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paleoanthropology, genetics and evolution

Anthropology 105

  • Molars

    Tue, 2011-10-11 08:01 -- John Hawks
    Synopsis: 
    Laboratory exercise to introduce the terminology and anatomy of the molars.

    The most distal teeth are molars. Most humans have three molars, but many — especially in America — have their third molars (called wisdom teeth) extracted. Some people do not develop third molars at all, or they never erupt into occlusion. Molars have three or more cusps, and are used as grinding teeth.

    The upper molars are typically labeled with superscript numbers M1, M2, and M3, the lowers with subscript numbers M1, M2 and M3. Hence, the left lower first molar becomes LM1.

    Teeth have different directional terminology, referring specifically to the tooth row and the mouth. The direction toward the center front of the tooth row is mesial, and toward the rear of the tooth row is distal. For molars and premolars, the direction toward the cheek is buccal, and in toward the tongue is lingual.

    The two incisors, one canine, two premolars and three molars on both top and bottom are called the human dental formula. We write a dental formula as follows:

    2 1 2 3
    ___________
    2 1 2 3
  • Premolars in primates

    Tue, 2011-10-11 07:53 -- John Hawks
    Synopsis: 
    Laboratory exercise introducing the different premolar numbers in different kinds of primates.

    Different kinds of primates have different numbers of premolars in their dentitions. The ancestral number of premolars in primates is three in each quadrant of the jaw. From this ancestral number, the common ancestors of the Old World monkeys, apes and humans lost their most mesial premolars, the P2 and P2. That leaves us only two premolars where many primates have three.

    The last common ancestor of the primates had three premolars in each quadrant. Four superfamilies, including lemuroids (lemurs), lorisoids (lorises and galagos), tarsioids (tarsiers) and ceboids (New World monkeys), still have members with the ancestral three premolars. Lemurs are variable today, as some species have lost one of the premolars. Hominoids (apes and humans) and cercopithecoids (Old World monkeys) evolved from a common ancestor that had also lost its premolars. These two superfamilies belong to the group called the Catarrhini, so that we are catarrhine primates as well as hominoids.

    Additionally, the anatomy of the premolars can vary. Many catarrhines have lower P3 with a single, large cusp. Some of them have a cutting edge running from the cusp mesially (toward the front). This acts in a scissor-action against the upper canine, and is called a sectorial P3. In species with three premolars, many have a sectorial P2 instead.

    At this station, there are some primates with different kinds of premolars. Is there any way of predicting which primates have three premolars in each quadrant? What determines whether the mandible has a sectorial P3?

    The two incisors, one canine, two premolars and three molars on both top and bottom are called the human dental formula. We write a dental formula as follows:

    2 1 2 3
    ___________
    2 1 2 3

    What is the dental formula of primates who have three premolars in each quadrant?

  • Premolars

    Tue, 2011-10-11 07:37 -- John Hawks
    Synopsis: 
    Laboratory exercise to familiarize students with premolars in the dentition.

    The premolars are directly distal to (behind) the canines. Generally there are two premolars in each quadrant. Counting backward from the front of the jaw, there are normally two adult incisors, one canine, and then the two premolars, making them the fourth and fifth teeth in each row.

    In anthropology, we number these teeth differently from dentists, because the premolars in humans are homologous with the distal premolars in other mammals. So the human premolars are called the third and fourth premolars, even though we have only two of them! The lowers are numbered P3 and P4; the uppers P3 and P4.

    Premolars usually have two distinct points, or cusps, on their occlusal surface. In humans the lower third premolar is sometimes shaped very much like a canine tooth with only one cusp. In many primates, the P3 has only one large cusp that cuts against the distal edge of the upper canine, like a scissors.

    Examine the premolars at this station, both upper and lower. Learn to distinguish these from the other teeth.

    The two incisors, one canine, two premolars and three molars on both top and bottom are called the human dental formula. We write a dental formula as follows:

    2 1 2 3
    ___________
    2 1 2 3
  • Size of the external auditory meatus

    Tue, 2011-10-04 02:11 -- John Hawks

    This is a very simple lab station. The size of the opening for the ear canal, called the external auditory meatus, is larger in humans than in most other kinds of primates. Here at this station, you will find some casts that generally bear out that observation. Even the primate much larger than us, the gorilla, has smaller bony openings for the ears.

