john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 35 results
Filters: Keyword is immune  [Clear All Filters]
2013
Raj T, Kuchroo M, Replogle JM, Raychaudhuri S, Stranger BE, and De Jager PL. 2013. Common risk alleles for inflammatory diseases are targets of recent positive selection. Am J Hum Genet 92:517-29.
Mendez FL, Watkins JC, and Hammer MF. 2013. Neandertal origin of genetic variation at the cluster of OAS immunity genes. Mol Biol Evol.
Parham P, and Moffett A. 2013. Variable NK cell receptors and their MHC class I ligands in immunity, reproduction and human evolution. Nat Rev Immunol 13:133-44.
2012
Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, and Oota H. 2012. Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation. Molecular biology and evolution.
Mendez FL, Watkins JC, and Hammer MF. 2012. Global Genetic Variation at OAS1 Provides Evidence of Archaic Admixture in Melanesian Populations. Molecular biology and evolution 29:1513-20.
Chapman SJ, and Hill AVS. 2012. Human genetic susceptibility to infectious disease. Nature Reviews Genetics.
Ferguson W, Dvora S, Fikes RW, Stone AC, and Boissinot S. 2012. Long-term balancing selection at the antiviral gene OAS1 in central African chimpanzees. Molecular biology and evolution 29:1093-103.
Lamonte G, Philip N, Reardon J, Lacsina JR, Majoros W, Chapman L, Thornburg CD, Telen MJ, Ohler U, Nicchitta CV, et al. 2012. Translocation of Sickle Cell Erythrocyte MicroRNAs into Plasmodium falciparum Inhibits Parasite Translation and Contributes to Malaria Resistance. Cell host & microbe 12:187-99.
2011
Ober C, and Yao T-C. 2011. The genetics of asthma and allergic disease: a 21st century perspective. Immunological Reviews 242:10 - 30.
Sanchez-Mazas A, Fernandez-Viña M, Middleton D, Hollenbach JA, Buhler S, Di D, Rajalingam R, Dugoujon J-M, Mack SJ, and Thorsby E. 2011. Immunogenetics as a tool in anthropological studies. Immunology [Internet] 133:143–164. Available from: http://dx.doi.org/10.1111/j.1365-2567.2011.03438.x
Erlich R, Jia X, Anderson S, Banks E, Gao X, Carrington M, Gupta N, DePristo M, Henn M, Lennon N, et al. 2011. Next-generation sequencing for HLA typing of class I loci. BMC Genomics [Internet] 12:42+. Available from: http://dx.doi.org/10.1186/1471-2164-12-42
Abi-Rached L, Jobin MJ, Kulkarni S, McWhinnie A, Dalva K, Gragert L, Babrzadeh F, Gharizadeh B, Luo M, Plummer FA, et al. 2011. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science (New York, N.Y.) 334:89-94.
Donath MY, and Shoelson SE. 2011. Type 2 diabetes as an inflammatory disease. Nature Reviews Immunology [Internet] 11:98–107. Available from: http://dx.doi.org/10.1038/nri2925
Amos W, and Bryant C. 2011. Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes. Proceedings of the Royal Society B: Biological Sciences [Internet] 278:1587-1594. Available from: http://dx.doi.org/10.1098/rspb.2010.2056
2010
Fumagalli M, Pozzoli U, Cagliani R, Comi G, Bresolin N, Clerici M, and Sironi M. 2010. The landscape of human genes involved in the immune response to parasitic worms. BMC Evolutionary Biology [Internet] 10:264+. Available from: http://dx.doi.org/10.1186/1471-2148-10-264
Albrechtsen A, Moltke I, and Nielsen R. 2010. Natural Selection and the Distribution of Identity-by-Descent in the Human Genome. Genetics [Internet] 186:295–308. Available from: http://dx.doi.org/10.1534/genetics.110.113977
Marsh SGE, Albert ED, Bodmer WF, Bontrop RE, Dupont B, Erlich HA, Fernández-Viña M, Geraghty DE, Holdsworth R, Hurley CK, et al. 2010. Nomenclature for factors of the HLA system, 2010. Tissue Antigens [Internet] 75:291–455. Available from: http://dx.doi.org/10.1111/j.1399-0039.2010.01466.x
Abel EK. 2010. The rise and fall of celiac disease in the United States. Journal of the history of medicine and allied sciences 65:81-105.
