john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12836 results
2009
Atkinson QD, Gray RD, and Drummond AJ. 2009. Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa. Proceedings. Biological sciences / The Royal Society [Internet] 276:367–373. Available from: http://dx.doi.org/10.1098/rspb.2008.0785
Marwick B. 2009. Biogeography of Middle Pleistocene hominins in mainland Southeast Asia: A review of current evidence. Quaternary International 202:51 - 58.
Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, et al. 2009. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics (Oxford, England) [Internet] 25:1422–1423. Available from: http://dx.doi.org/10.1093/bioinformatics/btp163
Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, and Rosas A. 2009. Bitter taste perception in Neanderthals through the analysis of the TAS2R38 gene. Biol Lett 5:809-11.
Lalueza-Fox C, Gigli E, de la Rasilla M, Fortea J, and Rosas A. 2009. Bitter taste perception in Neanderthals through the analysis of the TAS2R38 gene. Biology Letters [Internet] 5:809–811. Available from: http://dx.doi.org/10.1098/rsbl.2009.0532
DeStefano AL, Seshadri S, Beiser A, Atwood LD, Massaro JM, Au R, Wolf PA, and DeCarli C. 2009. Bivariate Heritability of Total and Regional Brain Volumes: The Framingham Study. Alzheimer Disease and Associated Disorders [Internet] 23:218–223. Available from: http://dx.doi.org/10.1097/WAD.0b013e31819cadd8
Bradley BJ, Pedersen A, and Mundy NI. 2009. Brief communication: Blue eyes in lemurs and humans: Same phenotype, different genetic mechanism. Am. J. Phys. Anthropol. [Internet] 139:269–273. Available from: http://dx.doi.org/10.1002/ajpa.21010
Lovejoy OC, Simpson SW, White TD, Asfaw B, and Suwa G. 2009. Careful Climbing in the Miocene: The Forelimbs of \\emphArdipithecus ramidus and Humans Are Primitive. Science [Internet] 326:70e1–70e7. Available from: http://dx.doi.org/10.1126/science.1175827
Jacobs Z, and Roberts RG. 2009. Catalysts for Stone Age innovations: What might have triggered two short-lived bursts of technological and behavioral innovation in southern Africa during the Middle Stone Age?. Communicative & integrative biology [Internet] 2:191–193. Available from: http://view.ncbi.nlm.nih.gov/pubmed/19513276
Glantz M, Athreya S, and Ritzman T. 2009. Is Central Asia the eastern outpost of the Neandertal range? A reassessment of the Teshik-Tash child. American Journal of Physical Anthropology 138:45 - 61.
Ono R, Soegondho S, and Yoneda M. 2009. Changing Marine Exploitation During Late Pleistocene in Northern Wallacea: Shell Remains from Leang Sarru Rockshelter in Talaud Islands. Asian Perspectives 48:318 - 341.
Henn BM, Gignoux CR, Feldman MW, and Mountain JL. 2009. Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates. Molecular Biology and Evolution [Internet] 26:217–230. Available from: http://dx.doi.org/10.1093/molbev/msn244
Mushlin RA, Gallagher S, Kershenbaum A, and Rebbeck TR. 2009. Clique-finding for heterogeneity and multidimensionality in biomarker epidemiology research: the CHAMBER algorithm. PloS one 4:e4862.
Lovejoy OC, Latimer B, Suwa G, Asfaw B, and White TD. 2009. Combining Prehension and Propulsion: The Foot of Ardipithecus ramidus. Science [Internet] 326:72e1–72e8. Available from: http://dx.doi.org/10.1126/science.1175832
Plomin R, Haworth CMA, and Davis OSP. 2009. Common disorders are quantitative traits. Nature Reviews Genetics [Internet] 10:872–878. Available from: http://dx.doi.org/10.1038/nrg2670
Liu GE, Alkan C, Jiang L, Zhao S, and Eichler EE. 2009. Comparative analysis of Alu repeats in primate genomes. Genome Research [Internet] 19:876–885. Available from: http://dx.doi.org/10.1101/gr.083972.108
Jensen-Seaman M, Wildschutte J, Soto-Calderón I, and Anthony N. 2009. A Comparative Approach Shows Differences in Patterns of Numt Insertion During Hominoid Evolution. Journal of Molecular Evolution [Internet] 68:688–699. Available from: http://dx.doi.org/10.1007/s00239-009-9243-4
Rogers CR, Mooney MP, Smith TD, Weinberg SM, Waller BM, Parr LA, Docherty BA, Bonar CJ, Reinholt LE, Deleyiannis FW-B, et al. 2009. Comparative microanatomy of the orbicularis oris muscle between chimpanzees and humans: evolutionary divergence of lip function. Journal of anatomy 214:36-44.