    Use the skulls at this station to examine the size of the external auditory meatus in different kinds of primates. In your comparisons, note whether humans are unusually large or small in this opening. Consider: How closely should the size of this opening be related to the body size?

    Can you think of a hypothesis to explain the size of the human external auditory meatus? How would you go about testing this hypothesis?

  • The temporal bone

    Tue, 2011-10-04 02:04 -- John Hawks
    Synopsis: 
    Introducing the anatomy of the temporal bone and its major features.

    The cranium includes all the bones of the head. Altogether, there are 26 cranial bones plus the mandible. Except for the mandible, these bones mostly are fused together so that they do not move. The joints between most of the cranial bones are borders where the bones knit together, called sutures.

    The left and right temporal bones are on the sides of the cranium. Each of them consists of several parts. The squamous portion of the bone extends upward to make up part of the cranial wall surrounding the brain. Projecting medially from the base of the temporal bone is the petrous portion. When writing out the name of the temporal bones, you should always include the side (right or left) as part of the name.

    There are several obvious features of each temporal bone. The bony opening for the ear is called the external auditory meatus. Behind the ear is a thick, bony projection called the mastoid process. A thin, slender projection under the temporal bone is called the styloid process, but this is often broken or not ossified in its connection to the bone. A projection of the temporal bone makes up the posterior half of a structure called the zygomatic arch as well.

    The temporal bone

    Each of the temporal bones normally touches, or articulates with five bones visible on the outside of the skull. Can you name them?

  • Earlobes

    Tue, 2011-10-04 02:02 -- John Hawks
    Synopsis: 
    A lab exercise illustrating the concepts of seriation and frequency, with reference to earlobe form.

    The form of the earlobes varies in humans. At one extreme, the lowest point on the earlobe is attached to the flesh of the cheek. If not, the earlobe is to varying extents "free" to dangle downward.

    Geneticists have often claimed that the earlobe form is a Mendelian trait. But more recent studies indicate that several genes are involved in the trait's variation.

    As a class, you will investigate the pattern of variation in earlobe form. The method you will use is seriation, putting individuals in a morphological order.

    Get together with your classmates and line up in order of earlobe form. It will be up to you to decide exactly how to compare each other. Your ordering of the class is called a seriation.

    Once you are in order, decide where to divide the class into attached and free earlobe forms. You can place the dividing line anywhere that makes sense to you. If you decide that no one in the class has attached earlobes, for example, that is fine.

    Your dividing line will separate the class into two categories. Delegate one student to draw a line drawing of the ear that you decided is the first of the free earlobes, closest to the dividing line. Record the number of students that you classified in both categories, attached and free.

  • Meet Ardipithecus ramidus

    Tue, 2011-10-04 01:56 -- John Hawks
    Synopsis: 
    A short introduction to <em>Ardipithecus</em>, focusing on the cranial base.
    Ardipithecus skeleton

    Ardipithecus ramidus comes from the period around 4.4 million years ago, and has so far been found at several field localities in Ethiopia. It lived shortly after the time that genetic evidence suggests humans share a common ancestor with chipmanzees and bonobos. Many scientists believe that Ardipithecus is on the human lineage, a hominin. Others disagree, suggesting it may be related to gorillas, chimpanzees, or an extinct lineage of apes.

    The most complete specimen of Ardipithecus is a skeleton from Aramis, in the Middle Awash field region of Ethiopia. The skeleton has grasping feet with opposable big toes, very long fingers and toes, and arms and legs approximately the same length. The anatomy of the skeleton is roughly like a quadruped, with arms and legs resembling monkeys in proportions rather than the living great apes. But the skeleton's pelvis suggests some changes that may reflect an ability to maintain an upright posture. The anatomy has given rise to a debate about what early hominins may have looked like.

    Another part of the anatomy that may reflect posture is the base of the cranium. A well-preserved temporal bone of Ardipithecus allows us to examine the length of its cranial base. You'll be comparing this anatomy (illustrated in the picture below) with some casts of fossil hominins, living humans and living great apes.

    Ardipithecus cranial base reconstruction. The temporal bone was mirrored using digital techniques, and the two were aligned by positioning the small semicircular canals of the inner ears (shown in the bottom frame).

