john hawks weblog

paleoanthropology, genetics and evolution

creationism

  • Creationists protest National Museums of Kenya

    Thu, 2007-02-08 20:37 -- John Hawks

    OK, I have to take a moment off from Just Science week, to note this AP article about creationist protests of the National Museums of Kenya:

    "I did not evolve from Turkana Boy or anything like it," says Bishop Boniface Adoyo, head of Kenya's 35 evangelical denominations, which he claims have 10 million followers. "These sorts of silly views are killing our faith."

    He's calling on his flock to boycott the exhibition and has demanded the museum relegate the fossil collection to a back room -- along with some kind of notice saying evolution is not a fact but merely one of a number of theories.

    It is hard to tell how much trouble this actually is. I tend to think cranks like this are usually just publicity-seeking, and the real danger is when they get some influence in the government. But that may be where things are at. I've seen more local reports on the issue, so I'm glad the AP has picked up the story and more people will see it.

    According to the article, the museum is worried about people wrecking the exhibit:

    The museum, which attracts around 100,000 visitors a year, is taking no chances.

    Turkana Boy will be displayed in a private room, with limited access and behind a glass screen with 24-hour closed-circuit TV. Security guards will be at the entrance.

    "There are issues about the security," said Dr. Emma Mbua, the head of paleontology at the museum. "These fossils are irreplaceable and we wouldn't want anything to happen to them."

    Insurance coverage could run into millions of dollars, she added.

    This seems to me like the most dangerous part -- protests or threats increase the costs of exhibiting and make it harder to conduct the museum's education work. It's an asymmetrical strategy -- the museum has priceless things in a fixed place, and I hope it's a strategy that gets stopped in its tracks.

  • Evolution-doubting and illiteracy, part 3

    Tue, 2006-08-15 16:29 -- John Hawks

    Last week's Science has an article about "public acceptance of evolution" by Jon Miller, Eugenie Scott and Shinji Okamoto. The article covers results of polls that demonstrate that a low proportion of Americans believe that humans evolved, compared to relatively higher proportions in Europe and Japan.

    Beginning in 1985, national samples of U.S. adults have been asked whether the statement, "Human beings, as we know them, developed from earlier species of animals," is true or false, or whether the respondent is not sure or does not know. We compared the results of these surveys with survey data from nine European countries in 2002, surveys in 32 European countries in 2005, and a national survey in Japan in 2001 (5). Over the past 20 years, the percentage of U.S. adults accepting the idea of evolution has declined from 45% to 40% and the percentage of adults overtly rejecting evolution declined from 48% to 39%. The percentage of adults who were not sure about evolution increased from 7% in 1985 to 21% in 2005. After 20 years of public debate, the public appears to be divided evenly in terms of accepting or rejecting evolution, with about one in five adults still undecided or unaware of the issue. This pattern is consistent with a number of sporadic national newspaper surveys reported in recent years (6-10) (Miller et al. 2006:765).

    There's no question that the central point of the article is correct -- a large proportion of Americans reject the idea that evolution explains many of the central facts of life. And I think that Miller, Scott and Okamoto hit upon most of the essential reasons why: the strength of American fundamentalism, the incorporation of creationism into political platforms, and lack of information about "modern genetics". I wonder whether there are additional factors that might be explored, such as a greater skepticism of pronouncements from "experts", or wider awareness of frauds -- side effects of the American political experience and its post-Watergate distrust of authority. But certainly the overwhelming majority of American attitudes toward evolution are influenced by religion, one way or another.

    However, I noticed another thing reading this article: just how badly written these poll questions apparently are. Take the one cited above:

    "Human beings, as we know them, developed from earlier species of animals."

    Human beings have never "developed" from earlier species of animals. We evolved from them. Adult human beings develop from zygotes, embryos, fetuses, infants, children, and adolescents. And of course, some of these latter categories are themselves human beings (teenagers being the main exception!). That's why "evolutionary developmental biology" is called evo-devo instead of devo-devo!

    Now, I can understand why a pollster might substitute "developed" for "evolved". "Evolved" is a "charged word", and people might react to it strongly. "Developed" has an everyday meaning that people understand, which isn't necessarily connected to ontogeny.

