Orrorin identity

There's nothing especially surprising about the functional interpretations in Richmond and Jungers' paper about the Orrorin BAR 1002'00 femur. They conclude it was an australopithecine-like biped, because it shared several features with australopithecine femora: in particular, it has a long, narrow, anteroposteriorly flattened neck and a broad thick proximal shaft.

In this, they mirror the conclusions of the original description of the Lukeino fossils by Senut et al. (2001). Richmond and Jungers also reiterate the evidence for arboreality in the Lukeino fossils, including the well-developed musculature of the distal humerus and the chimpanzee-like curved finger bone. I wonder why their analysis could not have made something more out of the other two femoral fragments, one of which is fairly large (but lacking the head). Still, the paper reiterates the quite good evidence for bipedality in the most complete femoral specimen.

I wonder sometimes how closely people actually read the papers they comment on. The associated coverage, including Ann Gibbons' article, has made a lot out of a small point in the paper, but I think that the commenters have it wrong.

Here's the story: When the Orrorin materials were first published, Brigitte Senut and Martin Pickford put forward the argument that these may be more closely related to Homo than to known australopithecines. They based their argument mainly on Orrorin's relatively thick-enameled molars, which they viewed as different from the thin-enameled molars of Ardipithecus, but lacking the enlarged dentition of Australopithecus. So, they suggested that Orrorin might be a plesiomorphic ancestor of Homo, and that Ardipithecus and Australopithecus represent divergent lineages derived in their dental anatomy.

I don't find that suggestion very compelling, because it seems to put too much faith in the absence of evolutionary reversals. There's no reason why a large-molared australopithecine should not have given rise to small-molared Homo, particularly since smaller-toothed Homo habilis is apparently derived from earlier, larger-toothed "Homo" specimens like A. L. 666-1 and Omo 75-14. And Haile-Selassie, Suwa and White (2004) claimed that the Orrorin, Sahelanthropus, and Ardipithecus dentitions were so similar that they might represent one taxon. So the dental contrasts among these early hominids are probably not great enough to justify the idea that Orrorin is an exclusive Homo ancestor.

The femur also formed a part of this phylogenetic story, with Senut and Pickford having noted the lack of extreme australopithecine-like features in the femur. The Orrorin femur has a less exaggerated neck length than many australopithecine specimens, it is larger than many, and appears to have a higher neck-shaft angle. To the extent those features differ from later Australopithecus, they resemble the human anatomy.

Richmond and Jungers address this argument very briefly in their last paragraph, by noting that the functional elements of the Orrorin femoral anatomy are entirely consistent with the australopithecine pattern of bipedality:

The similarity between O. tugenensis and australopith femora weakens support for scenarios in which O. tugenesis is ancestral to Homo to the exclusion of A. afarensis (4). Instead, the overall primitive hominin morphology of the O. tugenensis femur, along with primitive dental anatomy, is consistent with the more parsimonious hypothesis that it is a basal member of the hominin clade.

I think that's fair, as far as it goes. The overall morphological pattern of this femur, with its long neck and broad shaft, is much like known australopithecine femora. But to go a bit further, their metric comparisons show BAR 1002'00 to be the most Homo-like of the early hominid femora they examined, and their phenetic cluster puts it basal to the other australopithecines. That's pretty much exactly what Senut et al. have consistently said. So I have a hard time understanding how those observations refute the idea that Orrorin has a more Homo-like femur than later australopithecines!

Again, I don't put much stock in the phylogenetic argument for an Orrorin-Homo link. I don't see any difficulty deriving Homo from Australopithecus, especially given the likely effects of body size evolution on the locomotor pattern. And at least one or two early Homo femoral specimens, like KNM-ER 1481, share most of the Australopithecus-like pattern of proximal femur anatomy. But this paper surely doesn't add anything new to the critique of Senut and Pickford's preferred phylogenetic hypothesis. The details simply don't detract from their story.

References:

Richmond BG, Jungers WL. 2008. Orrorin tugenensis femoral morphology and the evolution of hominin bipedalism. Science 319:1662-1665. doi:10.1126/science.1154197

Gibbons A. 2008. Millennium ancestor gets its walking papers. Science 319:1599-1601. doi:10.1126/science.319.5870.1599

Haile-Selassie Y, Suwa G, White T. 2004. Late Miocene teeth from Middle Awash, Ethiopia, and early hominid dental evolution. Science 303:1503-1505.

Senut B, Pickford M, Gommery D, Mein P, Cheboi K, Coppens Y. 2001. First hominid from the Miocene (Lukeino Formation, Kenya). C R Acad Sci Paris, Sciences de la Terre et des planètes 332:137-144.

Miocene hominids and a crisis of confidence

Out of this week's Science Times special on evolution, I clicked into John Noble Wilford's article first, titled "The Human Family Tree Has Become a Bush With Many Branches".

Now, I don't know about you, but that seems like a boring headline to me. They've been talking about human evolution being a bush for going on 20 years now. It was an old idea when I was in graduate school. So it seems like, if this is all we have going on, the "new frontier" of paleoanthropology must be pretty dull.

The writer doesn't write the headlines, and the headline doesn't describe Wilford's story, which is basically a verbal slide show of fossil discoveries over the last decade or so. Some bone pictures (of the actual species discussed) accompany the article, and it's a good enough sort of account of new finds since 1990, framed around the tension between fossil finders and molecule mavens.

But I'll be a little critical. The thesis is that paleoanthropologists suffered a crisis of confidence after molecular data came online in the 1980's, and "a rapid succession of fossil discoveries since the early 1990's has restored" it.

Well, OK, maybe. But consider the listed discoveries: Kenyanthropus, Ardipithecus ramidus, Ardipithecus ramidus, Orrorin tugenensis, Sahelanthropus tchadensis, Homo floresiensis, and Australopithecus anamensis. Of all of these, only Ar. ramidus and Au. anamensis have gone without significant controversy.

We can set aside H. floresiensis for a moment -- the controversy about it being possibly the loudest, it also stands apart as the only species listed younger than 3.9 million years. All of these early Pliocene and Miocene species have also been challenged -- by the discoverers of the others, by old hands, and by young upstarts like me. At least one research group has claimed that all of the Miocene "genera" may actually belong to one species. Another has claimed that most of these "hominids" may actually be apes.

Whether there was any crisis of confidence among paleoanthropologists, all this disagreement is certainly business as usual.

And, contrary to the article, every one of these species would be thrown from the hominid line, if we believe the molecules. Here's the text from the article:

Genetic clues also set the approximate time of the divergence of the human lineage from a common ancestor with apes: between six million and eight million years ago.
Fossil researchers were skeptical at first, a reaction colored perhaps by their dismay at finding scientific poachers on their turf. These paleoanthropologists contended that the biologists' "molecular clocks" were unreliable, and in some cases they were, though apparently not to a significant degree.
...
The new finds have filled in some of the yawning gaps in the fossil record. They have doubled the record's time span from 3.5 million back almost to 7 million years ago and more than doubled the number of earliest known hominid species. The teeth and bone fragments suggest the form -- the morphology -- of these ancestors that lived presumably just this side of the human-ape split.

It is true that the new fossils date as far back as 7 million years; with Sahelanthropus just under that date, Orrorin at around 6 million, Ar. kadabba at 5.5, Ar. ramidus at 4.4, and Au. anamensis at around 4.1.

But it has been many years since a genetic comparison indicated a human-chimpanzee common ancestor as old as 6-8 million years. This year's study by Holbolth et al. (2007) estimated a human-chimpanzee speciation time of 4.1 +/- 0.4 million years. That makes Au. anamensis possibly too young to be a hominid. The rest of those species would presumably be just so many apes.

Now, I don't believe for a second that Au. anamensis is an ape and not a hominid. It just looks too much like Au. afarensis -- so much so that some would put them in the same species. The evolutionary transition between these two is well documented, and will be more so when some as-yet-unpublished fossils come out. So anything younger than 4.1 million years is almost certainly not right for the human-chimpanzee divergence.

But the 4.1 million year estimate is not unusual compared to other recent studies. My post from last May covers many of these recent studies, including last year's problematic "hominid-chimpanzee hybrid speciation" paper by Nick Patterson and colleagues. The conclusion in that paper about hybridization was certainly wrong, but the date of 5 million years was right in line with other estimates.