    The petrous portion of the temporal bone points medially and anteriorly (toward the midline and front) on the cranial base. The hole in the base of the skull is called the foramen magnum. The foramen magnum admits the spinal cord to the brain, so its position reflects the posture of the cervical spine. A foramen magnum that is positioned toward the rear of the skull should reflect a more quadrupedal habitual posture. A position toward the front, with a short cranial base separating the foramen magnum from the palate, should reflect a more vertical habitual posture. When this part of the cranial base is long, the petrous portions of the temporal bones angle forward more strongly; a short cranial base corresponds to a more medial angle of these petrous portions.

    We may expect the cranial base to reflect posture in this way, but does it? Examine the species at this station. Can you distinguish the bipeds from the quadrupeds by using the cranial base? What about Ardipithecus: Where does it fit relative to these other species?

    Study questions: 
    1. How would you weigh evidence from different parts of the skeleton, in deciding whether Ardipithecus belongs on the human lineage?
  • Genetic variation and the Hardy-Weinberg proportions

    Mon, 2011-10-03 09:54 -- John Hawks
    Synopsis: 
    Allele frequencies and genotype frequencies are connected by math

    The fundamental information about genetics for any individual is her genotype — the alleles that she has. But genes in populations can be considered in other ways as well.

    For instance, a population consists of individuals, so a geneticist may count the number of individuals with every possible genotype. Comparing these numbers with the total number of individuals, the geneticist may calculate the genotype frequencies, the proportion of individuals who have each possible genotype.

    Cystic fibrosis (CF) is a very rare disorder. Among Americans of European ancestry, only around 1 in 2500 people will develop CF during her lifetime. The disorder is even rarer among people of non-European origin. Geneticists have surveyed many people to discover how many of them carry the disorder, and today a number of states screen newborns for cystic fibrosis as a way of directing affected children to early medical treatment (AAP Newborn Screening Task Force 2000). From this information, geneticists have determined that while only around 0.04 percent of the population is affected by cystic fibrosis, with a genotype of ff, approximately 2.5 percent of people are carriers of the allele, with a genotype of Ff. This leaves some 97.5 percent of the population with the genotype FF. These proportions are the frequencies of the three possible genotypes for this gene: 0.04% ff, 2.5% Ff and 97.5% FF.

    The frequency of an allele is the proportion of copies of that allele compared to the total number of copies of all alleles in a population.

    When geneticists know the frequencies of genotypes in a population, they can estimate how many copies of each allele are in the population as a whole. One recent study used genetic techniques to assess the genotypes of a group of colorectal cancer patients for the two possible alleles (A and B) of the p73 gene on chromosome 1 (Pfeifer et al. 2004). In this sample, 113 people (63 percent) were AA, 54 people (30 percent) were AB, and 12 people (7 percent) were BB. Each AA person has two copies of the A allele and each AB person has one copy, so the total sample included 280 copies of the A allele and 78 copies of the B allele. The allele frequency of the A allele is then 280/358, or 78 percent. The frequency of the B allele in this sample is 22 percent.

    Hardy-Weinberg proportions

    While geneticists can determine the frequency of an allele from the proportions of genotypes in a population, they may also do the same calculation in reverse — figuring out the expected proportions of genotypes from the frequencies of alleles. For example, if the cystic fibrosis f allele is found at a frequency of 5 percent in a population, then the chance that an individual will have two copies of this allele is simply the 5 percent chance for each of the two alleles, multiplied by each other. Five percent times five percent is 0.0025, which is 0.25% twenty-five chances out of 10,000.

    The Hardy-Weinberg genotype proportions are p2 + 2pq + q2 for a two-allele gene.

    The proportion of both homozygotes in the population may be determined in the same way. The probability that an individual will be a homozygote for either allele equals the frequency of the allele times itself, or squared. Thus, in the example above, the chance of f homozygotes is equal to the frequency of f squared. The proportion of heterozygotes is equal to the chance that one allele is F times the chance that the other allele is f, plus the chance that the first allele is f times the chance that the other allele is F. Since these likelihoods are the same, the total chance of an individual being a heterozygote is 2 times the frequency of one allele times the frequency of the other allele. Thus, the proportions of genotypes are p2 and q2 homozygotes, and 2pq heterozygotes.