    But really, who exactly is going to "react strongly" to the word evolution, but is going to agree with the notion that human beings developed from earlier species of animals? Somebody who would say, "Oh, well, if we didn't evolve, then I guess I can accept that we developed from monkeys." It's an empty set!

    The article presents another set of questions from one of these polls:

    For example, only a third of American adults agree that more than half of human genes are identical to those of mice and only 38% of adults recognize that humans have more than half of their genes in common with chimpanzees. In other studies (1, 14, 15), fewer than half of American adults can provide a minimal definition of DNA. Thus, it is not surprising that nearly half of the respondents in 2005 were not sure about the proportion of human genes that overlap with mice or chimpanzees.

    Or just maybe, they failed to recognize these "facts" because they are nonsensical!

    For example, "more than half of human genes are identical to those of mice"? Let's start by defining some terms. "Identical" generally means "exactly the same". Two identical genes should have the same nucleotide sequence, no? Now, we haven't found all the genes in the human genome. And further, we don't know what segments of DNA should really be included in any given "gene", since each may be regulated by sites that are very far from the coding sequence. So we will want to be very cautious no matter what we claim about similarities between humans and other species.

    But let's consider the known coding sequences alone. A sample of some 13,000 genes in the human and draft chimpanzee genomes shows over 39,000 amino-acid coding differences between the two species. This means that a given human will differ from a chimpanzee by an average three amino-acid coding substitutions per gene. Certainly these are not equally distributed -- some genes are more different than others. But far fewer than half of this sample of genes are identical in their amino acid sequences. Even fewer -- only around one in ten -- are identical in their nucleotide sequences, including synonymous substitutions. If we include intronic sequences as part of each gene, then none of the 13,000 genes have identical sequences in humans and chimpanzees. Mice, of course, are more different from us than chimps.

    OK, let's be generous and assume that the poll intended something that makes sense, like "more than half of nucleotides are shared between human and chimpanzee genomes." On the one hand, the obtuseness of the question would seem to vindicate those Americans who can't provide "a minimal definition of DNA". I mean, the poll doesn't understand DNA, so why should they?

    On the other hand, this looks like what we in the professoriate would call a "trick question". As in:

    "Hmm.... The book says that humans and chimpanzees have ninety-eight percent sequence identity, but this question says 'over half'. Now I know that ninety-eight percent is more than half. But why would the question just make up a number that was so far off? Is the question asking about something I didn't study? And it doesn't say 'nucleotide sequence', it says 'genes'. And I know that there aren't any full gene sequences that are identical. And this other question says "in common with." What the hell does that mean? Is it about genes versus pseudogenes? Oh, crap, why didn't I take economics instead?"

    Now, sure, there probably aren't very many people who answer these poll questions the "wrong" way because of objections like mine. But when scientists can't seem to get their facts straight, just how exactly are nonscientists supposed to become "literate"?

    I actually think 38 percent is pretty impressive penetrance for the human-chimpanzee factoid. After all, only twice that many know that the Earth revolves around the sun.

    References:

    Miller JD, Scott EC, Okamoto S. 2006. Public acceptance of evolution. Science 313:765-766. DOI link

  • Connectedness

    Tue, 2006-08-15 00:38 -- John Hawks

    Lawrence Krauss has commentary in the NY Times about the recent Kansas State Board of Education elections:

    But perhaps more worrisome than a political movement against science is plain old ignorance. The people determining the curriculum of our children in many states remain scientifically illiterate. And Kansas is a good case in point.

    The chairman of the school board, Dr. Steve Abrams, a veterinarian, is not merely a strict creationist. He has openly stated that he believes that God created the universe 6,500 years ago, although he was quoted in The New York Times this month as saying that his personal faith "doesn't have anything to do with science."

    ...

    A key concern should not be whether Dr. Abrams's religious views have a place in the classroom, but rather how someone whose religious views require a denial of essentially all modern scientific knowledge can be chairman of a state school board.

    Krauss points out that the origins of the earth and other "contentious" scientific problems are connected in a web of theory and results with the way the world works everyday:

    To maintain a belief in a 6,000-year-old earth requires a denial of essentially all the results of modern physics, chemistry, astronomy, biology and geology. It is to imply that airplanes and automobiles work by divine magic, rather than by empirically testable laws.

