john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 116 results
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2013
Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenborn D, Moiseyev V, Kolpakov E, et al. 2013. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genet 9:e1003296.
Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, et al. 2013. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr Biol 23:553-9.
2012
Fu W, O'Connor TD, Jun G, Kang HM, Abecasis G, Leal SM, Gabriel S, Altshuler D, Shendure J, Nickerson DA, et al. 2012. Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants. Nature.
D'Anjou RM, Bradley RS, Balascio NL, and Finkelstein DB. 2012. Climate impacts on human settlement and agricultural activities in northern Norway revealed through sediment biogeochemistry. Proc Natl Acad Sci U S A.
Fu Q, Rudan P, Pääbo S, and Krause J. 2012. Complete mitochondrial genomes reveal Neolithic expansion into Europe. PloS one 7:e32473.
Salque M, Bogucki PI, Pyzel J, Sobkowiak-Tabaka I, Grygiel R, Szmyt M, and Evershed RP. 2012. Earliest evidence for cheese making in the sixth millennium bc in northern Europe. Nature.
Farbstein R, Radić D, Brajković D, and Miracle PT. 2012. First Epigravettian Ceramic Figurines from Europe (Vela Spila, Croatia). PLoS ONE [Internet] 7:e41437. Available from: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0041437
Pinhasi R, Thomas MG, Hofreiter M, Currat M, and Burger J. 2012. The genetic history of Europeans. Trends in genetics : TIG.
Visser M, Kayser M, and Palstra R-J. 2012. HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter. Genome research.
Arnaud-Haond S, Duarte CM, Diaz-Almela E, Marbà N, Sintes T, and Serrão EA. 2012. Implications of Extreme Life Span in Clonal Organisms: Millenary Clones in Meadows of the Threatened Seagrass Posidonia oceanica. PLoS ONEPLoS ONE [Internet] 7:e30454 - . Available from: http://dx.doi.org/10.1371%2Fjournal.pone.0030454
Courtiol A, Pettay JE, Jokela M, Rotkirch A, and Lummaa V. 2012. Natural and sexual selection in a monogamous historical human population. Proceedings of the National Academy of Sciences.
Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M, et al. 2012. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nature communications 3:698.
Brace S, Palkopoulou E, Dalén L, Lister AM, Miller R, Otte M, Germonpré M, Blockley SPE, Stewart JR, and Barnes I. 2012. Serial population extinctions in a small mammal indicate Late Pleistocene ecosystem instability. Proc Natl Acad Sci U S A.
Belezal S, dos Santos AM, McEvoy B, Alves I, Martinho C, Cameron E, Shriver MD, Parra EJ, and Rocha J. 2012. The timing of pigmentation lightening in Europeans. Molecular Biology and Evolution.
Roebroeks W, Sier MJ, Nielsen TK, De Loecker D, Pares JM, Arps CES, and Mucher HJ. 2012. Use of red ochre by early Neandertals. Proceedings of the National Academy of Sciences.
2011
Chang CL, Cai JJ, Lo C, Amigo J, Park J-I, and Hsu SY. 2011. Adaptive selection of an incretin gene in Eurasian populations. Genome Research [Internet] 21:21–32. Available from: http://dx.doi.org/10.1101/gr.110593.110
Scheinfeldt LB, Biswas S, Madeoy J, Connelly CF, and Akey J. 2011. Clusters of adaptive evolution in the human genome. Frontiers in Genetics 2.
Bello SM, Parfitt SA, and Stringer CB. 2011. Earliest Directly-Dated Human Skull-Cups. PLoS ONE [Internet] 6:e17026+. Available from: http://dx.doi.org/10.1371/journal.pone.0017026
Higham T, Compton T, Stringer C, Jacobi R, Shapiro B, Trinkaus E, Chandler B, öning F, Collins C, Hillson S, et al. 2011. The earliest evidence for anatomically modern humans in northwestern Europe. Nature.
Roebroeks W, and Villa P. 2011. On the earliest evidence for habitual use of fire in Europe. Proceedings of the National Academy of Sciences [Internet] 108:5209–5214. Available from: http://dx.doi.org/10.1073/pnas.1018116108
Cortés-Sánchez M, Muñiz A, Simón-Vallejo ía D, Lozano-Francisco ía C, Vera-Peláez JL, Finlayson C, Rodríguez-Vidal J, Delgado-Huertas A, Jiménez-Espejo FJ, Martínez-Ruiz F, et al. 2011. Earliest Known Use of Marine Resources by Neanderthals. PLoS ONE 6:e24026.