    Geometric presentation of the Hardy-Weinberg proportions

    These proportions are called the Hardy-Weinberg proportions, after the British mathematician G. H. Hardy and German physician Wilhelm Weinberg, who independently formulated the relation in 1908. The proportions come from simple probability of sampling copies from a population with given allele frequencies. These proportions are expected to form an equilibrium. That is, they should stay the same over time, as long as the allele frequencies stay the same. When individuals mate without regard to the alleles they carry, every generation of a population should have genotype frequencies in approximately the Hardy-Weinberg proportions.

    The Hardy-Weinberg proportion is important for two reasons. First, the proportions of genotypes in a population may diverge from the expected ones for many reasons, including natural selection, division of populations into different subgroups, or mating that is not entirely random. Comparing the expected and observed proportions of genotypes allows biologists to determine whether these evolutionary forces may be contributing to a population.

    The heterozygosity of a population is the expected proportions of heterozygotes, given the allele frequencies in the population.

    Second, the proportions lead to a natural definition of genetic variation in a population: the heterozygosity. A population's heterozygosity is the expected proportion of heterozygotes from the Hardy-Weinberg formula, 2pq. Two populations may be compared by their heterozygosities: the one with the higher heterozygosity has a higher chance that any single individual will have two different alleles, which means the population is genetically more variable. Variation is a consequence of evolutionary history, including the patterns of selection and genetic drift, and the amount that individuals have moved from one population to another in the past. Thus, the Hardy-Weinberg proportions give an important way to study the evolution of populations over time.

    Study questions: 
    1. Suppose a population has two alleles, with frequencies of 70% and 30%. What are the Hardy-Weinberg proportions expected for the three genotypes of these alleles?
    2. Mendelian recessive disorders are rare in most populations, but their allele frequencies may be surprisingly high. Why?
    3. For a gene with two alleles, what is the highest possible value of heterozygosity? What is the lowest?
  • Meet Gorilla gorilla

    Tue, 2011-09-27 08:15 -- John Hawks
    Synopsis: 
    Introducing the largest living primate, the gorilla.

    The gorilla is the world's largest living primate. Gorillas are presently distributed broadly across West and Central Africa, in forested areas where human activity remains minimal. A small pocket of gorillas survives in the mountains of East Africa.

    The eastern and western gorilla geographic ranges do not touch each other today, and the two areas are home to different subspecies. The western range is the largest area, home to the western lowland gorilla, or Gorilla gorilla gorilla. In the eastern part of the gorilla range, lowland gorillas are called Gorilla gorilla graueri, and the small population of mountain gorillas is Gorilla gorilla beringei. Many biologists would term these as different gorilla species, recognizing their distinct genetic and Like the two subspecies of living orangutans, these gorilla subspecies are substantially different in genetic variation but similar in most aspects of their behavior. Both subspecies are currently threatened with extinction as their habitat disappears and they become exposed to human bush hunting.

    No fossil record of gorilla evolution from the last nine million years is presently known.

    Study the gorilla skeletons at this station and consider their anatomy. What aspects of the gorilla anatomy reflect the large size of these primates? What aspects of the anatomy would be the same even if gorillas were much smaller?

    One way to answer those questions is to compare the male and female gorilla. Compared to other apes, gorillas have the largest degree of sexual dimorphism in body size. Features that are exaggerated in the male gorilla may often be traced to their large size.

  • Primate limb proportions

    Mon, 2011-09-26 23:38 -- John Hawks
    Synopsis: 
    Comparing the forelimb and hindlimb lengths of primates with different locomotor habits.

    The lengths of the limbs of different kinds of primates adapt the animals to their habitual form of locomotion. Quadrupeds tend to have forelimbs and hindlimbs of around the same length. Adaptation to suspension or brachiation tends to involve longer forelimbs. Bipeds and leapers tend to have longer hindlimbs.

    What to do: Look at the primate skeletons at this station. Some of these primates are quadrupeds, while one is a biped and one is a knuckle-walker on the ground and moves arboreally by below-branch suspension and climbing.

    How do these limb proportions reflect the locomotor pattern of these primates? Why do you think the apes have short trunks? Why do humans have short arms?

Pages

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Neandertals

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Denisova

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Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.