john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12805 results
2011
Goldman-Neuman T, and Hovers E. 2011. Raw material selectivity in Late Pliocene Oldowan sites in the Makaamitalu Basin, Hadar, Ethiopia. Journal of Human Evolution.
Melé M, Javed A, Pybus M, Zalloua P, Haber M, Comas D, Netea MG, Balanovsky O, Balanovska E, Jin L, et al. 2011. Recombination Gives a New Insight in the Effective Population Size and the History of the Old World Human Populations. Molecular biology and evolution.
Schmitt V, and Fischer J. 2011. Representational format determines numerical competence in monkeys. Nature Communications [Internet] 2:257+. Available from: http://dx.doi.org/10.1038/ncomms1262
Pinhasi R, Higham TFG, Golovanova LV, and Doronichev VB. 2011. Revised age of late Neanderthal occupation and the end of the Middle Paleolithic in the northern Caucasus. Proceedings of the National Academy of Sciences [Internet] 108:8611–8616. Available from: http://dx.doi.org/10.1073/pnas.1018938108
Cruciani F, Trombetta B, Massaia A, Destro-Bisol G, Sellitto D, and Scozzari R. 2011. A Revised Root for the Human Y Chromosomal Phylogenetic Tree: The Origin of Patrilineal Diversity in Africa. American journal of human genetics [Internet]. Available from: http://dx.doi.org/10.1016/j.ajhg.2011.05.002
Coulson S, Staurset S, and Walker N. 2011. Ritualized Behavior in the Middle Stone Age: Evidence from Rhino Cave, Tsodilo Hills, Botswana. PaleoAnthropology 2011:18–61.
Coulson S, Staurset S, and Walker N. 2011. Ritualized Behavior in the Middle Stone Age: Evidence from Rhino Cave, Tsodilo Hills, Botswana. PaleoAnthropology [Internet] 2011:18–61. Available from: http://dx.doi.org/10.4207/PA.2011.ART42
Lawler A. 2011. Searching for Syphilis's Origins. Science 332:417 - 417.
Abi-Rached L, Jobin MJ, Kulkarni S, McWhinnie A, Dalva K, Gragert L, Babrzadeh F, Gharizadeh B, Luo M, Plummer FA, et al. 2011. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science (New York, N.Y.) 334:89-94.
Metspalu M, Romero IG, Yunusbayev B, Chaubey G, Mallick CB, Hudjashov G, Nelis M, Mägi R, Metspalu E, Remm M, et al. 2011. Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia. American journal of human genetics 89:731-44.
DeSilva JM. 2011. A shift toward birthing relatively large infants early in human evolution. Proceedings of the National Academy of Sciences [Internet] 108:1022–1027. Available from: http://dx.doi.org/10.1073/pnas.1003865108
Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admettla A, Pattini L, and Nielsen R. 2011. Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution. PLoS genetics 7:e1002355.
Armitage SJ, Jasim SA, Marks AE, Parker AG, Usik VI, and Uerpmann H-P. 2011. The Southern Route ” Out of Africa”: Evidence for an Early Expansion of Modern Humans into Arabia. Science [Internet] 331:453–456. Available from: http://dx.doi.org/10.1126/science.1199113
Gibbons A. 2011. The Species Problem. Science [Internet] 331:394. Available from: http://dx.doi.org/10.1126/science.331.6016.394
Wagner DD, Dal Cin S, Sargent JD, Kelley WM, and Heatherton TF. 2011. Spontaneous Action Representation in Smokers when Watching Movie Characters Smoke. J. Neurosci. [Internet] 31:894–898. Available from: http://dx.doi.org/10.1523/JNEUROSCI.5174-10.2011
Carretero J-M, Rodríguez L, García-González R, Arsuaga J-L, Gómez-Olivencia A, Lorenzo C, Bonmatí A, Gracia A, Martínez I, and Quam R. 2011. Stature estimation from complete long bones in the Middle Pleistocene humans from the Sima de los Huesos, Sierra de Atapuerca (Spain). Journal of human evolution.