These genetic comparisons are not easily dismissed. Possibly there has been a rate deceleration of mutations in the human lineage that means that the estimated dates are too recent. Maybe 4.1 million years can be stretched into 6 million. Maybe it can even be stretched into 7 million. But all this stretching does have other effects -- on the estimated dates of earlier divergences -- and those are compounded by a large multiple of the few million years we may try to push the human-chimpanzee speciation date. That 4.1 million year estimate is calibrated from an African-Asian great ape divergence at 18 million years ago. Push the human-chimpanzee divergence to 7 million, and you push the orangutan-human divergence back into the Oligocene. Are silent sites in humans evolving more slowly than cercopithecines? Probably. Are they evolving that much slower than orangutans? I suppose nothing is impossible, but maybe we should take another look at those fossils.

All this is to point out that there really is a conflict between these Miocene "hominids" and genomic evidence about human-chimpanzee speciation time. I don't see any magic solution to this problem from the molecular side -- those dates keep coming up again and again from different regions, and from comparisons across many regions -- including estimates that are not calibrated by other fossil divergences. This is not an easy "the molecular clock must be wrong" kind of problem.

Nor are the fossils an easy problem. There is pretty good evidence for vertical posture or hindlimb-dominant movement in all of these "hominids." Up to now, we've accepted these kinds of features as de facto evidence of bipedality, and assumed that bipedality is such a unique character of hominids that it is unlikely to be any older. Yet few of these fossils provide really good evidence for obligate bipedality, and some of them provide none at all.

Is it possible that bipedal apes long preceded the divergence of humans and chimpanzees? Was the common ancestor of the two lineages a biped? Or was significant vertical posture a common feature of many Miocene apes -- making Sahelanthropus a possible homologue of Oreopithecus?

Which feature is the important one? The long nuchal plane of Sahelanthropus? The femur neck cortical bone distribution of Orrorin? The toe bone of Ar. kadabba? Heck, I can hardly convince my undergraduates about that toe bone!

I've talked to people about this. Some think that all the molecular stuff is just jibberjabbing, and any day now we will find out that the date estimates were wrong all along.

I think it may be time to start doubting our confidence again.

UPDATE (6/28/2007): I've gotten into rather an interesting e-mail discussion about whether I should have included Homo georgicus on the list of new species. Frankly it didn't occur to me: Wilford didn't mention it.

Actually if you start to think about all the new names that have been proposed in the last 15 years, it is a quite bushy list. It will be no surprise that I think this bushiness has more to do with the listers than the listees.

Anyway, there is something interesting about early Homo right now that goes beyond the simple splitter/lumper questions. I'll have more to say about it in a few days.

References:

Hobolth A, Christensen OF, Mailund T, Schierup MH. 2007. Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet 3:e7. doi:10.1371/journal.pgen.0030007

Patterson N, Richter DJ, Gnerre S, Lander ES, Reich D. 2006. Genetic evidence for complex speciation of humans and chimpanzees. Nature 441:1103-1108doi:10.1038/nature04789

Our quondam homs

Did I miss a meeting?

Thanks to efforts in Ethiopia and elsewhere, we already know a good deal about A. afarensis. It has been called an 'archaic' hominin for at least two reasons. First, it is old: its fossils date from between 4 million and 3 million years ago. Second, its morphology is archaic, in the sense that its brain case, jaws and limb bones are much more ape-like than those of later taxa that are rightly included in our own genus, Homo. When adjusted for its body size, the brain of A. afarensis is not much larger than that of a chimpanzee, and although it has lost the large canines that distinguish apes from hominins, other aspects of its dentition, such as its relatively large chewing teeth, are still primitive (Fig. 1) (Wood 2006:278).

Every other reference on the internet to "archaic" hominins, hominids, or homininos refers to Middle Pleistocene Homo. So what's going on with this?

I guess that "australopithecine" no longer appeals to folks who want to simultaneously refer to Australopithecus, Kenyanthropus, Ardipithecus, Orrorin, Paranthropus, and whoknowswhatelseensis. So maybe some people are casting around for another term, besides the boring "early hominid" -- oops, "hominin".

It doesn't make sense to redefine "archaic" to mean non-Homo hominids -- oops, hominins. So I thought I would look in my thesaurus for some alternatives:

age-old, aged, antediluvian, antiquated, antique, archaic, back number*, been around*, bygone, creak, dated, decayed, done, démodé, early, elderly, erstwhile, fossil*, hoary, moth-eaten*, obsolete, old goat*, old-fashioned, older, oldie*, out-of-date, outmoded, primal, primeval, primordial, quondom, relic, remote, rusty, sometime, stale, superannuated, timeworn, unfashionable, venerable, vintage

Now, sure "fossil" is out -- but there are a lot of good options here. I think "hoary hominids" is a bit catchier than "old goat hominids", er, "hominins". But maybe "quondam hominins" is the way to go.

References:

Wood B. 2006. A precious little bundle. Nature 443:278-281. Full text (free)

"Spacecraft all over the Pliocene"

Rex Dalton has a great two-page article in Nature about the bush vs. ladder dispute. It keys off of the Middle Awash Australopithecus anamensis article by White and colleagues from a couple of weeks ago.

If you recall that one, White et al. posited that Ardipithecus was likely ancestral to Au. anamensis, and that the two did not overlap in time. Here's the key exchange in the Dalton piece:

This month's Nature paper makes a bold argument, and shows the Awash team seeking to put its mark on the record. Others in the
field are impressed. "When you find 30 new hominid fossils, you are allowed a certain amount of conjecture," says Bernard Wood, a palaeoanthropologist at George Washington University in Washington DC. "As always, they have done a fantastic job."
But he and others are unconvinced by the Awash team's conclusion: "This is only the first half of the rugby match," says Wood. Meave Leakey, lead author on the Au. anamensis discoveries in Kenya, is more blunt. "I don't believe this," she says. "We do not have the specimens to fill the gaps."
Leakey and Wood are among those who believe that other, as yet undiscovered hominid species may have lived at this time, from 4.4 million to 2.9 million years ago. The existence of other species would cloud or eliminate the argument for a direct lineage. "My prejudice is there are more lineages rather than fewer -- more diversity," says Wood. "I have to concede these new data are dramatic. But we should beware coming out with a complete explanation when we don't have all the
evidence."
This argument frustrates White. "There were Martians there back then too," he says. "And spacecraft all over the Pliocene -- we just haven't found them yet."

Waiting for Monte Cassino

In a series of articles since 2000, White and colleagues have laid out a systematic attack on the "bushy" phylogeny model. Their arguments have extended across four million years and seven species, with a breadth that rivals the Allies breaking the Winter Line.

Consider the angles of attack:

1. Au. anamensis -- Au. afarensis. Everyone basically accepts that Au. anamensis is a direct ancestor of Au. afarensis. And the two species are really not very different from each other -- for instance, they are more alike than either is to Ardipithecus. The transition between these species would look to be a simple case of anagenesis, except...

...for Kenyanthropus (Leakey et al. 2001). This small-toothed, flat faced hominid needs an ancestor, too. Au. anamensis might have been the common ancestor of Kenyanthropus and Au. afarensis. If so, then both these later species originated by cladogenesis from Au. anamensis. A similar argument might be made for other species, like Australopithecus bahrelghazali (Brunet et al. 1996) or the Sterkfontein Member 2 hominids. But Au. bahrelghazali is only known from a partial mandible and only differs from Au. afarensis by a three-rooted premolar, which is considered by many to be weak evidence, and the Sterkfontein Member 2 sample has not yet been taxonomically assigned -- they might turn out to be Au. afarensis, for example. Kenyanthropus remains the strongest case for cladogenesis (i.e., a "bush"). Yet...

...White (2003) denied that the Lomekwi skull KNM-WT 40000 was a distinct species. In particular, he argued that the extensive postmortem deformation of the skull made it impossible to substantiate an anatomical difference from Au. afarensis, and even if it was different, the anatomical diversity of living hominoid species is so great that it would probably encompass the difference between KNM-WT 40000 and known Au. afarensis crania.

2. Earliest hominids. At the moment, the earliest putative hominids include three genera: Orrorin (Senut et al. 2000), Sahelanthropus (Brunet et al. 2002), and Ardipithecus, represented in the Late Miocene by Ar. kadabba (Haile-Selassie 2001, Haile-Selassie et al. 2004). Evidence for obligate bipedality has been challenged (by different researchers) for each of these three (I'm one of those who has questioned bipedality for Sahelanthropus).

So far the only comparable anatomical parts from all three samples are teeth...

...which were examined by Haile-Selassie, Suwa and White (2004). They concluded that the variation among these three genera

is no greater in degree than that seen within extant ape genera. Despite claims of molar enamel thickness differences among these late Miocene fossils, we question the interpretation that these taxa represent three separate genera or even lineages. Given the limited data currently available, it is possible that all of these remains represent specific or subspecific variation within a single genus (Haile-Selassie et al. 2004:1505).

