john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12805 results
2009
Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo J-M, Doumbo O, et al. 2009. The Genetic Structure and History of Africans and African Americans. Science [Internet] 324:1035–1044. Available from: http://dx.doi.org/10.1126/science.1172257
Lambert CA, and Tishkoff SA. 2009. Genetic structure in African populations: implications for human demographic history. Cold Spring Harbor symposia on quantitative biology [Internet] 74:395–402. Available from: http://dx.doi.org/10.1101/sqb.2009.74.053
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, and Kim JF. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature [Internet] 461:1243–1247. Available from: http://dx.doi.org/10.1038/nature08480
Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, et al. 2009. Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Research [Internet] 19:795–803. Available from: http://dx.doi.org/10.1101/gr.088898.108
Lovejoy OC, Suwa G, Simpson SW, Matternes JH, and White TD. 2009. The Great Divides: \\emphArdipithecus ramidus Reveals the Postcrania of Our Last Common Ancestors with African Apes. Science [Internet] 326:100–106. Available from: http://dx.doi.org/10.1126/science.1175833
Miller G, Chen E, and Cole SW. 2009. Health Psychology: Developing Biologically Plausible Models Linking the Social World and Physical Health. Annual Review of Psychology [Internet] 60:501–524. Available from: http://dx.doi.org/10.1146/annurev.psych.60.110707.163551
Greenberg SA. 2009. How Citation Distortions Create Unfounded Authority: Analysis of a Citation Network. BMJ [Internet] 339. Available from: http://dx.doi.org/10.1136/bmj.b2680
Wolpoff MH. 2009. How Neandertals inform human variation. American Journal of Physical Anthropology [Internet] 139:91–102. Available from: http://dx.doi.org/10.1002/ajpa.20930
Merico D, Gfeller D, and Bader GD. 2009. How to visually interpret biological data using networks. Nat Biotech [Internet] 27:921–924. Available from: http://dx.doi.org/10.1038/nbt.1567
Pays E, and Vanhollebeke B. 2009. Human innate immunity against African trypanosomes. Current opinion in immunology [Internet] 21:493–498. Available from: http://dx.doi.org/10.1016/j.coi.2009.05.024
Darimont CT, Carlson SM, Kinnison MT, Paquet PC, Reimchen TE, and Wilmers CC. 2009. Human Predators Outpace Other Agents of Trait Change in the Wild. Proceedings of the National Academy of Sciences, U. S. A. [Internet] 106:952–954. Available from: http://dx.doi.org/10.1073/pnas.0809235106
Casals F, Ferrer-Admetlla A, Sikora M, Ramírez-Soriano A, Marquès-Bonet T, Despiau S, Roubinet F, Calafell F, Bertranpetit J, and Blancher A. 2009. Human pseudogenes of the ABO family show a complex evolutionary dynamics and loss of function. Glycobiology 19:583-91.
Konopka G, Bomar JM, Winden K, Coppola G, Jonsson ZO, Gao F, Peng S, Preuss TM, and nd Daniel. 2009. Human-Specific Transcriptional Regulation of CNS Development Genes by FOXP2. Nature [Internet] 462:213–217. Available from: http://dx.doi.org/10.1038/nature08549
Konopka G, Bomar JM, Winden K, Coppola G, Jonsson ZO, Gao F, Peng S, Preuss TM, Wohlschlegel JA, and Geschwind DH. 2009. Human-specific transcriptional regulation of CNS development genes by FOXP2. Nature [Internet] 462:213–217. Available from: http://dx.doi.org/10.1038/nature08549
Gigli E, Rasmussen M, Civit S, Rosas A, de la Rasilla M, Fortea J, Gilbert TMP, Willerslev E, and Lalueza-Fox C. 2009. An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers. Journal of Archaeological Science 36:2676 - 2679.