Hoffecker JF. 2011. The early upper Paleolithic of eastern Europe reconsidered. Evolutionary Anthropology: Issues, News, and Reviews [Internet] 20:24–39. Available from: http://dx.doi.org/10.1002/evan.20284
Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, Garcia-Tabernero A, Garcia-Vargas S, Sánchez-Quinto F, Ramirez O, Civit S, et al. 2011. Genetic evidence for patrilocal mating behavior among Neandertal groups. Proceedings of the National Academy of Sciences [Internet]. Available from: http://dx.doi.org/10.1073/pnas.1011553108
Kooner JS, Saleheen D, Sim X, Sehmi J, Zhang W, Frossard P, Been LF, Chia K-S, Dimas AS, Hassanali N, et al. 2011. Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci. Nature genetics 43:984-9.
Roksandic M, Mihailović D, Mercier N, Dimitrijević V, Morley MW, Rakočević Z, Mihailović B, Guibert P, and Babb J. 2011. A human mandible (BH-1) from the Pleistocene deposits of Mala Balanica cave (Sićevo Gorge, Niš, Serbia). Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2011.03.003
Guba Z, Hadadi É, Major Á, Furka T, Juhász E, Koós J, Nagy K, and Zeke T. 2011. HVS-I polymorphism screening of ancient human mitochondrial DNA provides evidence for N9a discontinuity and East Asian haplogroups in the Neolithic Hungary. Journal of Human Genetics.
Flas D. 2011. The Middle to Upper Paleolithic transition in Northern Europe: the Lincombian-Ranisian-Jerzmanowician and the issue of acculturation of the last Neanderthals. World Archaeology 43:605 - 627.
Martinón-Torres M, Bermúdez de Castro JM, Gómez-Robles A, Prado-Simón L, and Arsuaga JL. 2011. Morphological description and comparison of the dental remains from Atapuerca-Sima de los Huesos site (Spain). Journal of Human Evolution.
Fabre V, Condemi S, Degioanni A, and Herrscher E. 2011. Neanderthals versus Modern Humans: Evidence for Resource Competition from Isotopic Modelling. International journal of evolutionary biology 2011:689315.
Deguilloux M-F, Soler L, Pemonge M-H, Scarre C, Joussaume R, and Laporte L. 2011. News from the west: Ancient DNA from a French megalithic burial chamber. Am. J. Phys. Anthropol. [Internet] 144:108–118. Available from: http://dx.doi.org/10.1002/ajpa.21376
Prat S, Péan SC, Crépin L, Drucker DG, Puaud SJ, Valladas H, Lázničková-Galetová M, van der Plicht J, and Yanevich A. 2011. The Oldest Anatomically Modern Humans from Far Southeast Europe: Direct Dating, Culture and Behavior. PLoS ONE [Internet] 6:e20834+. Available from: http://dx.doi.org/10.1371/journal.pone.0020834
Busby GBJ, Brisighelli F, Sanchez-Diz P, Ramos-Luis E, Martinez-Cadenas C, Thomas MG, Bradley DG, Gusmao L, Winney B, Bodmer W, et al. 2011. The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269. Proceedings of the Royal Society B: Biological Sciences.
Pinhasi R, Higham TFG, Golovanova LV, and Doronichev VB. 2011. Revised age of late Neanderthal occupation and the end of the Middle Paleolithic in the northern Caucasus. Proceedings of the National Academy of Sciences [Internet] 108:8611–8616. Available from: http://dx.doi.org/10.1073/pnas.1018938108
Mounier A, Condemi S, and Manzi G. 2011. The Stem Species of Our Species: A Place for the Archaic Human Cranium from Ceprano, Italy. PLoS ONE [Internet] 6:e18821+. Available from: http://dx.doi.org/10.1371/journal.pone.0018821
Britton K, Grimes V, Niven L, Steele TE, McPherron S, Soressi M, Kelly TE, Jaubert J, Hublin J-J, and Richards MP. 2011. Strontium isotope evidence for migration in late Pleistocene Rangifer: Implications for Neanderthal hunting strategies at the Middle Palaeolithic site of Jonzac, France. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2011.03.004
Mellars P, and French JC. 2011. Tenfold Population Increase in Western Europe at the Neandertal–to–Modern Human Transition. Science [Internet] 333:623–627. Available from: http://dx.doi.org/10.1126/science.1206930
Casanovas-Vilar I, Alba DM, Garcés M, Robles JM, and Moyà-Solà S. 2011. Updated chronology for the Miocene hominoid radiation in Western Eurasia. Proceedings of the National Academy of Sciences of the United States of America 108:5554-9.