Additionally, Ohman, Lovejoy and White (2005) challenged the interpretation of the internal anatomy of the Orrorin femur, which had been suggested to be more derived than that of Au. afarensis. They wrote:

We agree that the Lukeino femur's external morphology suggests some form of bipedality. Yet the more detailed original scans appear to show a distinct superior cortex different from Australopithecus and humans, with the cortex distribution being more primitive than that seen in any other hominid, including Australopithecus.

The relevance of this argument to the phylogenetic diversity of early hominids depends on the anatomy of the Ardipithecus femur, which none of the rest of us are in a position to know. But one may speculate that if all these early "hominids" had femora with similar morphology, it would further reinforce the interpretation that they belong to a single lineage.

3. Ardipithecus -- Au. anamensis. This is the current example. Here's how Dalton discusses it:

The latest Afar discovery is exciting experts because it shows that the three hominids existing in the same area, but in successive time periods. Tim White of the University of California, Berkeley, co-leader of the Awash team, believes this points to a direct lineage between the three -- a process called phyletic evolution. The new Au. anamensis fossils are only 300,000 years younger than Ar. ramidus, meaning that if one became the other, the changes would have had to happen that fast. But the key point, says White, is that fossils of Au. anamensis and Au. afarensis have never been found in sediments the same age as those containing Ar. ramidus. If fossils of the different species were found together, that could show that they belonged to multiple lineages existing simultaneously.
Finding remains of all three species in the same area but not from the same time period suggests they did not coexist, says White.
...
The specimens also provide anatomical clues to evolutionary history. "The new Au. anamensis fossils are anatomically intermediate between the earlier Ar. ramidus and the later Au. afarensis," says White. For example, the teeth of the newly discovered Au. anamensis fossils seem adapted to chew tougher and more abrasive foods than Ar. ramidus. The researchers believe this shows that Au. anamensis had a broader diet. "All this strengthens the view that there is phyletic evolution from Ar. ramidus through Au. anamensis," says White. He believes he has nailed down the relationship between the two later species, although he says that further specimens are needed to prove the earlier link (Dalton 2006:1100).

Of course, it would help matters if we knew in more detail what Ardipithecus looked like. But one must imagine that the stage is being set for its revelation. The unilineal interpretation places Ardipithecus at the critical point as an ancestor to the major mid-Pliocene australopithecine lineage. Extending the unilineal interpretation earlier into the Late Miocene would make Ardipithecus the earliest hominid as well.

It is not necessary to think that taxonomic uniformity means anatomical uniformity, though. Ardipithecus already encompasses a trend of decreasing canine size and less sectorial P3 for example. A trend toward fuller skeletal adaptation to bipedality may also be imagined. But in that context, it is important to note that the time interval between the Orrorin femur and the unpublished Aramis skeleton is longer than the time between Aramis and Hadar. Those relative times may become quite important in thinking about the evolution of those postcrania.

The Winter Line was broken at Monte Cassino, after many failed attempts from different approaches. The Aramis fossils are either the heavy shoe waiting to drop, or they are the uncomfortable foot that all this talk about phyletic evolution is meant to shoehorn into place.

Commentary

If all these cases are added together, they imply a single evolving lineage encompassing at least four anagenetic taxa, Ar. kadabba -- Ar. ramidus -- Au. anamensis -- Au. afarensis. This last would presumably be followed by a cladogenesis into a robust australopithecine species (Australopithecus aethiopicus) and Australopithecus africanus.

One could add Homo erectus to this list, since White and colleagues argued in their description of the Daka skull (Asfaw et al. 2002) that the Asian and African samples represent one cosmopolitan species.

But then one species sticks out as a surprising exception to the pattern: Australopithecus garhi (Asfaw et al. 1999). It will be interesting to see a close argument showing why this species is really different from South African Au. africanus. Say, more different than KNM-WT 40000 is from the Hadar crania. It's quite glaring, really, that this species should be there mucking up such a simple phylogeny.

I have to say, after reviewing all these papers in one sitting -- this entire bush vs. ladder thing is getting very tiresome! I mean, isn't there something else that we could organize early hominid discoveries by? These are all papers in the top journals, and this is the (fairly specialized) discussion that has been promoted as the central issue in the field!

The subtitle of the Dalton piece suggests that it is merely a philosophical difference:

Deciding whether our ancestors evolved as a single lineage may depend more on philosophy than fossils.

But that's not really true. There is a clear null hypothesis here, quite directly drawn from William of Ockham:

entia non sunt multiplicanda praeter necessitatem

Which of course means:

Sometimes fossil samples really do form ancestor-descendant relationships.*

(*) It doesn't really. It means "Entities should not be multiplied beyond necessity."

References:

Asfaw B, Gilbert WH, Beyene Y, Hart WK, Renne PR, WoldeGabriel G, Vrba ES, White TD. 2002. Remains of Homo erectus from Bouri, Middle Awash, Ethiopia. Nature 416:317-320. DOI link

Asfaw B, White T, Lovejoy O, Latimer B, Simpson S, Suwa G. 1999. Australopithecus garhi: A new species of early hominid from Ethiopia. Science 284:629-635. DOI link

Begun DR. 2004. The earliest hominins -- is less more? Science 202:1478-1480. DOI link

Brunet M. and 37 others. 2002. A new hominid from the Upper Miocene of Chad, Central Africa. Nature 418:145-151. DOI link

Brunet M, Beauvillain A, Coppens Y, Heintz E, Moutaye AHE, Pilbeam D. 1995. The first australopithecine 2,500 kilometres west of the Rift Valley (Chad). Nature 378:273-275. DOI link

Dalton R. 2006. Feel it in your bones. Nature 440:1100-1101. DOI link

Haile-Selassie Y. 2001. Late Miocene hominids from the Middle Awash, Ethiopia. Nature 412:178-181. DOI link

Haile-Selassie Y, Suwa G, White TD. 2004. Late Miocene teeth from Middle Awash, Ethiopia, and early hominid dental evolution. Science 303:1503-1505. DOI link

Leakey MG, Spoor F, Brown FH, Gathogo PN, Kiarie C, Leakey LN, McDougall I. 2001. New hominin genus from eastern Africa shows diverse middle Pliocene lineages. Nature 410:433-440. DOI link

Ohman JC, Lovejoy CO, White TD. 2005. Questions about the Orrorin femur. Science 307:845. DOI link

Senut B, Pickford M, Gommery D, Mein P, Cheboi K, Coppens Y. 2001. First hominid from the Miocene (Lukeino formation, Kenya). Comptes Rendus 332:137-144.

White T. 2003. Early hominids -- diversity or distortion? Science 299:1994-1996. DOI link

Orrorin opera

There's a new paper by Tim White in the "In Press" portion of Comptes Rendus Palevol, titled "Early hominid femora: The inside story". It has a short introduction to the importance of the Orrorin proximal femur to understanding the evolution of hominid bipedality.

That short introduction is followed by an four-page-long description of White's correspondence attempting to get photographs, scans, and measurements of Orrorin. He quotes his own e-mails. With dates. I've never seen anything quite like it in a journal.

The review ends with this paragraph:

It is unclear why the Orrorin discovery team and its associates will not publish the comparatively very simple conventional radiography and conventional photography of the unglued BAR 1002'00 femoral neck that we have urged on numerous occasions (see above) since 2001. Martin Pickford and Brigitte Senut mysteriously did not join the list of authors who responded to our last, published request for these data in our February 2005 letter to Science. Their American colleagues responded: "it is our understanding that the initial studies were carried out under serious constraints of time and other resources [...] and we have made it clear that we plan to rescan and study the existing fossils if funds are made available" [5 (p. 845)]. We were again disappointed because we had asked for the publication of new data, not the promotion of a funding request for documentation long overdue.

This quote refers to the 2005 exchange between Ohman, Lovejoy and White on the one hand and Eckhardt, Galik and Kuperavage on the other. Read it too.

The cited response ends with this paragraph:

As far as phylogenetic speculations, a fuller understanding of the first several million years of human ancestry awaits the outcome of studies (already under way by other members of our research group) of the equivocal hominoid remains from Chad, as well as some much more comprehensive results from the by now decade-long analysis of the Ardipithecus (née Australopithecus) ramidus fossils, the reported fragility of which nonetheless should not preclude the making of CT scans and publication of what they show.

Well, I know which of these folks have shared data with me...

I have an idea for a contest. Please send your best punchline for the following joke, and I'll post the top ten (let me know if you want credit!):

How is Bigfoot different from a Miocene hominid?