Kivell TL, and Schmitt D. 2009. Independent Evolution of Knuckle-Walking in African Apes Shows That Humans Did Not Evolve From a Knuckle-Walking Ancestor. Proceedings of the National Academy of Sciences, U. S. A. [Internet] early online. Available from: http://dx.doi.org/10.1073/pnas.0901280106
Kivell TL, and Schmitt D. 2009. Independent evolution of knuckle-walking in African apes shows that humans did not evolve from a knuckle-walking ancestor. Proceedings of the National Academy of Sciences of the United States of America [Internet] 106:14241–14246. Available from: http://dx.doi.org/10.1073/pnas.0901280106
Gutenkunst RN, Hernandez RD, Williamson SH, and Bustamante CD. 2009. Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data. PLoS Genet [Internet] 5:e1000695+. Available from: http://dx.doi.org/10.1371/journal.pgen.1000695
Sutter M, and Kawecki TJ. 2009. Influence of learning on range expansion and adaptation to novel habitats. Journal of Evolutionary Biology [Internet] 22:2201–2214. Available from: http://dx.doi.org/10.1111/j.1420-9101.2009.01836.x
Bird CD, and Emery NJ. 2009. Insightful Problem Solving and Creative Tool Modification By Captive Nontool-Using Rooks. Proceedings of the National Academy of Sciences, U. S. A. [Internet] 106:10370–10375. Available from: http://dx.doi.org/10.1073/pnas.0901008106
Richards MP, and Trinkaus E. 2009. Isotopic evidence for the diets of European Neanderthals and early modern humans. Proceedings of the National Academy of Sciences of the United States of America 106:16034-9.
Tofanelli S, Ferri G, Bulayeva K, Caciagli L, Onofri V, Taglioli L, Bulayev O, Boschi I, Alu M, Berti A, et al. 2009. J1-M267 Y lineage marks climate-driven pre-historical human displacements. European Journal of Human Genetics [Internet] 17:1520–1524. Available from: http://dx.doi.org/10.1038/ejhg.2009.58
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, and Holmes IH. 2009. JBrowse: A next-generation genome browser. Genome Research [Internet] 19:1630–1638. Available from: http://dx.doi.org/10.1101/gr.094607.109
Gómez-Olivencia A, Eaves-Johnson LK, Franciscus RG, Carretero JM, and Arsuaga JL. 2009. Kebara 2: New Insights Regarding the Most Complete Neandertal Thorax. Journal of Human Evolution [Internet] 57:75–90. Available from: http://dx.doi.org/10.1016/j.jhevol.2009.02.009
Dominguez MH, and Rakic P. 2009. Language Evolution: The Importance of Being Human. Nature [Internet] 462:169–170. Available from: http://dx.doi.org/10.1038/462169a
Hofer T, Ray N, Wegmann D, and Excoffier L. 2009. Large Allele Frequency Differences between Human Continental Groups are more Likely to have Occurred by Drift During range Expansions than by Selection. Annals of Human Genetics 73:95 - 108.
Clark PU, Dyke AS, Shakun JD, Carlson AE, Clark J, Wohlfarth B, Mitrovica JX, Hostetler SW, and McCabe MA. 2009. The Last Glacial Maximum. Science [Internet] 325:710–714. Available from: http://dx.doi.org/10.1126/science.1172873
{Pickford M, Coppens Y, Senut B, Morales J, and Braga J. 2009. Late Miocene Hominoid from Niger. Comptes Rendus Pal{'{e}}vol [Internet] 8:413–425. Available from: http://dx.doi.org/10.1016/j.crpv.2008.11.003
Powell A, Shennan S, and Thomas MG. 2009. Late Pleistocene demography and the appearance of modern human behavior. Science (New York, N.Y.) 324:1298-301.
Powell A, Shennan S, and Thomas MG. 2009. Late Pleistocene Demography and the Appearance of Modern Human Behavior. Science [Internet] 324:1298–1301. Available from: http://dx.doi.org/10.1126/science.1170165
Cadavid LF, and Lun C-M. 2009. Lineage-specific diversification of killer cell Ig-like receptors in the owl monkey, a New World primate. Immunogenetics 61:27-41.
Rogers AR, and Huff C. 2009. Linkage Disequilibrium Between Loci With Unknown Phase. Genetics [Internet] 182:839–844. Available from: http://dx.doi.org/10.1534/genetics.108.093153
Ptak SE, Enard W, Wiebe V, Hellmann I, Krause J, Lachmann M, and Pääbo S. 2009. Linkage Disequilibrium Extends Across Putative Selected Sites in FOXP2. Molecular Biology and Evolution [Internet] 26:2181–2184. Available from: http://dx.doi.org/10.1093/molbev/msp143
Szymczak S, Biernacka JM, Cordell HJ, González-Recio O, König IR, Zhang H, and Sun YV. 2009. Machine learning in genome-wide association studies. Genet Epidemiol 33 Suppl 1:S51-7.