Guinan KJ, Cunningham RT, Meenagh A, Gonzalez A, Dring MM, McGuinness BW, Middleton D, and Gardiner CM. 2010. Signatures of natural selection and coevolution between killer cell immunoglobulin-like receptors (KIR) and HLA class I genes. Genes and Immunity [Internet] 11:467–478. Available from: http://dx.doi.org/10.1038/gene.2010.9
Ballingall KT, Rocchi MS, McKeever DJ, and Wright F. 2010. Trans-Species Polymorphism and Selection in the MHC Class II DRA Genes of Domestic Sheep. PLoS ONE [Internet] 5:e11402+. Available from: http://dx.doi.org/10.1371/journal.pone.0011402
2009
Zhu F, He Y, Zhang W, He J, He J, Xu X, and Yan L. 2009. Analysis of the complete genomic sequence of HLA-A alleles in the Chinese Han population. International Journal of Immunogenetics [Internet] 36:351–360. Available from: http://dx.doi.org/10.1111/j.1744-313X.2009.00874.x
Cadavid LF, and Lun C-M. 2009. Lineage-specific diversification of killer cell Ig-like receptors in the owl monkey, a New World primate. Immunogenetics 61:27-41.
2008
Ohainle M, Kerns J, Li M, Malik H, and Emerman M. 2008. Antiretroelement Activity of APOBEC3H Was Lost Twice in Recent Human Evolution. Cell Host & Microbe [Internet] 4:249–259. Available from: http://dx.doi.org/10.1016/j.chom.2008.07.005
Calafell F, Roubinet F, Ram\'ırez-Soriano A, Saitou N, Bertranpetit J, and Blancher A. 2008. Evolutionary dynamics of the human <i>ABO</i> gene. Human Genetics [Internet] 124:123–135. Available from: http://dx.doi.org/10.1007/s00439-008-0530-8
Idaghdour Y, Storey JD, Jadallah SJ, and Gibson G. 2008. A genome-wide gene expression signature of environmental geography in leukocytes of Moroccan Amazighs. PLoS Genet 4:e1000052.
Leslie S, Donnelly P, and McVean G. 2008. A statistical method for predicting classical HLA alleles from SNP data. American journal of human genetics [Internet] 82:48–56. Available from: http://dx.doi.org/10.1016/j.ajhg.2007.09.001
2007
Forrest S, and Beauchemin C. 2007. Computer immunology. Immunological Reviews [Internet] 216:176–197. Available from: http://dx.doi.org/10.1111/j.1600-065X.2007.00499.x
Cole S, Hawkley L, Arevalo J, Sung C, Rose R, and Cacioppo J. 2007. Social regulation of gene expression in human leukocytes. Genome Biology [Internet] 8:R189+. Available from: http://dx.doi.org/10.1186/gb-2007-8-9-r189
2006
Walsh EC, Sabeti P, Hutcheson HB, Fry B, Schaffner SF, Bakker PIW, Varilly P, Palma AA, Roy J, Cooper R, et al. 2006. Searching for signals of evolutionary selection in 168 genes related to immune function. Human Genetics 119:92 - 102.
Smith WP, Vu Q, Li SS, Hansen JA, Zhao LP, and Geraghty DE. 2006. Toward understanding MHC disease associations: Partial resequencing of 46 distinct HLA haplotypes. Genomics [Internet] 87:561–571. Available from: http://dx.doi.org/10.1016/j.ygeno.2005.11.020
2002
Tchilian EZ, Dawes R, Ramaley PA, Whitworth JA, Yuldasheva N, Wells SR, Watera C, French N, Gilks CF, Kunachiwa W, et al. 2002. A \\emphCD45 Polymorphism Associated with Abnormal Splicing is Absent in African Populations. Immunogenetics [Internet] 53:980–983. Available from: http://www.springerlink.com.ezproxy.library.wisc.edu/content/kjmtx7tp0058gtph/
1999
Parham P. 1999. Virtual reality in the MHC. Immunological Reviews [Internet] 167:5–15. Available from: http://dx.doi.org/10.1111/j.1600-065X.1999.tb01378.x
1995
Nieto A, Blanco Quirós A, Arranz E, Alonso Franch M, Garrote JA, and Calvo C. 1995. Study of HLA-DQA1 alleles in celiac children. Journal of investigational allergology & clinical immunology [Internet] 5:209–215. Available from: http://view.ncbi.nlm.nih.gov/pubmed/8705011
1988
Lawlor DA, Ward FE, Ennis PD, Jackson AP, and Parham P. 1988. HLA-A and B polymorphisms predate the divergence of humans and chimpanzees. Nature [Internet] 335:268–271. Available from: http://dx.doi.org/10.1038/335268a0
0
Castro-Prieto A, Wachter B, and Sommer S.0 Cheetah paradigm revisited: MHC diversity in the world's largest free-ranging population. Molecular Biology and Evolution [Internet]. Available from: http://dx.doi.org/10.1093/molbev/msq330

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.