john hawks weblog

paleoanthropology, genetics and evolution

ethics

  • AAA statement on sexual harassment in field projects

    Tue, 2013-04-16 16:21 -- John Hawks

    Following up on Saturday's post, "AAPA hears about ongoing abuse of students at field sites", the American Anthropological Association has issued a statement: "Zero tolerance for sexual harassment".

    The American Anthropological Association (AAA) is shocked and dismayed to learn about the results of a recent survey reported at the April 2013 meeting of the American Association of Physical Anthropologists in Knoxville, TN. The AAA has zero tolerance for sexual harassment in academic, professional, fieldwork or any other settings where our members work. While the AAA does not have adjudicatory authority over these matters, our Statement on Ethics: Code of Professional Responsibility sets out our clear expectation that anthropologists “…have a responsibility to maintain respectful relationships with others. In mentoring students, interacting with colleagues, working with clients, acting as a reviewer or evaluator, or supervising staff, anthropologists should comport themselves in ways that promote an equitable, supportive and sustainable workplace environment.”

    We deplore the reported incidents of sexual harassment, and expect employers and institutions of higher education to enforce the law as well as their specific anti-harassment policies for implementing the law. While sexual harassment is an issue that affects men and women alike, women bear the greatest burden of these incidents by far. The AAA has a long-term commitment to monitoring the status of women in anthropology through the Committee on the Status of Women in Anthropology, renamed in 2011 the Committee on Gender Equity in Anthropology. We encourage harassment victims who do not feel that adequate protections are available through their employer or home institution to contact the Association’s Committee on Gender Equity in Anthropology confidentially for advice.

    I appreciate how rapidly the AAA has acted to make this statement. It would be wonderful to see how pervasive these problems are in other subfields including archaeology and cultural anthropology.

    Field sites are workplaces, although many are not supervised or sponsored by American universities. Naturally students at a field site run by their university should be protected by the university's policies on harassment and other workplace crimes, yet that responsibility has not been met in many cases, where student reports have been ignored. For field sites with inadequate policies or protections, I think it is especially important for the field of anthropology to take action to promote appropriate protocols and protections.

  • AAPA hears about ongoing abuse of students at field sites

    Sat, 2013-04-13 08:22 -- John Hawks

    I'm sitting in a packed room this morning at the meetings of the American Association of Physical Anthropologists, in a session on ethics in the field. The most important presentation in the session was just delivered by Kate Clancy, who presented initial results from the Survey of Anthropological Field Experiences. She has made the written version of the presentation available on her blog, "'I had no power to say ‘that’s not okay:’ Reports of harassment and abuse in the field". It is essential reading for anyone involved in fieldwork in anthropology.

    The conclusion to the talk is a call to action.

    Too many of us, the authors of this study included, have told ourselves and others that we just need to “suck it up,” just endure one more day, to keep our heads down and power through. Survival in field-based academic science can’t just be about who can put up with or witness abuse the longest – that is not an appropriate metric to measure who is the best at their science. From here on out, let’s commit to opening up conversations about these issues, rather than avoiding or talking around them.

    Clancy is working together with Julienne Rutherford, Robin Nelson and Katie Hinde, and they have designed the survey as a systematic research investigation. Respondents' identities are anonymous, and the intent of their study is to quantify and describe what is going on now in the field, not to find and punish behavior. To me, the most important aspect of their research is the demonstration that the problems are systemic. Eighteen percent of female study respondents have been victims of physical assault or unwanted sexual contact in the field.

    Males have also participated in the survey, including participants who have reported serious abuse. The number of participants is, however, small. The survey is still seeking to add to the sample, so that they can quantify the ways that physical and psychological abuses are happening to all students in the field without compromising the anonymity of their respondents.

    It is important to note that the scope of the survey is not limited to sexual harassment, and that abusive situations have also been reported at field sites with female directors and senior staff. Hearing from more students and professionals about their field experiences will enable better reporting of all these problems, and I hope that many more people will participate in the survey.

    Personally I think this is the most important thing happening at these meetings. Read the presentation and if you know students or professional anthropologists who have done fieldwork, spread the word about the survey.

    Synopsis: 
    Kate Clancy reports on a survey of anthropological field experiences
  • Privacy, family history, and genomes

    Sat, 2013-03-30 23:52 -- John Hawks

    Razib Khan comments on the ethics of making your genome public without the consent of your family: "On genetic privacy".

    For example, if you have one of the high penetrance BRCA mutations, you may not want to expose your family’s information for pragmatic reasons. But my question would be: why do people talk about their highly heritable illnesses in public forums already? I’ve seen media profiles of women with a BRCA mutation, with female relatives. By talking about this they’re exposing their family’s genetic information implicitly. Therefore, I suspect many of the pragmatic concerns are moot, because though there is privacy in regards to health information, there isn’t a taboo about discussing one’s health status in public.

    Many people diagnosed with highly heritable disorders don't make their diagnoses public. Many talk publicly only after consulting with relatives. There may not be a taboo against discussing health information, but there is certainly no expectation that health diagnoses are public information. Many people believe that their family's health is nobody else's business and act accordingly.