    Although Krauss refers to the problem as "illiteracy", I think it is not so simple. Sure, everyday believers in creationism have little idea of the scientific evidence for the antiquity of the world, the record of evolutionary history, or the scope of biological diversity. But making it to elected office as an evolution-skeptic requires quite another level of knowledge about science. These folks have one thing down cold -- they know that scientific "facts" are often contingent, subject to revision or overturning, and open to challenges. Many of them probably have spent time thinking about the value of the scientific method, and may frankly prefer a philosophy of certainty, with tenets not subject to overthrow. You can teach an illiterate person to read. No one can teach Steve Abrams to abandon young-earth creationism.

    What most people lack, and what these evolution-skeptics depend on, is a lack of deep understanding of the connectedness of scientific ideas. It is one thing to propose that the earth is 6000 years old. It is quite another to understand the full magnitude of physical and geological results that would have to be overturned to accept the young-earth theory. It is one thing for a scientist to say that young-earth creationism is akin to "airplanes and automobiles work[ing] by divine magic", and another to know what that even means.

    Science works because it uncovers hidden connections in nature. Evolution is one of the richest sources of those connections. This is why Dobzhansky famously wrote that "nothing in biology makes any sense except in the light of evolution." The shame is that today people are so obsessed with the idea of hidden secrets in everyday life, but don't look to the real world of science that is uncovering those secrets every day.

  • But what does the merit badge look like?

    Sun, 2006-07-16 00:31 -- John Hawks

    Man, camp has gotten a lot more boring since I was a kid:

    At the summer camp at Timber-lee Christian Center in East Troy, Wis., for example, campers can go on a seven-room "Creation Walk," where each room showcases one of the Bible's seven days of Creation. Says Karen Good, outdoor education director at Timber-lee, "The curriculum is designed to open their eyes so when they go back to school [and hear about evolution] they say, 'Oh, that sounds goofy!' "

    Other camps are fighting back by offering summer programs teaching evolution. In late June, the Unitarian Universalist Church in Fresno, Calif., sponsored the fourth season of Chalice Camp, a science camp that uses song, dance and drama to teach children about scientific discoveries about human origins.

    Well, maybe it's better than it sounds. Hey, maybe I should start offering song, dance and drama here! Woo-hoo!

  • Evolution in less than 10 words

    Fri, 2006-06-16 06:23 -- John Hawks

    Razib has a challenge: "If you had 10 words or less, what would you have the public master about evolutionary theory?"

    Here's a short credo that I give to my students:

    No evolution means equal offspring for everyone!

    It's not exactly true, of course, since a population with no variance in reproduction can still evolve, drift will still fix alleles. Heck, even if they were clones, there would still be mutations! But it does get you started thinking about how hard it would be to have a population that doesn't evolve.

    And that means that evolution is ubiquitous.

    UPDATE (6-16-2006): A reader clearly wishing he was in Zagreb e-mails:

    Try these 10:

    Evolution means change; take it or leave it (nature does!)

  • "A greater fear of boredom than of poverty"

    Mon, 2006-04-10 23:25 -- John Hawks

    The New York Times has a profile of "Flock of Dodos" filmmaker Randy Olson:

    The biologist, Randy Olson, accepts that there is no credible scientific challenge to the theory of evolution as an explanation for the diversity and complexity of life on earth. He agrees that intelligent design's embrace of a supernatural "agent" puts it outside the realm of science.

    But when he watches the advocates of intelligent design at work, he sees pleasant people who speak plainly, convincingly and with humor. When scientists he knows talk about evolution, they can be dour, pompous and disagreeable, even with one another. His film challenges them to get off their collective high horse and make their case to ordinary people with -- if they can muster it -- a smile.

    Otherwise, he suggests, they will end up in the collective cultural backwash just like the dodo.

    The story about the colleague who said "um" every seven seconds and only talked to his slides instead of the audience will be familiar to anyone who's attended a scientific meeting. Or, for that matter, college.

    The film has gotten a lot of press for its illustration of scientists who can't articulate their work or beliefs to the public.

    Though many in science bemoan their collective inability to get their messages across to the public, big grant-makers have yet to embrace Dr. Olson's approach.

    "I get hundreds of inquiries from students and graduate students wanting to do what I am doing, to get into this interface between science and the media," Dr. Olson said. "There just isn't any financial support for it. The science world does not understand media, does not support it. They don't see the need for innovation."

