john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 34 results
Filters: Author is Pääbo, Svante  [Clear All Filters]
2013
Fu Q, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, and Pääbo S. 2013. DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci U S A.
Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, et al. 2013. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr Biol 23:553-9.
2012
Burbano HA, Green RE, Maricic T, Lalueza-Fox C, de la Rasilla M, Rosas A, Kelso J, Pollard KS, Lachmann M, and Pääbo S. 2012. Analysis of human accelerated DNA regions using archaic hominin genomes. PloS one 7:e32877.
Fu Q, Rudan P, Pääbo S, and Krause J. 2012. Complete mitochondrial genomes reveal Neolithic expansion into Europe. PloS one 7:e32473.
Liu X, Somel M, Tang L, Yan Z, Jiang X, Guo S, Yuan Y, He L, Oleksiak A, Zhang Y, et al. 2012. Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques. Genome research 22:611-22.
Langergraber KE, Prüfer K, Rowney C, Boesch C, Crockford C, Fawcett K, Inoue E, Inoue-Muruyama M, Mitani JC, Muller MN, et al. 2012. Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proceedings of the National Academy of Sciences of the United States of America.
Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, et al. 2012. A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science 338:222-226.
Maricic T, Günther V, Georgiev O, Gehre S, Curlin M, Schreiweis C, Naumann R, Burbano HA, Meyer M, Lalueza-Fox C, et al. 2012. A Recent Evolutionary Change Affects a Regulatory Element in the Human FOXP2 Gene. Mol Biol Evol.
Sawyer S, Krause J, Guschanski K, Savolainen V, and Pääbo S. 2012. Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One 7:e34131.
2011
Fischer A, Prüfer K, Good JM, Halbwax M, Wiebe V, André C, Atencia R, Mugisha L, Ptak SE, and Pääbo S. 2011. Bonobos Fall within the Genomic Variation of Chimpanzees. PLoS ONE [Internet] 6:e21605+. Available from: http://dx.doi.org/10.1371/journal.pone.0021605
Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM-S, Ko Y-C, Jinam TA, Phipps ME, et al. 2011. Denisova admixture and the first modern human dispersals into southeast Asia and oceania. American journal of human genetics 89:516-28.
Somel M, Liu X, Tang L, Yan Z, Hu H, Guo S, Jiang X, Zhang X, Xu G, Xie G, et al. 2011. MicroRNA-Driven Developmental Remodeling in the Brain Distinguishes Humans from Other Primates. PLoS biology 9:e1001214.
2010
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, et al. 2010. A Draft Sequence of the Neandertal Genome. Science [Internet] 328:710–722. Available from: http://dx.doi.org/10.1126/science.1188021
Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, et al. 2010. Targeted investigation of the Neandertal genome by array-based sequence capture. Science (New York, N.Y.) [Internet] 328:723–725. Available from: http://dx.doi.org/10.1126/science.1188046
2009
Ptak SE, Enard W, Wiebe V, Hellmann I, Krause J, Lachmann M, and Pääbo S. 2009. Linkage Disequilibrium Extends Across Putative Selected Sites in FOXP2. Molecular Biology and Evolution [Internet] 26:2181–2184. Available from: http://dx.doi.org/10.1093/molbev/msp143
Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, and Pääbo S. 2009. The Neandertal genome and ancient DNA authenticity. The EMBO Journal 28:2494 - 2502.
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, and Pääbo S. 2009. Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources. J Vis Exp:1573.