White TD, Ambrose SH, Suwa G, Su DF, DeGusta D, Bernor RL, Boisserie J-R, Brunet M, Delson E, Frost S, et al. 2009. Macrovertebrate Paleontology and the Pliocene Habitat of Ardipithecus ramidus. Science [Internet] 326:87–93. Available from: http://dx.doi.org/10.1126/science.1175822
Pan THUGO. 2009. Mapping Human Genetic Diversity in Asia. Science [Internet] 326:1541–1545. Available from: http://dx.doi.org/10.1126/science.1177074
Linnen CR, and Hoekstra HE. 2009. Measuring Natural Selection on Genotypes and Phenotypes in the Wild. Cold Spring Harbor Symposia on Quantitative Biology [Internet] 74:155–168. Available from: http://dx.doi.org/10.1101/sqb.2009.74.045
Messer PW. 2009. Measuring the Rates of Spontaneous Mutation From Deep and Large-Scale Polymorphism Data. Genetics [Internet] 182:1219–1232. Available from: http://dx.doi.org/10.1534/genetics.109.105692
Lohmueller KE, Bustamante CD, and Clark AG. 2009. Methods for Human Demographic Inference Using Haplotype Patterns From Genomewide Single-Nucleotide Polymorphism Data. Genetics [Internet] 182:217–231. Available from: http://dx.doi.org/10.1534/genetics.108.099275
Blasco R, and {Fernández Peris} J. 2009. Middle Pleistocene Bird Consumption at Level XI of Bolomor Cave (Valencia, Spain). Journal of Archaeological Science [Internet] 36:2213–2223. Available from: http://dx.doi.org/10.1016/j.jas.2009.06.006
Cerný V, Fernandes V, Costa MD, Hájek M, Mulligan CJ, and Pereira L\'ısa. 2009. Migration of Chadic speaking pastoralists within Africa based on population structure of Chad Basin and phylogeography of mitochondrial L3f haplogroup. BMC evolutionary biology [Internet] 9:63+. Available from: http://dx.doi.org/10.1186/1471-2148-9-63
Gershoni M, Templeton AR, and Mishmar D. 2009. Mitochondrial bioenergetics as a major motive force of speciation. Bioessays [Internet] 31:642–650. Available from: http://dx.doi.org/10.1002/bies.200800139
Rollins B, Martin MV, Sequeira AP, Moon EA, Morgan LZ, Watson SJ, Schatzberg A, Akil H, Myers RM, Jones EG, et al. 2009. Mitochondrial variants in schizophrenia, bipolar disorder, and major depressive disorder. PloS one [Internet] 4. Available from: http://dx.doi.org/10.1371/journal.pone.0004913
Xing J, Zhang Y, Han K, Salem AHH, Sen SK, Huff CD, Zhou Q, Kirkness EF, Levy S, Batzer MA, et al. 2009. Mobile elements create structural variation: analysis of a complete human genome. Genome research [Internet] 19:1516–1526. Available from: http://dx.doi.org/10.1101/gr.091827.109
Sturm RA. 2009. Molecular genetics of human pigmentation diversity. Human Molecular Genetics 18:R9 - R17.
Sturm RA. 2009. Molecular genetics of human pigmentation diversity. Human molecular genetics [Internet] 18:R9–17. Available from: http://dx.doi.org/10.1093/hmg/ddp003
Mercader J. 2009. Mozambican Grass Seed Consumption During the Middle Stone Age. Science [Internet] 326:1680–1683. Available from: http://dx.doi.org/10.1126/science.1173966
Zhang L, Liu J, and Deng H-W. 2009. A Multilocus Linkage Disequilibrium Measure Based on Mutual Information Theory and Its Applications. Genetica [Internet] 137:355–364. Available from: http://dx.doi.org/10.1007/s10709-009-9399-2
Ingram C, Raga T, Tarekegn A, Browning S, Elamin M, Bekele E, Thomas M, Weale M, Bradman N, and Swallow D. 2009. Multiple Rare Variants as a Cause of a Common Phenotype: Several Different Lactase Persistence Associated Alleles in a Single Ethnic Group. Journal of Molecular Evolution [Internet] 69:579–588. Available from: http://dx.doi.org/10.1007/s00239-009-9301-y
Kostek MA, Angelopoulos TJ, Clarkson PM, Gordon PM, Moyna NM, Visich PS, Zoeller RF, Price TB, Seip RL, Thompson PD, et al. 2009. Myostatin and Follistatin Polymorphisms Interact with Muscle Phenotypes and Ethnicity. Medicine and Science in Sports and Exercise [Internet] 41:1063–1071. Available from: http://dx.doi.org/10.1249/MSS.0b013e3181930337

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.