    Dr. Jackson said some scientists, even those interested in communicating science, "squirm" at Dr. Olson's irreverent approach. Others wonder whether his wry humor will translate to a wider audience.

    I hope it does great business -- it really seems like a worthwhile message. If you don't like the way science is marketed, then market it yourself!

  • An LDS DNA difficulty

    Thu, 2006-02-16 22:52 -- John Hawks

    The LA Times is carrying a story by writer William Lobdell about the apparent conflict between the Book of Mormon and DNA evidence for New World settlement.

    For Mormons, the lack of discernible Hebrew blood in Native Americans is no minor collision between faith and science. It burrows into the historical foundations of the Book of Mormon, a 175-year-old transcription that the church regards as literal and without error.

    For those outside the faith, the depth of the church's dilemma can be explained this way: Imagine if DNA evidence revealed that the Pilgrims didn't sail from Europe to escape religious persecution but rather were part of a migration from Iceland -- and that U.S. history books were wrong.

    The point at issue -- described at length in the article -- is the proposed history of New World populations as descendants of ancient Israelites. But some propose an alternate reading:

    The latest scholarship, they argue, shows that the text should be interpreted differently. They say the events described in the Book of Mormon were confined to a small section of Central America, and that the Hebrew tribe was small enough that its DNA was swallowed up by the existing Native Americans.

    "It would be a virtual certainly that their DNA would be swamped," said Daniel Peterson, a professor of Near Eastern studies at Brigham Young University in Provo, Utah, part of the worldwide Mormon educational system, and editor of a magazine devoted to Mormon apologetics. "And if that is the case, you couldn't tell who was a Lamanite descendant."

    The LDS church has a short response to the article, including:

    Recent attacks on the veracity of the Book of Mormon based on DNA evidence are ill considered. Nothing in the Book of Mormon precludes migration into the Americas by peoples of Asiatic origin. The scientific issues relating to DNA, however, are numerous and complex. Those interested in a more detailed analysis of those issues are referred to the resources below.

    The resources include several papers from the journal Journal of Book of Mormon Studies.

    Commentary

    I'm posting this because I think it gives an alternative picture of how genetics is affecting our interpretation of history and religion. Genetics must be consistent with human evolution -- otherwise there would be no explanation for it at all. And of course there are many stories of human origins that don't jibe with evolution or genetics.

    But to a degree that has always been true -- the fossil record clearly isn't consistent with most origins stories, independent of anything we know about genetics.

    So it's interesting to me that genetic research seems to have caused a deeper crisis than Darwinism alone ever did. Maybe this is because genetics is fundamentally more intrusive -- it deals directly in blood (figuratively if not literally), and requires the direct participation of living people. If you want to know about the origins of the Maori, you have to sample the Maori. I would also guess that a big part of the perceived importance of genetics is result-oriented -- genetics promises to find out who will get what diseases, and actually has had predictive successes. Genetic research just seems to articulate more with life than paleontology does.

    And genetics is just more detailed than fossil evidence -- traces of the ancestors of New World populations must lie in their descendants. This evidence may still leave out many details, but it fills out a much fuller picture than even hundreds of bones could do.

    It's also interesting to see the varied way that religious traditions respond. Some simply deny the relevance of science, of course. Others differentiate the subjects into categories appropriate to science (history of life) and religion (morality).

    The LDS response quoted in the article has a great deal of genealogical sophistication -- it is much like the way that anthropologists argue about the persistence or swamping of Neandertal DNA, for example. Definitely different traditions respond to scientific insights in different ways!

  • NASA, don't let the sun go down on me

    Tue, 2006-02-14 09:00 -- John Hawks

    A great commentary in the Times this morning:

    Someday the Sun Will Go Out and the World Will End (but Don't Tell Anyone)

    By Dennis Overbye

    ...

    Last week my colleague Andrew Revkin reported that a 24-year-old NASA political appointee with no scientific background, George C. Deutsch, had told a designer working on a NASA Web project that the Big Bang was "not proven fact; it is opinion," and thus the word "theory" should be used with every mention of Big Bang.

    It was not NASA's place, he said in an e-mail message, to make a declaration about the origin of the universe "that discounts intelligent design by a creator."