    Still, this is an important point. Why do we perceive it as being more invasive to sequence a genome than to take a family medical history?

    The family history point suggests that there is no ethical standard. You do not have an expectation of privacy about your relatives' medical conditions.

  • Goodall plagiarism case

    Fri, 2013-03-29 16:39 -- John Hawks

    I'm back home now from a week on family vacation, catching up on news from the last few days. I have been dismayed to read about Jane Goodall's book debacle. She has been accused of plagiarism, fabricating meetings and interviews that did not happen, and spreading misinformation about the safety of genetically modified organisms. Michael Moynihan, who played a key role uncovering the plagiarism and fabrications of science writer Jonah Lehrer last year, has written the most in-depth account of Goodall's alleged transgressions: "Jane Goodall’s Troubling, Error-Filled New Book, ‘Seeds of Hope’"

    There is a sense in many of the reported accounts that Goodall’s co-author, Gail Hudson, is to blame. This is, of course, possible (Hudson did not respond to an email request for comment), but if Goodall had read her own manuscript—the one with her name on it—would she not have noticed the quotes from interviews with people she hadn’t spoken to? Wouldn’t a noted scientist double-check her source material? She is, after all, the person who accepted the publisher’s check and Seeds of Hope is written in the first person.

    Pat Shipman's reactions largely mirror my own: "Betrayal and Disappointment".

    Naturally the plagiarism is disturbing. But the shameful part is that poorly-researched and specious anti-GMO arguments in the book probably would not have been scrutinized without these charges of plagiarism. I see this lack of scrutiny as akin to the continuing science illiteracy of mainstream media, which I noted earlier this year: "Recantation of a former genetic know-nothing".

  • Mitochondria from another mother

    Wed, 2013-03-20 11:32 -- John Hawks

    This seems a newsworthy story by Ian Sample at the Guardian: "Britain ponders 'three-person embryos' to combat genetic diseases".

    If ministers and MPs give the procedures the green light, Britain would become the first country to offer treatments that lead to children being born with DNA from three people: their parents and a woman donor. The amount of DNA from the donor is tiny compared with the parents.

    About one in 6,000 people is born with a disease caused by genetic glitches in their mitochondria, the biological batteries that power the cells in our bodies. Mitochondria are inherited only from mothers and contain just 37 genes, held separately to the 23,000 genes that shape our appearance and define much of who we are.

    Nuclear transfer is in principle one of the easiest methods of genetic engineering. In this case, they are talking about taking a donor egg and then transferring the nuclear genetic material from the parents' fertilized egg into that donor egg. It's taking the cytoplasm from one woman (including all the mitochondria in that cell) and grafting on a whole diploid genome from a cell with two other parents. It is a cloning technique, although interestingly the Guardian article does not use the word "clone" anywhere.

    This technique would really only be useful to parents where the mother has a heritable mitochondrial disorder, so that's a small population. But it's possibly a growing population as genetic tests become more widespread, as some disease-linked mitochondrial variants go without noticeable effects in younger adults.

  • The problem of Lance retraction

    Mon, 2013-03-18 14:46 -- John Hawks

    Retraction Watch comments on a provocative case: Should a scientific paper that measured Lance Armstrong's exercise physiology during his Tour de France days now be retracted in light of revelations about his use of performance-enhancing substances? "Lance Armstrong in the scientific literature: A 'reconsideration'". The comment is prompted by an editorial in the Journal of Applied Physiology, which published the initial research [1].

    Should Coyle’s paper therefore be retracted? We do not think so; the data are the data, free of author-related ethical concerns. His editorial seems to be the best solution, especially because there can be no definitive answer. How much of the subject’s performance was attributable to his genetics and training, compared to how much was contributed by possible doping, may never be known, but that does not constitute grounds for retraction.

    Interesting just how often the paper has been cited in the years since its 2005 publication, although I'm not familiar enough with the physiology literature to judge.


    References

  • Quote: Morgan and Reynolds on ethics of plagiarism

    Fri, 2013-03-08 20:18 -- John Hawks

    Peter Morgan and Glenn Reynolds, from their book The Appearance of Impropriety: How the Ethics Wars Have Undermined American Government, Business, and Society (available online "Chapter Five: A Plague of Originality").

    In fact, appearance ethics not only fail to foster better behavior in those they govern, they also undermine the behavior of those who apply them. One of the chief appeals of appearance ethics to its enforcers (who include the corps of press and commentators) is that – much like reprinting press releases as news – judging appearances requires little knowledge of substance, allowing one to discuss the issues without the need for bothersome research or thought. Classical thinkers on ethical matters had a term for this tendency to avoid hard work. It was called laziness, and it was not considered a virtue. Another appeal of appearance ethics is that it provides something to talk about: when appearance ethics are the rule, even an unsubstantiated accusation can be said to create a bad appearance. Thus, even an unsubstantiated accusation provides grist for the mill of news flashes, op-eds, and talking-head shows.