References:

Eckhardt RB, Galik K, Kuperavage AJ. 2005. Questions about the Orrorin femur. Science 307:845. Full text

Ohman JC, Lovejoy CO, White TD. 2005. Questions about the Orrorin femur. Science 307:845. Full text

White TD. 2006. Early hominid femora: the inside story. Comptes Rendus Palevol (in press). Full text (subscription)

Lowly origin of bipedalism :: the squatting model

In his 2003 book, Lowly Origin, Jonathan Kingdon presents a model for the origins of hominid bipedality, along with many other possible insights concerning the evolution of both earlier apes and later hominids. The book is notable because of Kingdon's speciality: as a very talented zoologist and perhaps the foremost biogeographer of African mammals, he brings an eye toward the temporal and spatial context of the transition to bipedalism that is generally lacking in other models. The book is also notable because it is recent, and provides a present-day look at many venerable models of hominid origins that well characterizes their strengths and weaknesses with respect to the present pattern of evidence.

An example of his biogeographical knowledge coming into play is his hypothesis for the place that bipedalism may have originated. Many models talk about a hypothetical division between Central African and East African forests or a hypothetical mosaic forest-savanna woodland mix. Kingdon can talk about actual forests where this might have happened. He focuses on the coastal African forest, which stretches from Somalia to South Africa (116-119). His examinations of biogeography of microfauna have shown that this forest has been biologically separate from those of Central Africa for a very long time. Today, the coastal forest is depauperate of large and medium-sized endemic mammals, which Kingdon attributes to human activity during the past 40,000 years. In the past, this forest would have served as a core area for animals spreading periodically into river valleys and forest fragments further inland. It would also have presented a rather different climate regime from the West and Central African forests, with its highly seasonal monsoonal rainfall.

Filling the bill

Any model that attempts to explain hominid origins must provide an account of several distinct things:

  1. How did early hominid populations become separated from early chimpanzee populations? That is to say, what accounts for the human-chimp divergence?
  2. What decisive advantage was there in increasing the frequency or importance of bipedal locomotion?
  3. What exactly was the ancestral pattern of locomotion?
  4. Why did this ancestral pattern, whatever it was, lose its advantages when compared to bipedality?

To question number 1, Kingdon gives basically the same biogeographical answer as Coppens' East Side Story and many others: namely, that progressive aridification of East Africa led to a separation of East and West African ancestral hominoids. His details about the nature of the East African forest are very welcome and interesting, but do not change the basic picture. Kingdon places the timing of this event in several cycles of aridity beginning at 10.5 million years ago, through recurrent drying at around 7.8 million years ago and 6.2 million years ago (119). These dates do approximately correspond with the time interval preceding the fossil remains of the earliest hominids, which are now some 6 million years old.

To the second question, about the advantage of bipedalism, Kingdon provides an answer based on Clifford Jolly's (1970) seed eaters hypothesis. In this model, and upright posture for the upper body is advantageous for use in foraging for small items, in particular seeds from grasses. Like Jolly, Kingdon envisions a squatting, ground-based ape, which he calls the ground ape. He describes the effects of a small item feeding strategy as follows:

One way of asking how apes might have responded to these limitations is to look at the feeding strategies of living species. For example, when contemporary chimps are under duress from a poor fruit season, they break up into smaller foraging units that scour the environment more thoroughly while trying to maintain their frugivorous dietary preferences for as long as possible. By contrast, the more terrestrial gorillas respond to the same pressure by maintaining their groupings but diversifying and enlarging the range of their foods to include previously ignored and less digestible plants. Another variant, better suited to eastern forests, would have been to diversify (by including more animal and underground foods) but also to spend more time and effort foraging for smaller (but still nutritionally rewarding) items. As observed in contemporary situations, these are stopgap routines for gorillas and chimpanzees. However, I am proposing that similar strategies could develop or be transposed into a sustained and systematic way of using a spatially restricted environment. (122-123)

When Jolly originated the small object feeding model, he focused on the analogy between geladas and savanna baboons as a way of understanding the effects of this dietary change. Kingdon focuses more closely on the range of plant species that may be exploited by such a dietary shift, the ability of ancient groups to exploit the same geographic range more intensively, and the probable ecological diversity of plant species in the East African forest. He notes that chimpanzee groups across Africa appear to use a similar number of fruiting plant species, adjusting their home range in response to habitat richness. This results in a great disparity in chimpanzee foraging ranges (from as little as five square kilometers to as much as 400 square kilometers). Kingdon suggests that a more intensive foraging strategy based on the wider ecological diversity of East African forests may have increased the carrying capacity of these forests for the ground apes, with consequent alterations in their social behavior and ecology. He supports this ecological model with an analysis of the species richness of human-edible plants in this eastern forest (123). His major case is based on the increased availability of ground or near-ground foods in the eastern forest, including both animal and plant resources, compared with the small ratio of time that forced chimpanzees appeared to spend foraging near the ground as opposed to foraging canopy fruits

Perhaps the most important change, in answer to question 4 above, is a change in daily foraging range. As Kingdon notes, "Quadrupedalism would never have been abandoned if substantial distances had to be covered, especially if such journeys involved exposure to predators" (125). Easy terrestrial movement and escape from predation in apes requires the rapid movement of quadrupedal locomotion. It biped faces substantial disadvantages in these respects. This means that a greater reliance on bipedal locomotion would has required both a small home range and easy access to trees. This idea is a 180 degree shift from the Darwinian model of bipedal origins, in which upright posture was a reflection of the challenges of a poor habitat and the need to forage over long distances. Here, it is safe "secure and a rich environment" that is essential to the origin of bipedalism. In Kingdon's view, living apes naturally pursue a number of hand manipulation skills, social interactions, gestural communication, and carrying objects that require them to "squat, lie down, stand on two legs, or become three-legged" (125). For all of these behaviors, bipedal locomotion might well be naturally advantageous. But chimpanzees and gorillas cannot abandon quadrupedal locomotion and its speed advantages because of their large foraging ranges and susceptibility to predation. The commitment to quadrupedalism thereby impedes the further development of manual abilities that apes already have.

This idea provides a slightly different answer from Jolly might have given concerning why geladas are not more hominid-like than they are. Although the foraging style of manipulating small hard seeds and other objects might have been similar between early hominids and geladas, the habitat is very different. Geladas must retains an effective adaptation to quadrupedalism because they do not limit their foraging to areas where trees are readily accessible. Nor do they already show the range of manipulative behaviors shared by apes, which provided further incentives to bipedalism in early hominids.

The thrust from squatting

The squat-feeding model encompasses several untested predictions, which might well provide fertile ground for research. First, this pattern of adaptation should direct attention to the anatomy of the back. In particular, to conserve energy and maximize the use of a single foraging location, the spine should be well adapted to a bright posture, flexible in side to side movements, and capable of providing a stable platform for a wide range of movement for the arms. This may help to answer the question of why early hominids had relatively long spines, and especially in contrast with very short lumbar spines in other living hominoids. It also allows the side-to-side twisting motion of the pelvis during bipedal gait to be examined as an exaptation based on an earlier ability to rotate the upper trunk against a stationary pelvis. Normal arm-swinging upright walking depends on this flexibility of the lower spine, which would appear to be absent from living chimpanzees and gorillas, in which the flat iliac blades and the lower rib cage are strongly connected and relatively inflexible. Kingdon describes the compact, inflexible trunks of living apes (127) and their disadvantages for upright walking, but he does not explore why this configuration in apes would be advantageous for the locomotor behaviors of these apes, such as climbing or knuckle-walking. This difference from hominids is worth exploring, particularly in considering the effectiveness of early hominids as climbers.

The model also places a different spin on the usual anatomical description of the changes involved in bipedalism. Generally, the shortening and broadening of the iliac blades are seen as enabling a shift in muscular action during hip extension, recruiting the gluteus maximus as an extensor of the hip instead of an abductor. Kingdon explains the shortening of the iliac blades as a way of disentangling their action from the motion of the lower trunk, creating two separate functional units. In this way, he also explains the lengthening of the lumbar spine as part of the same anatomical change. This is potentially important because the length of the lumbar spine in the common ancestor of hominids and chimpanzees is not known. If hominids descended from an ancestor with the chimpanzee-like spine, a mechanism for the expansion in length of the lumbar spine is both necessary and welcome.

