john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 20 results
Filters: Keyword is effective population size  [Clear All Filters]
2013
Gattepaille LM, Jakobsson M, and Blum GBM. 2013. Inferring population size changes with sequence and SNP data: lessons from human bottlenecks. Heredity 110:409 - 419.
2011
Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Kidd JM, Rodr\'ıguez-Botigué L, Ramachandran S, Hon L, Brisbin A, et al. 2011. Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proceedings of the National Academy of Sciences [Internet] 108:5154–5162. Available from: http://dx.doi.org/10.1073/pnas.1017511108
Li H, and Durbin R. 2011. Inference of human population history from individual whole-genome sequences. Nature [Internet] 475:493–496. Available from: http://dx.doi.org/10.1038/nature10231
Mellars P, and French JC. 2011. Tenfold Population Increase in Western Europe at the Neandertal–to–Modern Human Transition. Science [Internet] 333:623–627. Available from: http://dx.doi.org/10.1126/science.1206930
2010
Huff CD, Xing J, Rogers AR, Witherspoon D, and Jorde LB. 2010. Mobile elements reveal small population size in the ancient ancestors of Homo sapiens. Proceedings of the National Academy of Sciences [Internet] 107:2147–2152. Available from: http://dx.doi.org/10.1073/pnas.0909000107
2009
Seger J, Smith WA, Perry JJ, Hunn J, Kaliszewska ZA, La Sala L, Pozzi L, Rowntree VJ, and Adler FR. 2009. Gene Genealogies Strongly Distorted by Weakly Interfering Mutations in Constant Environments. Genetics [Internet] 184:genetics.109.103556–545. Available from: http://dx.doi.org/10.1534/genetics.109.103556
Messer PW. 2009. Measuring the Rates of Spontaneous Mutation From Deep and Large-Scale Polymorphism Data. Genetics [Internet] 182:1219–1232. Available from: http://dx.doi.org/10.1534/genetics.109.105692
Chiaroni J, Underhill PA, and Cavalli-Sforza LL. 2009. Y chromosome diversity, human expansion, drift, and cultural evolution. Proceedings of the National Academy of Sciences [Internet] 106:20174–20179. Available from: http://dx.doi.org/10.1073/pnas.0910803106
2008
Hawks J. 2008. From Genes to Numbers: Effective Population Sizes in Human Evolution. In: Bocquet-Appel J-P Recent Advances in Paleodemography. Recent Advances in Paleodemography. Dordrecht: Springer Netherlands. p 9 - 30.
2007
Hobolth A, Christensen OF, Mailund T, and Schierup MH. 2007. Genomic Relationships and Speciation Times of Human, Chimpanzee, and Gorilla Inferred from a Coalescent Hidden Markov Model. PLoS Genet [Internet] 3:e7+. Available from: http://dx.doi.org/10.1371/journal.pgen.0030007
2003
Marth G, Schuler G, Yeh R, Davenport R, Agarwala R, Church D, Wheelan S, Baker J, Ward M, Kholodov M, et al. 2003. Sequence Variations in the Public Human Genome Data Reflect a Bottlenecked Population History. Proceedings of the National Academy of Sciences, U. S. A. [Internet] 100:376–381. Available from: http://dx.doi.org/10.1073/pnas.222673099
2000
Hawks J, Hunley K, Lee SH, and Wolpoff MH. 2000. Bottlenecks and Pleistocene human evolution. Molecular Biology and Evolution 17:2–22.
1998
Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, and Sherry ST. 1998. Genetic traces of ancient demography. Proceedings of the National Academy of Sciences, U. S. A. 95:1961–1967.
1993
Harpending HC, Sherry ST, Rogers AR, and Stoneking M. 1993. The genetic structure of ancient human populations. Current Anthropology 34:483–496.
1991
Vigilant L, Stoneking M, Harpending HC, Hawkes K, and Wilson AC. 1991. African populations and the evolution of human mitochondrial DNA. Science 253:1503–1507.
1987
Cann RL, Stoneking M, and Wilson AC. 1987. Mitochondrial DNA and human evolution. Nature 325:31–36.
1985
Cooper DN, Smith BA, Cooke HJ, Niemann S, and Schmidtke J. 1985. An estimate of unique DNA sequence heterozygosity in the human genome. Human Genetics [Internet] 69:201–205. Available from: http://dx.doi.org/10.1007/BF00293024
1984
Nei M, and Graur D. 1984. Extent of protein polymorphism and the neutral mutation theory. Evolutionary Biology 17:73–118.
1980
Brown WM. 1980. Polymorphism in mitochondrial DNA of humans as revealed by restriction endonuclease analysis. Proceedings of the National Academy of Sciences, U. S. A. 77:3605–3609.
1972
Haigh J, and Maynard Smith J. 1972. Population size and protein variation in man. Genetical Research [Internet] 19:73–89. Available from: http://dx.doi.org/10.1017/S0016672300014282

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.