    The classical term for this sort of behavior was malicious gossip and it, too, was not considered a virtue. This powerful appetite for accusations based on appearances itself encourages bad behavior: when the prevailing attitude is "where there’s smoke there’s fire" we should not be surprised to find a brisk trade in smudge-pots. This was known as temptation.

    That all of these human characteristics exist should come as no surprise. That they exist, by design, in an area dedicated to the improvement of ethics would have surprised classical thinkers. We should be concerned that it goes unremarked today.

    Seems apposite to recent discussions about ethics in anthropology. Self-proclaimed ethics defenders rely upon a widespread willingness to judge appearances, rather than do the hard work of engaging with evidence.

  • The cost of plagiarism at NSF

    Fri, 2013-03-08 20:04 -- John Hawks

    I pass this along from ScienceInsider, really too irritated for clever comment: "NSF Audit of Successful Proposals Finds Numerous Cases of Alleged Plagiarism".

    The National Science Foundation (NSF) is investigating nearly 100 cases of suspected plagiarism drawn from a single year's worth of proposals funded by the agency.

    The cases grow out of an internal examination by NSF's Office of Inspector General (IG) of every proposal that NSF funded in fiscal year 2011. James Kroll, head of administrative investigations within the IG's office, tells ScienceInsider that applying plagiarism software to NSF's entire portfolio of some 8000 awards made that year resulted in a "hit rate" of 1% to 1.5%. "My group is now swamped," he says about his staff of six investigators.

    So...

    Between 1 and 1.5% of the NSF budget is going to fund obvious plagiarists. Obvious because they can be caught with standard plagiarism filters, which are not richly seeded with scientific papers.

    Because closed access stands in the way of incorporating much of the scientific literature into such databases.

    And this doesn't count the incidence of grants that are given to applications proposing work that is already done.

    The NSF budget is not evenly distributed among grants, and I suppose that many small grants probably contain more plagiarism than the few really big ones. Still, we're talking about $50 million or so.

    UPDATE (2013-03-09): A reader writes:

    I was just reading your post on plagiarism, and it made me recall something that happened to me years ago when I was a practicing biochemist. My boss received a grant to review on some work proposed by one of our competitors. He passed off a copy to me to look at (I was a postdoc at the time.) On reading the background section, there was a paragraph that sounded familiar. I did a little looking around on my computer and it turned out the reason the paragraph sounded familiar was that I had written it. But not in a paper - it was in one of our grant proposals. The material didn't concern any proposed experiments - it was just part of a short review of the state of the field, so we never did anything about it. I knew the guy who did this and he was quite capable of writing a decent paragraph himself, so I never could figure out why he borrowed my material. Anyway, it may not be enough to get all the literature in the database - they should have all the other grant proposals in there too.

    This is another essential area. Probably the most common outcome is people stealing ideas from other proposals. The texts of unfunded proposals are not available to the public, which may cut down on stealing but also impedes comparing funded proposals. I tend to think that the lower the success rate, the more likely we'll see substantial cheating of one kind or another.

  • The Neandertal treatment

    Thu, 2013-03-07 10:55 -- John Hawks

    Virginia Hughes, in National Geographic News, takes on the subject of whether we will someday clone Neandertals: "Return of the Neanderthals". She gets into the technical issues a bit and discusses George Church's book Regenesis, which touched off the Neandertal cloning discussion earlier this year.

    Toward the end of the article, I get to share some of my own thinking about the utility of Neandertal biological discoveries:

    Neanderthals' climate, diet, and disease exposures were not the same as those of our ancestors, and left different adaptive marks on their genome. And yet Neanderthals are far more similar to modern humans than the animals commonly used to study disease, such as fruit flies and rodents.

    "There are issues that humans have now, where it's very plausible that Neanderthal biology might actually show us something," Hawks says. "Our knowledge of the evolutionary process could guide us toward possible treatments."

    This is a message I've been sharing with public audiences for the last year. Our knowledge about human evolution is now shaping the way we approach medicine and health in ways we never could have imagined ten years ago. It's inspiring to know that paleoanthropology has begun to really matter in human biology.

  • IRB review

    Tue, 2013-03-05 23:27 -- John Hawks

    Zachary Schrag points to a report by the American Association of University Professors , and gives a quoted excerpt that deserves to be forwarded on: "AAUP Publishes Final Report, Regulation of Research on Human Subjects: Academic Freedom and the Institutional Review Board".

    As things now stand, the IRB system assembles local committees whose members have no special competence in assessing research projects in the wide range of disciplines they are called on to assess, whose approval is required for an only minimally restricted range of research projects and who are invited to bring to bear in assessing them an only minimally restricted body of what they take to be information, who are only minimally restricted in the demands they may make on the researchers, and whose judgments about whether to permit the research to be carried out at all are, in most institutions, final. When one steps back from it, one can find oneself amazed that such an institution has developed on university campuses across the country.

    Different kinds of human research raise different kinds of ethical concerns. A good aspect of the IRB process is that the board members themselves often learn a lot about the ethical issues in other fields. But the composition of particular boards can make the process of review troublingly arbitrary.

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Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.