One of the advantages of bipedal locomotion often cited in explanations of hominid origins is the ability to see distances over tall grass while scanning for predators. Kingdon places a different twist on this also, by suggesting that this scanning behavior was present prior to the evolution of obligate bipedalism, as the ground apes would scan for predators from a squatting position. In this way, the apes habitually made their spines as vertically erect as possible at frequent intervals, and simultaneously required effective side to side head movement. This kind of behavior may have underlain the anterior placement of the foramen magnum and the reconfiguration of the head-spine articulation. This hypothesis would especially be interesting if it were shown that the anterior placement of the foramen magnum significantly predated the origin of the pelvic specializations for bipedalism. This kind of evidence might already be present in Sahelanthropus, Orrorin, or Ardipithecus. Especially in Sahelanthropus, where Brunet and colleagues (2002) have argued for an anterior foramen magnum, and in the Aramis occiput, where the foramen magnum also appears to be relatively anterior. Pelvic evidence is not yet available from any early hominid, and although the Orrorin femora are consistent with the weight-transmission characteristics of later hominids, it is not clear that this anatomical element is necessarily reflective of an entire pelvic anatomical complex.

One might argue that every hypothesis to explain the origin of bipedalism is in some sense an umbrella hypothesis (Langdon 1997), and this is no exception. While the fundamental change hypothesized by the model is a change in foraging strategies, this change is proposed have several effects on other elements of early hominid behavior.

The first of these involves the dynamics of hominid groups. Kingdon speculates that terrestrial life would have involved new adaptations to resist a greater diversity of predators and competitors. This adaptation would likely have involved group coordination with intimidation displays. In particular, a restriction to relatively small home ranges would of reduced the possibility of simply moving on as a response to competition or predation. Climbing would have remained very important in predator avoidance, but it arguably would not be enough to cope with the eastern African ecology.

Speciation among the early hominids

Another consequence adduced by Kingdon is on the pattern of speciation of subsequent hominid lineages after the hominid-chimpanzee divergence. Kingdon describes many of the land areas bordering on the East African coastal forest, along with the prospects for ancestral hominids occupying and spreading among these different areas. He raises an interesting point about the Zambezi basin, which is largely open grassland with extensive floodplains and gallery forests and would therefore have been ideal hominid habitat despite the present lack of hominid fossils from the area.

As Kingdon describes each African region, he makes four basic points. First, the linear movement of ground apes along the coast and into the upland regions would have placed hominid populations at such distance from each other to radically restrict gene flow between them. Second, each of the areas, ranging from the Ethiopian highlands to the Zambesi basin would have presented unique ecological circumstances that would have demanded local adaptations on the part of the early ground apes. And third, the likely habitat of the ground apes extended along river courses. This means that the apes were likely not separated by the river drainages themselves, especially since many of them are highly seasonal, but instead they were separated by the interim habitats that were highly risky and resource-poor for a woodland-dependant ape. Last, the home ranges of the ground apes were probably small, again reducing the possibility of long-range dispersal and contact among populations.

I repeated the term "ground ape" repeatedly in the previous paragraph in reflection of Kingdon's other major assumption. He promotes the ground ape as a genuine stage in the evolution of the hominids. In other words, these apes once differentiated from chimpanzees were themselves highly successful occupants of the East African forest, and could themselves spread into adjacent habitats. All this occurred before the advent of of bipedalism as reflected in later hominids. This would imply that a substantial diversity of ground apes may have once existed, on the hominid lineage, but not themselves obligate bipeds. Kingdon suggests that known fossil samples like Orrorin or Ardipithecus might in fact represent a ground ape in this sense rather than bipedal hominids.

I am unconvinced by the idea that the squatting ground ape lived for a long period of time before evolving the adaptations to effective bipedality. Indeed, Kingdon's argument about the advantages of bipedalism would seem to suggest that it would emerge quickly if the opposing need for quadrupedal locomotion decreased. The idea that the ground ape stage lasted for a long time ignores the likelihood of competition from more effectively arboreal forms.

The biogeographic separation of hominid ancestors from chimpanzee ancestors (and gorilla ancestors) creates a set of interesting problems that Kingdon doesn't address. For example, if the apes on both sides of the East African arid strip were initially the same, did this original ape form survive for some time alongside the new ground apes? Or was that form itself a ground ape (as speculated below). Did this ancestral species survive alongside its bipedal descendants for some period of time? If Kingdon's idea about widespread diversification and long survival of the ground apes were true, then these apes must have coexisted for some long time with their bipedal descendants, especially if the ground apes had significant local adaptations to different African regions.

While Kingdon does support his argument that the early ground apes would have differentiated into different species with several assumptions, I found this unconvincing. Consider that chimpanzees are spread across over three thousand miles of West and Central Africa with clear evidence of recurrent gene flow among different subspecies over the past million years or more. Lowland gorillas also have an impressive geographic range, and orangutans today comprise two long-lasting geographic subspecies, which in the past must have extended to a greater diversity on the Asian mainland as well as across the Sunda shelf. The phylogenetic pattern represented by today's great apes indicates widespread species with highly conservative ecological adaptations. This allows subspecies to remain ecologically similar for long periods of time, and enables the exchange of genes long after the initial establishment of geographically distant (or periodically isolated) populations.

Kingdon does not consider this pattern, but his argument would indicate that the ground apes (or early hominids) diverged from the phylogenetic tendencies of other ape species because of their restricted home ranges and more intensive ecological exploitation of local environments. This hinges on the idea that bipedality really doesn't increase mobility, but instead radically decreases it.

But this argument fails to recognize the energetic consequences of bipedalism after it originates. It may be true that the initial transition to bipedalism would not be possible without the means of abandoning the dependence on quadrupedal movement in foraging and flight. It may also be true that obligate bipeds continued to be at a disadvantage compared to quadrupeds in predator avoidance and daily range. But the movement of bipeds over long distances would if anything have been less costly than that of a quadruped of the same size. And the social correlates of bipedality that Kingdon notes would seem likely to increase dispersal rather than decrease it. That is to say, despite a smaller home range, more cohesive groups with potentially larger group sizes present a higher chance of significant disparities in resource access among groups, a greater variance in group sizes, increased challenges for individuals integrating into new groups, and greater incentives to colonize and disperse over long distances. Bipeds are well equipped to move along linear habitats like gallery forests, and might have done so with maximum energetic efficiency in response to resource challenges or seasonal scarcity. An increased tolerance for higher population densities would have enabled an effective migration strategy in regions where seasonal resource shortfalls in one area may have been supplemented by movement to other areas with enough to go around.

This cuts to the nature of what it is to be a biped. Once the bipedal strategy arose, did it enable greater mobility or not? Were hominid groups highly territorial, and highly sedentary, or were they instead highly mobile? Did hominids tolerate local aggregations of multiple groups, or were they committed instead to intergroup conflict? This is where a chimpanzee model potentially misleads, since chimpanzees are both mobile and territorial, intolerant of contact with neighbors and capable of long-distance dispersal for maturing females. How would bipedalism change a chimpanzee's behaviors? An unanswered question.

Unanswered questions

An unanswered question is to what extent the focus on ground-accessible foods would have precluded the use of canopy foods. As Kingdon notes, canopy fruits are the major food source for chimpanzees today. Presumably, a greater adaptation to terrestrial life including bipedal locomotion would have greatly restricted the ability of early hominids to climb into the forest canopy and exploit fruiting trees. It seems possible that competition from other primates, such as cercopithecoid monkeys, might have precluded the effective dependence on a canopy resources anyway. But this line of inquiry needs to be developed further.

Another unanswered question involves the body proportions of early hominids. Australopithecines were exceptionally short compared to living humans. And there legs were hardly longer than similar-sized apes. These legs were very inefficient for bipedal movement compared to the long legs of subsequent hominids. But one possibility is that australopithecine legs may have been effectively adapted to a squatting posture. As far as I know, this hypothesis remains to be tested. Certainly if Kingdon is right about the small foraging ranges
of early hominids, the energetic disadvantages of short legs may have been relatively minor, because hominids would never have walked very far anyway. In this respect, even the home ranges of chimpanzees would be a poor model for the relatively small home ranges of early hominids. While anthropologists have tended to contrast australopithecines with early humans, who were believed to have had larger home ranges on the scale of those occupied by living hunter gatherers, it remains possible that australopithecine home ranges were smaller even than has usually been assumed.

And of course the biggest unanswered question appeared in the form of a key fossil shortly after the book must have been finished. What about Sahelanthropus? If Sahelanthropus was in fact on the hominid lineage, then it would seem to reject the model of differentiation proposed by Kingdon--Chad is a long way from the East African coastal forest. Conversely, if it is not on the hominid lineage, its importance to the model depends on what it is. If it is ancestral to hominids or to chimpanzees or gorillas, then it potentially informs us as to the anatomy of the common ancestor to these species. If so, that ancestor may have been substantially more ground ape-like than even Kingdon might have expected, at least if Brunet and colleagues (2002) are right about the foramen magnum placement and its implications for vertical posture. One might even envisage the hypothesis that chimpanzees and gorillas themselves are substantially derived from the common ancestor because they colonized the West and Central African equatorial forests long after the common ancestor lived (although presumably before the separation of chimpanzees and bonobos). This is a lot of mileage out of one fossil sample, but the absence of a fossil record for either chimpanzees or gorillas invites speculation.