    In a different example of spinning science news last month, NASA headquarters removed a reference to the future death of the sun from a press release about the discovery of comet dust around a distant star known as a white dwarf. A white dwarf, a shrunken dense cinder about the size of earth, is how our own sun is fated to spend eternity, astronomers say, about five billion years from now, once it has burned its fuel.

    "We are seeing the ghost of a star that was once a lot like our sun," said Marc Kuchner of the Goddard Space Flight Center. In a statement that was edited out of the final news release he went on to say, "I cringed when I saw the data because it probably reflects the grim but very distant future of our own planets and solar system."

    An e-mail message from Erica Hupp at NASA headquarters to the authors of the original release at the Jet Propulsion Laboratory in Pasadena, Calif., said, "NASA is not in the habit of frightening the public with doom and gloom scenarios."

    Never mind that the death of the sun has been a staple of astronomy textbooks for 50 years.

    Maybe it's just me, but this series of events looks like a doom and gloom scenario...

    I'm reminded of that scene in Close Encounters of the Third Kind where the aliens pass over the row of buff-looking astronauts and take Richard Dreyfuss instead.

  • A Darwin Day parable

    Sat, 2006-02-11 09:09 -- John Hawks
    "We're going to arm you with Christian Patriot missiles," Ham, 54, recently told the 1,200 adults gathered at Calvary Temple here in northern New Jersey. It was a Friday night, the kickoff of a heavily advertised weekend conference sponsored by Ham's ministry, Answers in Genesis.

    There has been a lot of attention this week to the congregations that are observing Darwin Day, as a recognition that evolution and religion are not in conflict.

    The LA Times has an article profiling Ken Ham, who would be on the, um, other side of this issue.

    A former high-school biology teacher, Ham travels the nation training children as young as 5 to challenge science orthodoxy. He doesn't engage in the political and legal fights that have erupted over the teaching of evolution. His strategy is more subtle: He aims to give people who trust the biblical account of creation the confidence to defend their views -- aggressively.

    He urges students to offer creationist critiques of their textbooks, parents to take on science museum docents, professionals to raise the subject with colleagues. If Ham has done his job well, his acolytes will ask enough pointed questions -- and set forth enough persuasive arguments -- to shake the doctrine of Darwin.

    The article reports on one of these training sessions. Here's the part excerpted by Ann Althouse:

    Evangelist Ken Ham smiled at the 2,300 elementary students packed into pews, their faces rapt. With dinosaur puppets and silly cartoons, he was training them to reject much of geology, paleontology and evolutionary biology as a sinister tangle of lies.

    "Boys and girls," Ham said. If a teacher so much as mentions evolution, or the Big Bang, or an era when dinosaurs ruled the Earth, "you put your hand up and you say, 'Excuse me, were you there?' Can you remember that?"

    The children roared their assent.

    "Sometimes people will answer, 'No, but you weren't there either,' " Ham told them. "Then you say, 'No, I wasn't, but I know someone who was, and I have his book about the history of the world.' " He waved his Bible in the air.

    "Who's the only one who's always been there?" Ham asked.

    "God!" the boys and girls shouted.

    "Who's the only one who knows everything?"

    "God!"

    "So who should you always trust, God or the scientists?"

    The children answered with a thundering: "God!"

    I notice the annual budget of Answers in Genesis ($15 million) is almost enough to sequence the genome of another mammal species -- every one of which shows 3 billion or so marks of evolution.

    We need to get more fossils into schools.

  • Janet Monge, Darwinista

    Thu, 2006-02-09 23:00 -- John Hawks

    The AP is running an article about Darwin Day this Sunday, and Gretchen spotted it on MSNBC accompanied by a photo of Janet Monge!

    Very cool! Here's some of the article:

    PHILADELPHIA - Thanks to the "intelligent design" movement, Charles Darwin's birthday is evolving into everything from a badminton party to church sermons this weekend.

    Defenders of Darwin's theory of natural selection are planning hundreds of events around the world Sunday, the 197th anniversary of his birth, saying recent challenges to the teaching of evolution have re-emphasized the need to promote his work.

    "The people who believe in evolution ... really just sort of need to stand up and be counted," said Richard Leventhal, director of the University of Pennsylvania's Museum of Archaeology and Anthropology. "Evolution is the model that drives science. It's time to recognize that."

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.