john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 72 results
Filters: Keyword is primates  [Clear All Filters]
2013
Bergman TJ. 2013. Speech-like vocalized lip-smacking in geladas. Current Biology 23:R268 - R269.
2012
Hardus ME, Lameira AR, Zulfa A, Atmoko SUS, Vries H, and Wich SA. 2012. Behavioral, Ecological, and Evolutionary Aspects of Meat-Eating by Sumatran Orangutans (Pongo abelii). International Journal of Primatology.
Perry GH, Melsted P, Marioni JC, Wang Y, Bainer R, Pickrell JK, Michelini K, Zehr S, Yoder AD, Stephens M, et al. 2012. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. Genome research 22:602-10.
Steiper ME, and Seiffert ER. 2012. Evidence for a convergent slowdown in primate molecular rates and its implications for the timing of early primate evolution. Proceedings of the National Academy of Sciences of the United States of America 109:6006-11.
Stanyon R, Rocchi M, Bigoni F, and Archidiacono N. 2012. Evolutionary Molecular Cytogenetics of Catarrhine Primates: Past, Present and Future. Cytogenetic and genome research.
Liu X, Somel M, Tang L, Yan Z, Jiang X, Guo S, Yuan Y, He L, Oleksiak A, Zhang Y, et al. 2012. Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques. Genome research 22:611-22.
de Boer B. 2012. Loss of air sacs improved hominin speech abilities. Journal of human evolution 62:1-6.
Daniels BC, Krakauer DC, and Flack JC. 2012. Sparse code of conflict in a primate society. Proceedings of the National Academy of Sciences of the United States of America.
2011
Montgomery SH, Capellini I, Venditti C, Barton RA, and Mundy NI. 2011. Adaptive Evolution of Four Microcephaly Genes and the Evolution of Brain Size in Anthropoid Primates. Molecular Biology and Evolution [Internet] 28:625–638. Available from: http://dx.doi.org/10.1093/molbev/msq237
Bronikowski AM, Altmann J, Brockman DK, Cords M, Fedigan LM, Pusey A, Stoinski T, Morris WF, Strier KB, and Alberts SC. 2011. Aging in the Natural World: Comparative Data Reveal Similar Mortality Patterns Across Primates. Science [Internet] 331:1325–1328. Available from: http://dx.doi.org/10.1126/science.1201571
Wilkinson RD, Steiper ME, Soligo C, Martin RD, Yang Z, and Tavaré S. 2011. Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data. Systematic Biology [Internet] 60:16–31. Available from: http://dx.doi.org/10.1093/sysbio/syq054
Perelman P, Johnson WE, Roos C, Seuánez HN, Horvath JE, Moreira MAM, Kessing B, Pontius J, Roelke M, Rumpler Y, et al. 2011. A molecular phylogeny of living primates. PLoS Genet 7:e1001342.
Schmitt V, and Fischer J. 2011. Representational format determines numerical competence in monkeys. Nature Communications [Internet] 2:257+. Available from: http://dx.doi.org/10.1038/ncomms1262
2010
Snowdon CT, and Teie D. 2010. Affective responses in tamarins elicited by species-specific music. Biol Lett 6:30-2.
Snowdon CT, and Teie D. 2010. Affective responses in tamarins elicited by species-specific music. Biology Letters [Internet] 6:30–32. Available from: http://dx.doi.org/10.1098/rsbl.2009.0593
Herculano-Houzel S, Mota B, Wong P, and Kaas JH. 2010. Connectivity-driven white matter scaling and folding in primate cerebral cortex. Proceedings of the National Academy of Sciences [Internet] 107:19008–19013. Available from: http://dx.doi.org/10.1073/pnas.1012590107
Kim HL, Igawa T, Kawashima A, Satta Y, and Takahata N. 2010. Divergence, demography and gene loss along the human lineage. Philosophical Transactions of the Royal Society B: Biological Sciences [Internet] 365:2451–2457. Available from: http://dx.doi.org/10.1098/rstb.2010.0004
Semple S, Hsu MJ, and Agoramoorthy G. 2010. Efficiency of coding in macaque vocal communication. Biology Letters [Internet] 6:469–471. Available from: http://dx.doi.org/10.1098/rsbl.2009.1062
Ochman H, Worobey M, Kuo C-H, Ndjango J-BN, Peeters M, Hahn BH, and Hugenholtz P. 2010. Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities. PLoS Biol [Internet] 8:e1000546+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000546
Hiwatashi T, Okabe Y, Tsutsui T, and Hiramatsu C. 2010. An Explicit Signature of Balancing Selection for Color-Vision Variation in New World Monkeys. Molecular Biology and Evolution 27:453 - 464.