References:

Brunet M, Guy F, Pilbeam D, Mackaye HT, Likius A, Ahounta D, Beauvillain A, Blondel C, Bocherens H, Boisserie JR, De Bonis L, Coppens Y, Dejax J, Denys C, Duringer P, Eisenmann V, Fanone G, Fronty P, Geraads D, Lehmann T, Lihoreau F, Louchart A, Mahamat A, Merceron G, Mouchelin G, Otero O, Campomanes PP, Ponce de Leon M, Rage JC, Sapanet M, Schuster M, Sudre J, Tassy P, Valentin X, Vignaud P, Viriot L, Zazzo A, Zollikofer C. 2002. A new hominid from the Upper Miocene of Chad, Central Africa. Nature 418:145Ð151.

Kingdon J. 2003. Lowly origin: Where, when, and why our ancestors first stood up. Princeton, NJ: Princeton University Press.

Langdon JH. 1997. Umbrella hypotheses and parsimony in human evolution: A critique of the Aquatic Ape Hypothesis. J Hum Evol 33:479Ð494.

Earliest hominids :: thoughts and roundup

Today I lectured on the earliest hominid samples for my graduate course on australopithecines. This is the first time I have been able to give a full lecture on the Late Miocene hominids up to A. anamensis since their discovery. The thing that struck me is that even if you study a set of fossils and literature for research, there are things that don't really strike you until you are standing in front of a full-screen slide projection talking about them.

One of the interesting things was to see the juxtaposition of the Lothagam and Tabarin mandibles with the new Ardipithecus and other early hominid samples. It's worthwhile remembering that not that long a time ago, Lothagam was the earliest hominid, and was argued to fit within the range of variation of A. afarensis (Hill et al. 1992). Tabarin, likewise, was not specially distinguishable from the A. afarensis sample (Ward and Hill 1987). They undoubtedly remain so, but chronologically they make sense as part of the Ardipithecus sample, which raises the anatomical question: are they Ardipithecus or something very like it? The answers are out there, I set the graduate students on the problem, and I have every confidence they will come up with an answer in the next couple of weeks.

Another observation is the very distinctive mandibular anatomy of A. anamensis The well-preserved mandibles all have very long postcanine tooth rows, certainly compared to the relatively narrow breadth of the dentition. Moreover, the mandibular symphysis is very long and slopes posteriorly to a greater extent than in later hominids (all this reviewed in Ward et al. 2001). This has a couple of interesting consequences. The first is that the mandible begins curving medially toward the symphysis relatively distally--around the first molars. This is exactly the morphology that was said to be hominid-like about Ramapithecus, and indeed the curvature itself is similar to later hominids. What is different about A. anamensis is the extent of the anterior dentition. This all tends to say that A. afarensis was substantially more orthognathic than earlier A. anamensis. A question is whether the other early hominids were similar to A. anamensis in this respect.

As yet, none of the earlier hominid mandibles are sufficiently preserved to evaluate the symphyseal morphology or the shape of the anterior dentition. The maxilla of Sahelanthropus is sufficiently preserved in the Toumai specimen, but it badly needs reconstruction to say for sure what its shape is (Brunet et al. 2002). From the basal view, it appears more apelike in shape than in A. afarensis, but the lower maxilla appears rather less prognathic than in AL 444-2 or other A. afarensis remains, raising doubt as to whether the front of the face was really more projecting than in later hominids.

The question left to answer with these missing observations is whether A. anamensis was intermediate between the earliest hominids and A. africanus in toothrow shape and its anterior dentition, or whether it diverges from both these samples. Its configuration appears unique at the moment, and seems to provide a distinctive combination of posterior tooth expansion, mandibular strengthening and buttressing, and the retention of a large anterior dentition.

How much of a dental difference is there between A. anamensis and Ardipithecus? I ask this because one of the most distinctive differences between A. afarensis and Ardipithecus is the dm1, which is very apelike in the Aramis ARA-VP-1/129 mandibular fragment (White et al. 1994). The apelike morphology is a mesiodistally long tooth, without buccolingual expansion, and without the elaboration of occlusal topology such as a marked talonid basin. Early hominids have expanded deciduous molars, and the dm1 in particular is quite molariform (as in the Taung mandible). But the morphology in A. anamensis is close to that described for Ardipithecus. The tooth is best preserved in the KNM-KP 34725 dentition (and is less well preserved but consistent with this form in KNM-KP 31712). The tooth is much longer mesiodistally than buccolingually, and it is narrower than any in the A. afarensis sample (Ward et al. 2001). The only notable difference between this tooth and the Aramis specimen is its larger size, being nearly 2 mm larger in both length and breadth, which makes it more similar in size to an A. afarensis tooth, though not in shape.

What is lacking now is an appreciation of the probable level of variation among the dentitions within a single sample. Here, we face the problem of comparing multiple samples separated by hundreds of thousands of years, without even the possibility of a test of significance between them. For example, the mandibular premolars of A. anamensis are described by Ward and colleagues (2001) as being similar to Ardipithecus in having a unicuspid P3 and a less expanded talonid on the P4 compared to A. afarensis. But the P3 form is highly variable at the single site of Hadar, as the form of the upper canine shows substantial variation in only a few specimens at Laetoli and Hadar. If the earlier hominids are all fairly similar, is this to be interpreted as an important degree of similarity compared to later hominids? Is there any substantial evidence of multiple species here at all? Tough question (Ward et al. 2001 duck it by noting that descriptions of Ardipithecus and Orrorin are lacking).

It is probably necessary to look into the quantification of nonmetric variation within dental samples of early hominids. This will be tough since there are really not enough teeth to create good seriations to examine character variation. But the diagnosis of A. kadabba (Haile-Selassie 2001) is an interesting case study in the delineation of minor morphological details. In this instance, only one specimen of each potential subspecies (now species, and one specimen published, although surely the author saw a broader sample of unpublished remains) were compared with each other. Each difference was tabulated as part of the subspecies diagnosis (without direct consideration of whether the traits might vary in earlier or later species or samples). How likely is it that two fossils within a sample will differ in the presence of a shallow mesial fovea on P3? Or in the diagnosis of the species (Haile-Selassie et al. 2004), how likely is it that two specimens will differ as A. kadabba and O. tugenensis evidently do by a more circular canine shape in occlusal view? This is the important kind of question for testing the validity of the diagnosis, but it is as yet unanswered.

References:

Brunet M, Guy F, Pilbeam D, Mackaye HT, Likius A, Ahounta D, Beauvillain A, Blondel C, Bocherens H, Boisserie JR, De Bonis L, Coppens Y, Dejax J, Denys C, Duringer P, Eisenmann V, Fanone G, Fronty P, Geraads D, Lehmann T, Lihoreau F, Louchart A, Mahamat A, Merceron G, Mouchelin G, Otero O, Campomanes PP, Ponce de Leon M, Rage JC, Sapanet M, Schuster M, Sudre J, Tassy P, Valentin X, Vignaud P, Viriot L, Zazzo A, Zollikofer C. 2002. A new hominid from the Upper Miocene of Chad, Central Africa. Nature 418:145-151.

Haile-Selassie Y. 2001. Late Miocene hominids from the Middle Awash, Ethiopia. Nature 412:178-181.

Haile-Selassie Y, Suwa G, White TD. 2004. Late Miocene teeth from Middle Awash, Ethiopia, and early hominid dental evolution. Science 303:1503-1505.

Hill AH, Ward S, Brown B. 1992. Anatomy and age of the Lothagam mandible. J Hum Evol 22:439-451.

Leakey MG, Feibel CS, MacDougall I, Walker A. 1995. New four-million-year-old hominid species from Kanapoi and Allia Bay, Kenya. Nature 376:565-571.

Semaw S, Simpson SW, Quade J, Renne PR, Butler RF, McIntosh WC, Levin N, Dominguez-Rodrigo M, Rogers MJ. 2005. Early Pliocene hominids from Gona, Ethiopia. Nature 433:301-305.
Review on this site

Senut B, Pickford M, Gommery D, Mein P, Cheboi K, Coppens Y. 2001. First hominid from the Miocene (Lukeino formation, Kenya). C R Acad Sci Paris Sciences de la Terre et des planetes 332:137-144.

Ward CV, Leakey MG, Walker A. 2001. Morphology of Australopithecus anamensis from Kanapoi and Allia Bay, Kenya. J Hum Evol 41:255-368.