Mounier A, Condemi S, and Manzi G. 2011. The Stem Species of Our Species: A Place for the Archaic Human Cranium from Ceprano, Italy. PLoS ONE [Internet] 6:e18821+. Available from: http://dx.doi.org/10.1371/journal.pone.0018821
Shea JJ. 2011. Stone tool analysis and human origins research: Some advice from uncle Screwtape. Evolutionary Anthropology [Internet] 20:48–53. Available from: http://dx.doi.org/10.1002/evan.20290
Currat M, and Excoffier L. 2011. Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences of the United States of America 108:15129-34.
Currat M, and Excoffier L. 2011. Strong reproductive isolation between humans and Neanderthals inferred from observed patterns of introgression. Proceedings of the National Academy of Sciences 108:15129 - 15134.
Copeland SR, Sponheimer M, de Ruiter DJ, Lee-Thorp JA, Codron D, le Roux PJ, Grimes V, and Richards MP. 2011. Strontium isotope evidence for landscape use by early hominins. Nature [Internet] 474:76–78. Available from: http://dx.doi.org/10.1038/nature10149
Britton K, Grimes V, Niven L, Steele TE, McPherron S, Soressi M, Kelly TE, Jaubert J, Hublin J-J, and Richards MP. 2011. Strontium isotope evidence for migration in late Pleistocene Rangifer: Implications for Neanderthal hunting strategies at the Middle Palaeolithic site of Jonzac, France. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2011.03.004
Fedorenko E, Nieto-Castañón A, and Kanwisher N. 2011. Syntactic processing in the human brain: What we know, what we don't know, and a suggestion for how to proceed. Brain and Language [Internet]. Available from: http://dx.doi.org/10.1016/j.bandl.2011.01.001
Papp B, Notebaart RA, and Pál C. 2011. Systems-biology approaches for predicting genomic evolution. Nature Reviews Genetics 12:591 - 602.
Mellars P, and French JC. 2011. Tenfold Population Increase in Western Europe at the Neandertal–to–Modern Human Transition. Science [Internet] 333:623–627. Available from: http://dx.doi.org/10.1126/science.1206930
Potter BA, Irish JD, Reuther JD, Gelvin-Reymiller C, and Holliday VT. 2011. A Terminal Pleistocene Child Cremation and Residential Structure from Eastern Beringia. Science [Internet] 331:1058–1062. Available from: http://dx.doi.org/10.1126/science.1201581
Durand EY, Patterson N, Reich D, and Slatkin M. 2011. Testing for ancient admixture between closely related populations. Molecular biology and evolution [Internet]. Available from: http://dx.doi.org/10.1093/molbev/msr048
Durand EY, Patterson N, Reich D, and Slatkin M. 2011. Testing for ancient admixture between closely related populations. Molecular biology and evolution 28:2239-52.
Caramelli D, Milani L, Stanyon R, and Fox CL. 2011. Towards Neanderthal Paleogenomics. In: Condemi S, Weniger G-C Continuity and Discontinuity in the Peopling of Europe. Continuity and Discontinuity in the Peopling of Europe. Dordrecht: Springer Netherlands. p 219 - 221.
George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, and Thomas JH. 2011. Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection. Genome Research.
Donath MY, and Shoelson SE. 2011. Type 2 diabetes as an inflammatory disease. Nature Reviews Immunology [Internet] 11:98–107. Available from: http://dx.doi.org/10.1038/nri2925
Couzin ID, Ioannou CC, Demirel G, Gross T, Torney CJ, Hartnett A, Conradt L, Levin SA, and Leonard NE. 2011. Uninformed individuals promote democratic consensus in animal groups. Science (New York, N.Y.) 334:1578-80.
Casanovas-Vilar I, Alba DM, Garcés M, Robles JM, and Moyà-Solà S. 2011. Updated chronology for the Miocene hominoid radiation in Western Eurasia. Proceedings of the National Academy of Sciences of the United States of America 108:5554-9.
