john hawks weblog

paleoanthropology, genetics and evolution

quotes

  • Mailbag: Remaking

    Wed, 2010-02-24 07:20 -- John Hawks

    Found this
    "The Earth is not finished, but is now being, and will forever more be-remade."
    (C.R. Van Hise, 1898)
    "Human evolution is not finished, but is now being, and will forever more be-remade."

    Reminds me of Darwin's last line in the Origin...

  • Quote: Marge Simpson on evolution

    Tue, 2010-02-09 18:26 -- John Hawks

    The local station is playing the "creationism" episode of The Simpsons today -- maybe in honor of Darwin this week? A Marge Simpson quote from the end:

    Thank you for opening my eyes, Lisa. I can't wait to see what evolution will do next! Maybe a bird with a people face. Or a bear with pants on.

  • Quote: Planning by Burnham

    Mon, 2010-01-18 10:21 -- John Hawks

    Daniel H. Burnham, Chicago architect and city planner (1846-1912):

    Make no little plans; they have no magic to stir men's blood and probably themselves will not be realized. Make big plans; aim high in hope and work, remembering that a noble, logical diagram once recorded will not die, but long after we are gone be a living thing, asserting itself with ever-growing insistence. Remember that our sons and our grandsons are going to do things that would stagger us. Let your watchword be order and your beacon beauty.

    Tags: 
  • Quote: Nero Wolfe on bipeds

    Mon, 2009-11-16 16:20 -- John Hawks

    Nero Wolfe, in The Rubber Band, by Rex Stout:

    What is it that he has been trying so desperately to preserve, with all his ruthless cunning? His position in society, his high repute among his fellow men, his nimbus as a master biped. Well, he will lose all that, which should be enough for any law.

    This, in a book that used "biped" once earlier. It's got me thinking of lost hominin nimbuses.

    Nimbi?

    Tags: 
  • Quote: Nick Bostrum on mucking around with genes

    Fri, 2009-09-18 08:02 -- John Hawks

    Oxford University's Future of Humanity Institute is headed by Nick Bostrum, who gave an interview to Time writer Eben Harrell:

    The view that the human genome is perfect just the way it is, is absurd. Even a cursory look at human history reveals there is also much in human nature that is horrifically bad. When a species with our track record thumps its chest and declares itself to be already perfect — with zero room for improvement — it is hard to know whether to laugh or cry. However, it doesn't follow from this that we will necessarily improve things if we start mucking around with our genes. We could make things worse.

  • Quote: Fisher on the limits of diffusion

    Thu, 2009-09-17 22:16 -- John Hawks

    R. A. Fisher and Sewall Wright introduced diffusion approximation methods into genetics; Fisher (1937) was the first to consider spatial disperal using a reaction-diffusion model. I found this quote a useful expression of his acknowledgment of the limits of the model:

    The use of the analogy of physical diffusion will only be satisfactory when the distances of dispersion in a single generation are small compared with the length of the wave. In reality diffusion is a complex process, compounded often of the diffusion of gametes, and that of larvae, in addition to adult forms; a more exact treatment than that supplied by a simple coefficient would involve the interaction of these components, and the stages at which the selective advantage was enjoyed. So far as it is applicable, the analogy of physical diffusion, therefore, greatly simplifies the problem (355-356).

    The paper has no references.

  • Quote: Missing link, circa 1940

    Mon, 2009-08-31 00:56 -- John Hawks

    Some dialogue from "Too Many Husbands", as Melvyn Douglas and Fred MacMurray get on each others' nerves:

    Melvyn Douglas: All right, spell "Pithecanthropus erectus."

    Fred MacMurray: Why?

    Melvyn Douglas: Because I say you can't.

    Fred MacMurray: All right. P-I-T-H-E-C-A-N-T-H-R-O-P-U-S-E-R-E-C-T-U-S.

    Jean Arthur: Is that right?

    Melvyn Douglas: Yes.

    Jean Arthur: What is it?

    Melvyn Douglas: It's the missing link between ape and man. Like an athlete.

    And later...

    Fred MacMurray: It's my table, I want a steak!

    Melvyn Douglas: A glorious night for romance. And you want to tear a cow apart with your teeth!