Worobey M, Telfer P, Souquiere S, Hunter M, Coleman CA, Metzger MJ, Reed P, Makuwa M, Hearn G, Honarvar S, et al. 2010. Island Biogeography Reveals the Deep History of SIV. Science [Internet] 329:1487+. Available from: http://dx.doi.org/10.1126/science.1193550
Meader S, Ponting CP, and Lunter G. 2010. Massive turnover of functional sequence in human and other mammalian genomes. Genome research [Internet] 20:1335–1343. Available from: http://dx.doi.org/10.1101/gr.108795.110
Russon A, and Andrews K. 2010. Orangutan pantomime: elaborating the message. Biology Letters [Internet]. Available from: http://dx.doi.org/10.1098/rsbl.2010.0564
Balter M. 2010. Probing Culture's Secrets, From Capuchins to Children. Science [Internet] 329:266–267. Available from: http://dx.doi.org/10.1126/science.329.5989.266
2009
Smith EE, and Malik HS. 2009. The apolipoprotein L family of programmed cell death and immunity genes rapidly evolved in primates at discrete sites of host–pathogen interactions. Genome Research [Internet] 19:850–858. Available from: http://dx.doi.org/10.1101/gr.085647.108
Bradley BJ, Pedersen A, and Mundy NI. 2009. Brief communication: Blue eyes in lemurs and humans: Same phenotype, different genetic mechanism. Am. J. Phys. Anthropol. [Internet] 139:269–273. Available from: http://dx.doi.org/10.1002/ajpa.21010
Liu GE, Alkan C, Jiang L, Zhao S, and Eichler EE. 2009. Comparative analysis of Alu repeats in primate genomes. Genome Research [Internet] 19:876–885. Available from: http://dx.doi.org/10.1101/gr.083972.108
Azevedo FAC, Carvalho LRB, Grinberg LT, Farfel JM, Ferretti REL, Leite REP, Filho WJ, Lent R, and Herculano-Houzel S. 2009. Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain. J. Comp. Neurol. [Internet] 513:532–541. Available from: http://dx.doi.org/10.1002/cne.21974
Tung J, Primus A, Bouley AJ, Severson TF, Alberts SC, and Wray GA. 2009. Evolution of a malaria resistance gene in wild primates. Nature [Internet] 460:388–391. Available from: http://dx.doi.org/10.1038/nature08149
Casals F, Ferrer-Admetlla A, Sikora M, Ramírez-Soriano A, Marquès-Bonet T, Despiau S, Roubinet F, Calafell F, Bertranpetit J, and Blancher A. 2009. Human pseudogenes of the ABO family show a complex evolutionary dynamics and loss of function. Glycobiology 19:583-91.
Watson KK, Ghodasra JH, and Platt ML. 2009. Serotonin Transporter Genotype Modulates Social Reward and Punishment in Rhesus Macaques. PLoS ONE [Internet] 4:e4156+. Available from: http://dx.doi.org/10.1371/journal.pone.0004156
2008
Desilva J, and Lesnik J. 2008. Brain size at birth throughout human evolution: A new method for estimating neonatal brain size in hominins. Journal of Human Evolution [Internet] 55:1064–1074. Available from: http://dx.doi.org/10.1016/j.jhevol.2008.07.008
Kelley JL, and Swanson WJ. 2008. Dietary change and adaptive evolution of enamelin in humans and among primates. Genetics 178:1595-603.