2010
Atzmon G, Hao L, Pe'er I, Velez C, Pearlman A, Palamara PF, Morrow B, Friedman E, Oddoux C, Burns E, et al. 2010. Abraham's Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry. [Internet] 86:850–859. Available from: http://www.cell.com/AJHG/abstract/S0002-9297(10)00246-6
Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, Adler CJ, Der Sarkissian CSI, Brandt G, Schwarz C, Nicklisch N, et al. 2010. Ancient DNA from European Early Neolithic Farmers Reveals Their Near Eastern Affinities. PLoS Biol [Internet] 8:e1000536+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000536
Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt H-J, Torroni A, and Richards MB. 2010. The Archaeogenetics of Europe. [Internet] 20:R174–R183. Available from: http://www.cell.com/current-biology/abstract/S0960-9822(09)02069-7
Clottes J. 2010. Cave Art. Reprint. Phaidon Press. Available from: http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20&path=ASIN/0714857238
Carbonell E, Cáceres I, Lozano M, Saladié P, Rosell J, Lorenzo C, Vallverdú J, Huguet R, Canals A, and Bermúdez de Castro JM. 2010. Cultural Cannibalism as a Paleoeconomic System in the European Lower Pleistocene. Current Anthropology [Internet] 51:539–549. Available from: http://dx.doi.org/10.1086/653807
Yravedra J, Dom\'ınguez-Rodrigo M, Santonja M, Pérez-González A, Panera J, Rubio-Jara S, and Baquedano E. 2010. Cut marks on the Middle Pleistocene elephant carcass of Áridos 2 (Madrid, Spain). Journal of Archaeological Science [Internet] 37:2469–2476. Available from: http://dx.doi.org/10.1016/j.jas.2010.05.007
Liu F, Wollstein A, Hysi PG, Ankra-Badu GA, Spector TD, Park D, Zhu G, Larsson M, Duffy DL, Montgomery GW, et al. 2010. Digital Quantification of Human Eye Color Highlights Genetic Association of Three New Loci. PLoS Genet [Internet] 6:e1000934+. Available from: http://dx.doi.org/10.1371/journal.pgen.1000934
Haidle MN, and Pawlik AF. 2010. The earliest settlement of Germany: Is there anything out there?. Quaternary International [Internet]. Available from: http://dx.doi.org/10.1016/j.quaint.2010.02.009
Parfitt SA, Ashton NM, Lewis SG, Abel RL, Coope RG, Field MH, Gale R, Hoare PG, Larkin NR, Lewis MD, et al. 2010. Early Pleistocene human occupation at the edge of the boreal zone in northwest Europe. Nature [Internet] 466:229–233. Available from: http://dx.doi.org/10.1038/nature09117
Harvati K, Hublin J-J, and Gunz P. 2010. Evolution of middle-late Pleistocene human cranio-facial form: A 3-D approach. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2010.06.005
Sezgin E, Drosdak A, McIntosh C, Kessing B, Lautenberger JA, Goedert JJ, Phair JP, Troyer JL, Smith MW, and O'Brien SJ. 2010. Examination of disease-based selection, demographic history and population structure in European Y-chromosome haplogroup I. Journal of Human Genetics [Internet] 55:613–620. Available from: http://dx.doi.org/10.1038/jhg.2010.77
O'Dushlaine C, McQuillan R, Weale ME, Crouch DJM, Johansson A, Aulchenko Y, Franklin CS, Polasek O, Fuchsberger C, Corvin A, et al. 2010. Genes predict village of origin in rural Europe. European Journal of Human Genetics [Internet] 18:1269–1270. Available from: http://dx.doi.org/10.1038/ejhg.2010.92
Melchior L, Lynnerup N, Siegismund HR, Kivisild T, and Dissing J. 2010. Genetic Diversity among Ancient Nordic Populations. PLoS ONE [Internet] 5:e11898+. Available from: http://dx.doi.org/10.1371/journal.pone.0011898

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.