  • Quote: Peter Turchin on the "bugbear" of randomness

    Sun, 2009-08-30 16:18 -- John Hawks

    I'll probably have some more material on quantitative analysis of dispersal in the few days. Here's a quote from Peter Turchin (1998:17-18):

    Of course, we do not know that animals truly move at random, like flipping coins to decide whether to turn right or left. Each individual could be a perfect automaton, rigidly reacting to environmental cues and its internatl states in accordance with some set of behavioral rules. However, even if this were true, we might still choose to model behavior of such animals stochastically, because we would not have the perfect knowledge of all the deterministic rules driving these animals. Even if we did, we might not want to include them all in our dispersal model, since such a model would have an enormous number of parameters and would require a very accurate representation of all environmental "micro-cues." The point is that randomness is a modeling convention. Because it is impractical, and not even helpful, to attempt to model individual movement deterministically, we use a more parsimonious probabilistic model.

    I'm pausing the quote to point out my boldface. It has become computationally feasible in the last few years to model enormously complicated scenarios with individuals acting pseudo-deterministically. The most popular use of such modeling is to try to constrain dispersal models by some geographic conditions, such as local habitat richness, rainfall, or altitude (see also, "One model, hold the extra parameters"). Of course, animals really do disperse in ways that depend on such geographic parameters. The question is whether any datasets are sufficient to test models involving so many parameters.

    This approach is aptly termed behavioral minimalism (Lima and Zollner 1996). In essence, we adopt a thermodynamic approach: the behavior of individuals is erratic, or irregular, but the redistibution process at the population level has many regular features. There is a direct analogy with with thermodynamic theory. The motion of each gas molecule is chaotic and essentially unpredictable, and can only be described probabilistically. When dealing with large numbers of molecules, however, the laws at the aggregate level are for all intents and purposes deterministic. Similarly, the problem of biological dispersal can be treated by starting with a probabilistic description of individual movements (in other words, formulating the problem as a random walk), and then approximating the redistribution process of the ensemble of individuals with a deterministic equation, diffusion.

    The effective scale of stochastic versus deterministic processes is important. I'm chiefly interested in the dispersal of adaptive genes in human populations, for which the deterministic approximation may be considered to have become more and more relevant over time, as the population sizes of regional populations grew. Still, the present pattern in many cases may reflect the stochasticity of populations from earlier time periods, when they were smaller. And formerly important deterministic processes, such as the adoption of agriculture, may no longer be directly observable. So how do we model variance?

    The thermodynamic approach to dispersal does not have to assume that the movement of each "particle" is completely random. The important feature of this approach is that we can control the degree of realism in the model. Environmental factors that have strong effects on movement can be included explicitly in the model, while other factors that have weak effects (or about which we have no information) are included in the stochastic component.

    This would incorporate the geographic modeling approaches mentioned above -- deterministic processes related to spatial variance of habitat or dispersal potential. But then the important step must be to find a minimal deterministic model to account for the data, and then test it with other observations -- such as more extensive genetic sampling, archaeological information, or historical documentation.

    References:

    Turchin P. 1998. Quantitative Analysis of Movement. Sinauer, Sunderland MA.

  • Quote: Osborn on the Fayum beds

    Tue, 2009-08-25 08:30 -- John Hawks

    Another passage from Henry Fairfield Osborn, "Hunting the ancestral elephant in the Fayûm desert":

    As we ascended, we noted suddenly the entire disappearance of the sea-shells, adn entered purely freshwater desposits, where the land-filling process gained supremacy. We climbed tier above tier, and finally reached the great, partly level, partly rolling, platform stretching off in each direction as far as the eye could reach. Here we saw the sandy delta deposits of a river system which was much older than the Nile.

    This was our destination.

    We slowly recognized this as the level on which all our explorations were to be made. The giant trunks of fossilized trees began to appear -- trees that were borne down the rivers from the great forests of the south, their petrified trunks, from thirty to seventy feet in length, protruding from the sand, which was an auspicious sign of the proximity of the remains of quadrupeds, for both were washed down together. Remains of crocodiles, also, and of great turtles, began to be seen, and we were convinced that we were in the very fossil-bearing tier itself.

    I will note an impression I had while reading the article, that it's very interesting to see how paleontologists dealt with certain issues in the time before acceptance of continental drift. The passage immediately before the one quoted here dealt with the "northward growth" of Africa into the Mediterranean, from the Fayum to the present coast, entirely as a process of river discharge.

    References:

    Osborn HF. 1907. Hunting the ancestral elephant in the Fayûm desert: Discoveries of the recent African expedition of the American Museum of Natural History. The Century Magazine 74(6):815-835.

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Neandertals

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Denisova

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Acceleration

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Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.