Ward SC, Hill A. 1987. Pliocene hominid partial mandible from Tabarin, Baringo, Kenya. Am J Phys Anthropol 72:21-33. PubMed

White T, Suwa G, Asfaw B. 1994. Australopithecus ramidus, a new species of early hominid from Aramis, Ethiopia. Nature 371:306-312.

WoldeGabriel G, White TD, Suwa G, Renne P, deHeinzelin J, Hart WK, Helken G. 1994. Ecological and temporal placement of early Pliocene hominids at Aramis, Ethiopia. Nature 371:330-333.

Ardipithecus remains from Gona

News story at MSNBC

News story at BBC

Paleoanthropologist Sileshi Semaw has a new paper in Nature describing fossils of Ardipithecus from the Gona research area in Ethiopia. Semaw is a researcher at the CRAFT Stone Age Institute at the University of Indiana. (I would just like to enter a note here that the web pages of the CRAFT Institute and the Department of Anthropology at Indiana are extraordinarily difficult to find and use. Can you imagine a university department with a Flash-only website? Compared to this, the CRAFT page is easy to use, but hard to find. The most important problem is that the word "CRAFT" appears nowhere on the site or its address (www.stoneageinstitute.org), and so searches don't find it! Maybe it will move up the Google rankings soon....)

The fossils come from a locality called As Duma, and likely date to between 4.3 and 4.5 million years ago, based on stratigraphic and paleomagnetic considerations. The remains are mostly dental, with three substantially preserved dentitions and several isolcated teeth. There is also a fragment of mandibular corpus and a mandibular ramus matched with one of the mandibular series. Otherwise, there are three hand bones (phalanges) and one toe bone.

Is there evidence for bipedality?

As is the case for other remains from Ardipithecus, here it is argued that the toe bone represents a biped, because the proximal articular facet is oriented upward (dorsally). This means that the toes were characteristically dorsiflexed rather than plantarflexed, and therefore were used for walking but not substantially for gripping objects.

Why are the fossils assigned to Ardipithecus?

The teeth resemble known dental remains of Ardipithecus. General similarities include the size of the postcanine teeth, the height of the upper and lower canines, and the diamond-like shape of the upper canine in labial view (the broadest mesiodistal point is about halfway between the apex and base of the crown). These features are not entirely compelling because of the notable variability among early australopithecines, including A. anamensis and A. afarensis. According to Semaw and colleagues,

The P4 crown is mesiodistally compressed with an oval plan, a simple cusp pattern and a single root matching the Aramis (Ethiopia) specimens of Ardipithecus ramidus and distinct from the triangular/quadrangular cervical cross-section of Australopithecus multi-rooted P4.

In other words, the fossils "fit" well with Ardipithecus by virtue of their anatomy and date, and have at least one tooth crown that is fairly distinctive.

Is there any other Ardipithecus insight?

The evolving story of Ardipithecus is that it is a likely ancestor of later hominids. Contrast this with the situation in 1995, shortly after the initial announcement of both Ardipithecus ramidus and Australopithecus anamensis. These two hominid species overlapped in time, but had clear anatomical differences. Although Ardipithecus had an earlier range of dates (4.1 million to 4.4 million years ago according to White et al. 1994), it was viewed to be morphologically distinct from all later hominids, in particular having molars that were described as smaller, with thinner enamel and more chimpanzee-like morphology than any known australopithecine.

But being described as "chimpanzee-like" has obfuscated much about the anatomy of Ardipithecus. Consider the dental features of A. afarensis compared to living apes and humans: it has thick molar enamel, large molars, molars that increase in size posteriorly, canines that are variable in height, ranging on the small end to incisor-sized, and on the large end still much shorter than females of living ape species. Australopithecines evolved from apes with large projecting canines. It is unclear whether the Miocene apes that were ancestral to later hominids had thick or thin enamel, or large or small molars, because these traits are variable among Miocene hominoids. But they certainly had smaller molars and premolars than the australopithecines, and could not have matched their enamel thickness. Therefore, it is exceedingly likely that the early ancestors of the australopithecines had smaller molar sizes, thinner molar enamel, larger canines, and cutting P3's. Compared to A. afarensis these ancestors would be chimpanzee-like in these details.

Is this what the initial description of the Aramis hominids described? Let's consider what White and colleagues (1994) wrote:

Morphology of the known Aramis canines, however, diverges from that of known apes. The upper canines are slightly less incisiform than homologues of A. afarensis but more incisiform than any ape counter part, with occlusally placed terminations of the mesial and distal apical crests. The visual result of apically placed crown shoulders is a low, blunt canine tooth relative to more projecting ape canines, a morphological condition which may have important evolutionary implications. The Aramis upper canine is large buccolingually, formaing a further contrast with mesiodistally elongate African ape canines. Wear pattern also differs significantly from the ape condition. Mandibular canine wear does not show the pattern typical of great apes. (p. 308)
The broken canines and lower P3 in ARA-VP-1/128 and -6/1 exhibit thin enamel distinct from previously known hominid conditions. Canine enamel thickness approximates the chimpanzee condition, with a lack of apical thickening we observe in other hominids. ... The relatively thin enamel and large size of the Aramis canine, together with its primitive P3 morphology, suggest a C/P3 complex morphologically and functionally only slightly removed from the presumed ancestral ape condition. (p. 308)
The ARA-VP-6/1 P3 is markedly more apelike than any A. afarensis homologue in its high protoconid with extensive buccal face and steep, distolingually directed transverse crest. In these features it is indistinguishable from ape homologues. (p. 308)
Molar morphology resembles the A. afarensis condition, but lacks the extreme buccolingual breadth relative to mesiodistal length common in that species. The 'serrate' root pattern and deep dentine wear on the buccal cusps described in A. afarensis, Tabarin, and Lothagam also occur in Aramis specimens. All molars lack the extensive crenulation and broad occlusal foveae characteristic of modern chimpanzees, or the high cusp topography of gorillas. (p. 309)

On these dental characters, the Aramis hominids do correspond to what we might expect of an ancestor of later hominids. The "chimpanzee-like" character is canine enamel thickness. Other characters are either near or within the range of later hominids, or more apelike. In this context, apelike means that these characters are not specifically similar to any living ape, and indeed the living apes are substantially different from the Aramis remains in several characters. In particular, the chimpanzee-like dm1 is not specifically like chimpanzees, but instead is in the range of all living and fossil apes. This is a plesiomorphy, not a derived similarity with chimpanzees.

Aramis enamel thickness is similar to chimpanzees not only in the canines but also in the molars. But enamel thickness itself is a problematic character. White and colleagues (1994) say:

A distinct difference from known hominids occurs in molar enamel thickness. Maximum radial enamel thickness of crown faces can be measured in three fractured Aramis specimens and it ranges from 1.1 to 1.2 mm buccally, at or near the unworn cusp apex, perpendicular to the enamel-dentine junction. These values are comparable to the uppermost range of our homologous enamel thickness values measured on broken P. troglodytes molars (n=22; M1 through to M3). Equivalent measures in A. afarensis range from 1.4 to 2.0 mm (n=5). (p. 309)

Of course, this places the Aramis specimens intermediate between chimpanzees and other early hominids. White and colleagues (1994) did not report the range of the chimpanzee comparative sample, so it is hard to say what the import of the enamel thickness of Aramis really is. Haile-Selassie (2001, 180) writes:

Another candidate for hominid ancestry is the recently described Orrorin tugenensis. The authors report thick molar enamel and suggest that Ardipithecus and African apes are commonly derived in having 'thin' enamel. However, enamel thickness is a complex character and intraspecifically variable, and its within-tooth three-dimensional patterning is characteristically expressed both serially and taxonomically. Therefore the simplistic dichotomous characterization of enamel as either 'thick' or 'thin' on the basis of unspecified measurements of naturally broken sections (as was done in the Orrorin report) is problematic.

Of course we can compare this quote with the report of Senut and colleagues (2001, p. 4), "Enamel thickness at the apex on the paraconid [of the BAR 1000'00 left M2] is 3.1 mm. This is comparable to other hominids, Ardipithecus excluded." There certainly does seem to be a difference between the Middle Awash sample and Lukeino in enamel thickness, based on the limited number of examples. It is a shame that the range of variation in living hominoids has not been better reported in the context of these early hominids. But even if everything rises or falls based on enamel thickness alone, we have one sample (Middle Awash) with an intermediate morphology between australopithecines and chimpanzees, and another sample (Lukeino) with an australopithecine-like morphology, which is probably also more similar to earlier Miocene apes like Ouranopithecus.