Amos W, and Bryant C. 2011. Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes. Proceedings of the Royal Society B: Biological Sciences [Internet] 278:1587-1594. Available from: http://dx.doi.org/10.1098/rspb.2010.2056
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, et al. 2011. The variant call format and VCFtools. Bioinformatics 27:2156 - 2158.
Negash A, Brown F, and Nash B. 2011. Varieties and Sources of Artefactual Obsidian in the Middle Stone Age of the Middle Awash, Ethiopia*. Archaeometry 53:661 - 673.
Di Vincenzo F, Churchill SE, and Manzi G. 2011. The Vindija Neanderthal scapular glenoid fossa: Comparative shape analysis suggests evo-devo changes among Neanderthals. Journal of human evolution.
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Yotova V, Lefebvre J-F, Moreau C, Gbeha E, Hovhannesyan K, Bourgeois S, Bédarida S, Azevedo L, Amorim A, Sarkisian T, et al. 2011. An X-Linked Haplotype of Neandertal Origin Is Present Among All Non-African Populations. Molecular Biology and Evolution [Internet] 28:1957–1962. Available from: http://dx.doi.org/10.1093/molbev/msr024
2010
Mardis E. 2010. The \$1,000 genome, the \$100,000 analysis?. Genome Medicine [Internet] 2:84+. Available from: http://dx.doi.org/10.1186/gm205
Atzmon G, Hao L, Pe'er I, Velez C, Pearlman A, Palamara PF, Morrow B, Friedman E, Oddoux C, Burns E, et al. 2010. Abraham's Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry. [Internet] 86:850–859. Available from: http://www.cell.com/AJHG/abstract/S0002-9297(10)00246-6
Pritchard JK, and Di Rienzo A. 2010. Adaptation - not by sweeps alone. Nature reviews. Genetics [Internet] 11:665–667. Available from: http://dx.doi.org/10.1038/nrg2880
Chan YFF, Marks ME, Jones FC, Villarreal G, Shapiro MD, Brady SD, Southwick AM, Absher DM, Grimwood J, Schmutz J, et al. 2010. Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science (New York, N.Y.) [Internet] 327:302–305. Available from: http://dx.doi.org/10.1126/science.1182213
Paz-Yaacov N, Levanon EY, Nevo E, Kinar Y, Harmelin A, Jacob-Hirsch J, Amariglio N, Eisenberg E, and Rechavi G. 2010. Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates. Proceedings of the National Academy of Sciences [Internet] 107:12174–12179. Available from: http://dx.doi.org/10.1073/pnas.1006183107
Snowdon CT, and Teie D. 2010. Affective responses in tamarins elicited by species-specific music. Biol Lett 6:30-2.
Snowdon CT, and Teie D. 2010. Affective responses in tamarins elicited by species-specific music. Biology Letters [Internet] 6:30–32. Available from: http://dx.doi.org/10.1098/rsbl.2009.0593
Duval L, Fourment M, Nerrienet E, Rousset D, Sadeuh SA, Goodman SM, Andriaholinirina NV, Randrianarivelojosia M, Paul RE, Robert V, et al. 2010. African apes as reservoirs of Plasmodium falciparum and the origin and diversification of the Laverania subgenus. Proceedings of the National Academy of Sciences of the United States of America 107:10561-6.
Estrada AM, Prat EA, Sikora M, Engelken J, Soriano AR, Calafell F, and Bosch E. 2010. African signatures of recent positive selection in human FOXI1. BMC Evolutionary Biology [Internet] 10:267+. Available from: http://dx.doi.org/10.1186/1471-2148-10-267
Cyran KA, and Kimmel M. 2010. Alternatives to the Wright–Fisher model: The robustness of mitochondrial Eve dating. Theoretical Population Biology [Internet]. Available from: http://dx.doi.org/10.1016/j.tpb.2010.06.001

Pages

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.