Cagliani R, Fumagalli M, Pozzoli U, Riva S, Cereda M, Comi GP, Pattini L, Bresolin N, and Sironi M. 2009. A complex selection signature at the human AVPR1B gene. BMC evolutionary biology 9:123.
Boesch C, Head J, and Robbins MM. 2009. Complex tool sets for honey extraction among chimpanzees in Loango National Park, Gabon. Journal of human evolution 56:560-9.
Boesch C, Head J, and Robbins MM. 2009. Complex Tool Sets for Honey Extraction Among Chimpanzees in Loango National Park, Gabon. Journal of Human Evolution [Internet] 56:560–569. Available from: http://dx.doi.org/10.1016/j.jhevol.2009.04.001
Stiner MC, Barkai R, and Gopher A. 2009. Cooperative hunting and meat sharing 400–200 kya at Qesem Cave, Israel. Proceedings of the National Academy of Sciences [Internet] 106:13207–13212. Available from: http://dx.doi.org/10.1073/pnas.0900564106
Soares P, Ermini L, Thomson N, Mormina M, Rito T, Röhl A, Salas A, Oppenheimer S, Macaulay V, and Richards MB. 2009. Correcting for purifying selection: an improved human mitochondrial molecular clock. American journal of human genetics [Internet] 84:740–759. Available from: http://dx.doi.org/10.1016/j.ajhg.2009.05.001
Hodgkinson A, Ladoukakis E, and Eyre-Walker A. 2009. Cryptic Variation in the Human Mutation Rate. PLoS Biol [Internet] 7:e1000027+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000027
Richerson PJ, Boyd R, and Bettinger RL. 2009. Cultural innovations and demographic change. Human biology 81:211-35.
Premo LS, and Hublin J-J. 2009. Culture, Population Structure, and Low Genetic Diversity in Pleistocene Hominins. Proceedings of the National Academy of Sciences, U. S. A. [Internet] 106:33–37. Available from: http://dx.doi.org/10.1073/pnas.0809194105
Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, et al. 2009. Darwinian and demographic forces affecting human protein coding genes. Genome research [Internet] 19:838–849. Available from: http://dx.doi.org/10.1101/gr.088336.108
Desmond A, and Moore J. 2009. Darwin's Sacred Cause. Boston: Houghton Mifflin Harcourt.
Wall JD, Lohmueller KE, and Plagnol V. 2009. Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations. Molecular Biology and Evolution [Internet] 26:1823–1827. Available from: http://dx.doi.org/10.1093/molbev/msp096
Bowles S. 2009. Did Warfare Among Ancestral Hunter-Gatherers Affect the Evolution of Human Social Behaviors?. Science [Internet] 324:1293–1298. Available from: http://dx.doi.org/10.1126/science.1168112
Ellegren H. 2009. The different levels of genetic diversity in sex chromosomes and autosomes. Trends in genetics : TIG 25:278-84.
Mallick S, Gnerre S, Muller P, and Reich D. 2009. The difficulty of avoiding false positives in genome scans for natural selection. Genome Research [Internet] 19:922–933. Available from: http://dx.doi.org/10.1101/gr.086512.108
Perez IS, Bernal V, Gonzalez PN, Sardi M, and Politis GG. 2009. Discrepancy between Cranial and DNA Data of Early Americans: Implications for American Peopling. PLoS ONE [Internet] 4:e5746+. Available from: http://dx.doi.org/10.1371/journal.pone.0005746
Betti L, Balloux F, Amos W, Hanihara T, and Manica A. 2009. Distance from Africa, not climate, explains within-population phenotypic diversity in humans. Proceedings of the Royal Society B: Biological Sciences [Internet] 276:809–814. Available from: http://dx.doi.org/10.1098/rspb.2008.1563
Pickford M, Senut B, Gommery D, and Musiime E. 2009. Distinctiveness of Ugandapithecus from Proconsul. Estudios Geológicos 65:183 - 241.