Arbib MA, Liebal K, and Pika S. 2008. Primate Vocalization, Gesture, and the Evolution of Human Language. Current Anthropology [Internet] 49:1053–1076. Available from: http://dx.doi.org/10.1086/593015
Steiper ME, and Young NM. 2008. Timing primate evolution: Lessons from the discordance between molecular and paleontological estimates. Evol. Anthropol. [Internet] 17:179–188. Available from: http://dx.doi.org/10.1002/evan.20177
2007
Herculano-Houzel S, Collins CE, Wong P, and Kaas JH. 2007. Cellular scaling rules for primate brains. Proceedings of the National Academy of Sciences [Internet] 104:3562–3567. Available from: http://dx.doi.org/10.1073/pnas.0611396104
Haitina T, Ringholm A, Kelly J, Mundy NI, and SchiÃ{\P}th HB. 2007. High Diversity in Functional Properties of Melanocortin 1 Receptor (MC1R) in Divergent Primate Species Is More Strongly Associated with Phylogeny than Coat Color. Molecular Biology and Evolution [Internet] 24:2001–2008. Available from: http://dx.doi.org/10.1093/molbev/msm134
Fernandez A A, and Morris  MR. 2007. Sexual Selection and Trichromatic Color Vision in Primates: Statistical Support for the Preexisting‐Bias Hypothesis. The American Naturalist 170:10 - 20.
Perry GH, Martin RD, and Verrelli BC. 2007. Signatures of functional constraint at aye-aye opsin genes: the potential of adaptive color vision in a nocturnal primate. Molecular biology and evolution 24:1963-70.
2006
Schoenemann TP. 2006. Evolution of the Size and Functional Areas of the Human Brain. Annual Review of Anthropology [Internet] 35:379–406. Available from: http://dx.doi.org/10.1146/annurev.anthro.35.081705.123210
Kim S-H, Elango N, Warden C, Vigoda E, and Yi SV. 2006. Heterogeneous Genomic Molecular Clocks in Primates. PLoS Genet [Internet] 2:e163+. Available from: http://dx.doi.org/10.1371/journal.pgen.0020163
Beard C. 2006. The Hunt for the Dawn Monkey: Unearthing the Origins of Monkeys, Apes, and Humans. 1st ed. University of California Press. Available from: http://www.amazon.com/exec/obidos/redirect?tag=citeulike07-20&path=ASIN/0520249860
Steiper ME, and Young NM. 2006. Primate molecular divergence dates. Molecular Phylogenetics and Evolution [Internet] 41:384–394. Available from: http://dx.doi.org/10.1016/j.ympev.2006.05.021
Ray DA, Xing J, Salem A-H, and Batzer MA. 2006. SINEs of a Nearly Perfect Character. Systematic Biology [Internet] 55:928–935. Available from: http://dx.doi.org/10.1080/10635150600865419
2005
Roth G, and Dicke U. 2005. Evolution of the brain and intelligence. Trends in Cognitive Sciences [Internet] 9:250–257. Available from: http://dx.doi.org/10.1016/j.tics.2005.03.005
Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart C-B, Disotell TR, Ryder OA, and Batzer MA. 2005. A mobile element based phylogeny of Old World monkeys. Molecular Phylogenetics and Evolution [Internet] 37:872–880. Available from: http://dx.doi.org/10.1016/j.ympev.2005.04.015
Ottoni EB, de Resende BD, and Izar P. 2005. Watching the best nutcrackers: what capuchin monkeys (Cebus apella) know about others' tool-using skills. Animal cognition 8:215-9.
2004
Kawamura S, and Kubotera N. 2004. Ancestral loss of short wave-sensitive cone visual pigment in lorisiform prosimians, contrasting with its strict conservation in other prosimians. Journal of molecular evolution 58:314-21.
Steiper ME, Young NM, and Sukarna TY. 2004. Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid–cercopithecoid divergence. Proceedings of the National Academy of Sciences of the United States of America [Internet] 101:17021–17026. Available from: http://dx.doi.org/10.1073/pnas.0407270101
Rae TC, and Koppe T. 2004. Holes in the head: Evolutionary interpretations of the paranasal sinuses in catarrhines. Evolutionary Anthropology: Issues, News, and Reviews 13:211 - 223.

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.