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajković D, Kućan Ż, et al. 2009. Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes. Science [Internet] 325:318–321. Available from: http://dx.doi.org/10.1126/science.1174462
2007
Krause J, Orlando L, Serre D, Viola B, Prüfer K, Richards MP, Hublin J-J, Hänni C, Derevianko AP, and Pääbo S. 2007. Neanderthals in Central Asia and Siberia. Nature [Internet] 449:902–904. Available from: http://dx.doi.org/10.1038/nature06193
2006
Prabhakar S, Noonan JP, Pääbo S, and Rubin EM. 2006. Accelerated Evolution of Conserved Noncoding Sequences in Humans. Science [Internet] 314:786. Available from: http://dx.doi.org/10.1126/science.1130738
Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, Simons JF, Du L, Egholm M, Rothberg JM, Paunovic M, et al. 2006. Analysis of One Million Base Pairs of Neanderthal DNA. Nature [Internet] 444:330–336. Available from: http://dx.doi.org/10.1038/nature05336
Fischer A, Pollack J, Thalmann O, Nickel B, and Pääbo S. 2006. Demographic History and Genetic Differentiation in Apes. Current Biology [Internet] 16:1133–1138. Available from: http://dx.doi.org/10.1016/j.cub.2006.04.033
Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, et al. 2006. Sequencing and Analysis of Neanderthal Genomic DNA. Science [Internet] 314:1113–1118. Available from: http://dx.doi.org/10.1126/science.1131412
2005
Noonan JP, Hofreiter M, Smith D, Priest JR, Rohland N, Rabeder G, Krause J, Detter CJ, Pääbo S, and Rubin EM. 2005. Genomic Sequencing of Pleistocene Cave Bears. Science [Internet] 309:597–599. Available from: http://dx.doi.org/10.1126/science.1113485
Beauval C, Maureille B, Lacrampe-Cuyaubère F, Serre D, Peressinotto D, Bordes J-G, Cochard D, Couchoud I, Dubrasquet D, Laroulandie V, et al. 2005. A late Neandertal femur from Les Rochers-de-Villeneuve, France. Proceedings of the National Academy of Sciences of the United States of America 102:7085-90.
Beauval C, Maureille B, Lacrampe-Cuyaubère F, Serre D, Peressinotto D, Bordes J-G, Cochard D, Couchoud I, Dubrasquet D, Laroulandie V, et al. 2005. A Late Neandertal Femur from Les Rochers-de-Villeneuve, France. Proceedings of the National Academy of Sciences, U. S. A. [Internet] 104:7085–7090. Available from: http://dx.doi.org/10.1073/pnas.0502656102
Rohland N, Pollack JL, Nagel D, Beauval C, Airvaux J, Pääbo S, and Hofreiter M. 2005. The Population History of Extant and Extinct Hyenas. Molecular Biology and Evolution [Internet] 22:2435–2443. Available from: http://dx.doi.org/10.1093/molbev/msi244
Hellmann I, Prüfer K, Ji H, Zody MC, Pääbo S, and Ptak SE. 2005. Why Do Human Diversity Levels Vary at a Megabase Scale?. Genome Research [Internet] 15:1222–1231. Available from: http://dx.doi.org/10.1101/gr/3461105
2004
Serre D, Langaney A, Chech M, Teschler-Nicola M, Paunovic M, Mennecier P, Hofreiter M, Possnert G, and Pääbo S. 2004. No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biology 2:0313–0317.
2003
Kitano T, Schwarz C, Nickel B, and Pääbo S. 2003. Gene Diversity Patterns at 10 X-Chromosomal Loci in Humans and Chimpanzees. Molecular Biology and Evolution [Internet] 20:1281–1289. Available from: http://dx.doi.org/10.1093/molbev/msg134
Gilad Y, Man O, Pääbo S, and Lancet D. 2003. Human specific loss of olfactory receptor genes. Proceedings of the National Academy of Sciences of the United States of America [Internet] 100:3324–3327. Available from: http://dx.doi.org/10.1073/pnas.0535697100
Hellmann I, Ebersberger I, Ptak SE, Pääbo S, and Przeworski M. 2003. A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans. American Journal of Human Genetics [Internet] 72:1527–1535. Available from: http://dx.doi.org/10.1086/375657
Hellmann I, Zöllner S, Enard W, Ebersberger I, Nickel B, and Pääbo S. 2003. Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA. Genome Research 13:831–837.
1999
Kaessmann H, Wiebe V, and Pääbo S. 1999. Extensive nuclear DNA sequence diversity among chimpanzees. Science 286:1159–1162.

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.