White and colleagues have clearly moved toward an interpretation of the early hominids in which the taxonomic diversity was minimal. For example, Haile-Selassie, Suwa and White (2004, p. 1505) wrote:

Metric and morphological variation within available small samples of late Miocene teeth attributed to A. kadabba, O. tugenensis, and S. tchadensis is no greater in degree than that seen within extant ape genera. Despite claims of molar enamel thickness differences among these late Miocene fossils, we question the interpretation that these taxa represent three separate genera or even lineages. Given the limited data currently available, it is possible that all of these remains represent specific or subspecific variation within a single genus.

One may point out that if the Asa Koma and Lukeino hominids actually do represent a single species, they are properly referred to Orrorin (or Ardipithecus) tugenensis, rather than A. kadabba. One may speculate that it is for this reason that Haile-Selassie, Suwa and White (2004) focus on the genus level in their argument, since it is at this level that Ardipithecus has priority. It is worth mentioning that the enamel thickness in the A. anamensis molars is more similar to later australopithecines than to Ardipithecus, with measurements around 1.9 mm on the protocone of KNM-ER 30748 (Ward et al. 2001). Again, the measurements here emphasize the problems with comparison of such values, since measurements on fossils are taken where breaks naturally occur, and with the possibility of attrition on the teeth.

At any rate, this argument continues with the discovery of the Gona Ardipithecus remains. According to the BBC, Tim White

agreed it was becoming apparent A. ramidus was an important species that was a very plausible ancestor to later hominids. "It's already clear that we're seeing the basic grade from which Australopithecus evolved,"he told the BBC News website.

One feature of these hominids points toward that conclusion--even at the expense of A. anamensis. The reconstruction of the GWM-3/P1 mandible has a shape similar to AL 288-1 (Lucy) with diverging (V-shaped) tooth rows. Semaw and colleagues contrast this morphology with A. anamensis, where the tooth rows are oriented parallel to each other.

Is it possible that the Kanapoi and Allia Bay hominids were a side-branch of an Ardipithecus--A. afarensis lineage? Sure, there is actually little to preclude this scenario beyond the relatively thicker enamel and larger molars of the sample assigned to A. anamensis. It would be helpful to have a full characterization of the variability of these samples as they existed over time, to judge the magnitude of change necessary under different evolutionary scenarios.

But there is one more point on which White and colleagues (1994) described Aramis as chimpanzee-like: the basicranium.

The ARA-VP-1/125 and -1/500 specimens represent adult temporal and occipital regions. Both are smaller than their A. afarensis counterparts, but no female temporal is known for that species. The Aramis cranial fossils evince a strikingly chimpanzee-like morphology that includes marked pneumatization of the temporal squama which even invades the root of the zygoma. (p. 310)

And the postcranial remains are described as displaying "a mosaic of characters usually attributed to hominids and/or great apes" (p. 311). In fact, the known postcrania are an area of resemblance between Ardipithecus and A. anamensis, since both these samples appear to have relatively long forelimb bones compared to later hominids (this comparison is imperfect since body size is not known from other evidence). And the basicranium of A. anamensis was probably similar to Aramis, considering that the KNM-KP 29281 temporal appears to have been pneumatized in the same areas as its Aramis counterpart where it is preserved (Ward et al. 2001). Much appears to have been similar between these two samples, just as much is similar among the earlier hominid samples.

Is this a single lineage changing over time? That would be an appropriate null hypothesis to pursue, and there is little evidence tending to refute it now.

References

Semaw S, Simpson SW, Quade J, Renne PR, Butler RF, McIntosh WC, Levin N, Dominguez-Rodrigo M, Rogers MJ. 2005. Early Pliocene hominids from Gona, Ethiopia. Nature 433:301-305. Full text at Nature

Bipeds at Lukeino

The earliest skeletal traces of bipedalism come from the fossils from Lukeino, in the Tugen Hills of western Kenya. A single isolated molar was found here in 1975 by Martin Pickford. Renewed surveys beginning in 2000 recovered additional specimens, including three proximal femora, a distal humerus with shaft, and most of a mandible. The deposits date to approximately 6 million years ago (Senut et al., 2001).

Human and chimpanzee femora are mostly similar on their proximal ends. They both have femur necks of about the same relative length, and both have angles between the neck and the shaft of between 110 and 130 degrees (Aiello and Dean 1990). This means that fossil remains of proximal femora are not the most obvious indicators of bipedal locomotion.

But a few telling differences divide the two species. The most functionally significant difference is the distribution of cortical bone in the femur neck. The long bones have dense layers, called cortical bone, that make up the shaft and the surfaces of the proximal and distal ends. Much of the proximal and distal ends of the bones are, however, made up of thin plates of bone arranged in a spongy texture, called trabecular bone. The distribution of cortical bone compared to trabecular bone in the femur neck reflects the way that force was habitually applied to the bone during life. In a biped, the cortical bone is thicker at the bottom of the femur neck than at the topÑbecause while the mass of the body applies bending force to both the top and bottom of the femur neck, the bending at the top is reduced by the pull of large muscles that support the body. In non-bipeds like chimpanzees, the cortical bone is equally thick on both the top and bottom of the femur neck (Lovejoy 1988). The difference between these thicknesses on the Lukeino femora shows they were bipedal, similar to those of later known hominid fossils (Galik et al. 2004).

More on Lukeino

More on bipedalism

Filed under

Forelimbs and climbing in early hominids

Compared to their small body mass, the forelimbs of early hominids are both longer and more muscular than those of recent humans. The arms are shorter than in chimpanzees, but the areas of muscle attachment have greater strength. Strength is especially evident in a large humerus from the Ethiopian site of Maka, dating to 3.4 million years ago (White et al. 1993). The prominent muscle attachments on this large specimen indicate that the individual was very strong, but also that most muscle exertion was in a single preferred pattern. The bone is thicker than chimpanzee humeri of equal length, again reflecting its mechanical strength.

Several other forelimb fossils show a similar pattern. These include a relatively large distal humerus fragment from Kanapoi, a large radius from the contemporary site of Sibilot Hill, and a distal section of humerus exhibiting large muscular crests from Lukeino (Senut et al. 2001). Additionally, the hamate bone preserved at the Kenyan site of Turkwel preserves part of a very large carpal tunnel region, indicating strong tendon attachments into the hand (Ward 1999). Finally, the finger bones of early hominids are curved. This feature occurs wherever Early Pliocene hominid finger bones are preserved (Stern and Susman 1983).

The most probable interpretation for the strength of the forelimbs among these sites is that early hominids were effective climbers. Hominids do not have grasping feet. Apes use all four limbs in a variety of climbing positions, but hominids use their arms mainly to pull the body upward with the legs providing upward propulsion but no gripping support. Such use would lead to large muscle development in the arms, both because they bore more of the force of climbing and because they functioned in a more specialized way.

But despite the strength of the large fossil arms, smaller individuals show a somewhat different pattern. For example, the AL 288-1 skeleton preserves much of both humeri and ulnae, and these small bones bear minimal muscle markings. The difference in forelimb anatomy between large and small individuals may mean either that males climbed more frequently than females or that the biomechanics of climbing among malesÑwith a mass much larger than femalesÑplaced much greater muscle requirements on the male forearm.

Males may have performed other tasks with their arms, including wielding weapons or other competitive behaviors such as threat displays. The hands of early hominids, as represented at Hadar, have fingers that are similar to living humans in their relative sizes. These proportions are very different than in chimpanzees, which have a much shorter thumb that departs the hand much closer to the wrist, as well as much longer fingers. The human-like proportions of the hands underline the fact that climbing in these obligate bipeds was done in a human-like manner, and their hands did not function in a chimpanzee-like suspensory role. Also, early hominids may have gripped clubs or other items that do not require forceful fingertip control. Chimpanzees wield large branches in the context of threat displays, and it is possible that early hominids also had such behaviors or even more menacing ones, enabled by the power of arms like those from Maka.

However, early hominid hands were clearly not used for making stone tools. Two sources of evidence argue against the ability of these early hominids to modify stone. First, no stone tools have yet been found earlier than about 2.6 million years ago, long after the early Hadar sample. Second, the Hadar hands and other early hominid hand bones lack important features that reflect a powerful grip useful for tool production (Marzke 1983). Most noticeably, the distal finger bones, or phalanges, lack the large fingertip surfaces, called apical tufts, which are found in living and fossil humans (Bush et al. 1982). These large fingertips increase the surface area used for gripping, and allow the forceful grip necessary for tool production. The apical tufts at Hadar are relatively much smaller than those in human fingers (Stern and Susman 1983).

Syndicate content