Zipfel B, DeSilva JM, and Kidd RS. 2009. Earliest complete hominin fifth metatarsal-Implications for the evolution of the lateral column of the foot. American Journal of Physical Anthropology 140:532 - 545.
Bennett MR, Harris JWK, Richmond BG, Braun DR, Mbua E, Kiura P, Olago D, Kibunjia M, Omuombo C, Behrensmeyer AK, et al. 2009. Early Hominin Foot Morphology Based on 1.5-Million-Year-Old Footprints from Ileret, Kenya. Science [Internet] 323:1197–1201. Available from: http://dx.doi.org/10.1126/science.1168132
Knight C. 2009. Early Human Kinship was Matrilineal. Early Human Kinship [Internet]:61–82. Available from: http://dx.doi.org/10.1002/9781444302714.ch3
Gunz P, Bookstein FL, Mitteroecker P, Stadlmayr A, Seidler H, and Weber GW. 2009. Early modern human diversity suggests subdivided population structure and a complex out-of-Africa scenario. Proceedings of the National Academy of Sciences [Internet] 106:6094–6098. Available from: http://dx.doi.org/10.1073/pnas.0808160106
Kuhn S, Stiner M, Gulec E, Ozer I, Yilmaz H, Baykara I, Acikkol A, Goldberg P, Molina K, and Unay E. 2009. The early Upper Paleolithic occupations at Üçağızlı Cave (Hatay, Turkey). Journal of Human Evolution [Internet] 56:87–113. Available from: http://dx.doi.org/10.1016/j.jhevol.2008.07.014
Hublin J-J, and Roebroeks W. 2009. Ebb and flow or regional extinctions? On the character of Neandertal occupation of northern environments. Comptes Rendus Palevol 8:503 - 509.
Foley R, and Gamble C. 2009. The ecology of social transitions in human evolution. Philosophical Transactions of the Royal Society B: Biological Sciences [Internet] 364:3267–3279. Available from: http://dx.doi.org/10.1098/rstb.2009.0136
Suwa G, Asfaw B, Kono RT, Kubo D, Lovejoy OC, and White TD. 2009. The \\emphArdipithecus ramidus Skull and Its Implications for Hominid Origins. Science [Internet] 326:68e1–68e7. Available from: http://dx.doi.org/10.1126/science.1175825
Berglund H, Järemo J, and Bengtsson G. 2009. Endemism Predicts Intrinsic Vulnerability to Nonindigenous Species on Islands. [Internet] 174. Available from: http://dx.doi.org/10.1086/598501
Snodgrass JJ, Leonard WR, and Robertson ML. 2009. The Energetics of Encephalization in Early Hominids. In: Hublin J-J, Richards MP The Evolution of Hominin Diets: Integrating Approaches to the Study of Palaeolithic Subsistence. The Evolution of Hominin Diets: Integrating Approaches to the Study of Palaeolithic Subsistence. Amsterdam: Springer. p 15–29. Available from: http://dx.doi.org/10.1007/978-1-4020-9699-0
Azevedo FAC, Carvalho LRB, Grinberg LT, Farfel JM, Ferretti REL, Leite REP, Filho WJ, Lent R, and Herculano-Houzel S. 2009. Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain. J. Comp. Neurol. [Internet] 513:532–541. Available from: http://dx.doi.org/10.1002/cne.21974
Eyre-Walker A, and Keightley PD. 2009. Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change. Molecular Biology and Evolution [Internet] 26:2097–2108. Available from: http://dx.doi.org/10.1093/molbev/msp119
McEvoy BP, Zhao ZZ, Macgregor S, Bellis C, Lea RA, Cox H, Montgomery GW, Griffiths LR, and Visscher PM. 2009. European and Polynesian admixture in the Norfolk Island population. Heredity [Internet] 105:229–234. Available from: http://dx.doi.org/10.1038/hdy.2009.175
Bustamante CD, and Ramachandran S. 2009. Evaluating Signatures of Sex-Specific Processes in the Human Genome. Nature Genetics [Internet] 41:8–10. Available from: http://dx.doi.org/10.1038/ng0109-8
Endicott P, Ho SYW, Metspalu M, and Stringer C. 2009. Evaluating the mitochondrial timescale of human evolution. Trends in Ecology & Evolution [Internet] 24:515–521. Available from: http://dx.doi.org/10.1016/j.tree.2009.04.006

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.