john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 56 results
Filters: Keyword is migration  [Clear All Filters]
2013
Haber M, Gauguier D, Youhanna S, Patterson N, Moorjani P, Botigué LR, Platt DE, Matisoo-Smith E, Soria-Hernanz DF, Wells SR, et al. 2013. Genome-Wide Diversity in the Levant Reveals Recent Structuring by Culture. PLoS Genetics 9:e1003316.
2012
Behar  M, van Oven M, Rosset S, Metspalu M, Loogväli E-L, Silva  M, Kivisild T, Torroni A, and Villems R. 2012. A “Copernican” Reassessment of the Human Mitochondrial DNA Tree from its Root. The American Journal of Human Genetics 90:675 - 684.
Lukic S, and Hey J. 2012. Demographic Inference Using Spectral Methods on SNP Data, With an Analysis of the Human out-of-Africa Expansion. Genetics.
Pinhasi R, Thomas MG, Hofreiter M, Currat M, and Burger J. 2012. The genetic history of Europeans. Trends in genetics : TIG.
Rasteiro R, Bouttier P-A, Sousa VC, and Chikhi L. 2012. Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework. Proceedings. Biological sciences / The Royal Society.
Eriksson A, Betti L, Friend AD, Lycett SJ, Singarayer JS, von Cramon-Taubadel N, Valdes PJ, Balloux F, and Manica A. 2012. Late Pleistocene climate change and the global expansion of anatomically modern humans. Proc Natl Acad Sci U S A.
Suo C, Xu H, Khor C-C, Ong RT, Sim X, Chen J, Tay W-T, Sim K-S, Zeng Y-X, Zhang X, et al. 2012. Natural positive selection and north-south genetic diversity in East Asia. European journal of human genetics : EJHG 20:102-10.
2011
von Cramon-Taubadel N, and Pinhasi R. 2011. Craniometric data support a mosaic model of demic and cultural Neolithic diffusion to outlying regions of Europe. Proceedings of the Royal Society B: Biological Sciences [Internet]. Available from: http://dx.doi.org/10.1098/rspb.2010.2678
Moreau C, Bherer C, Vezina H, Jomphe M, Labuda D, and Excoffier L. 2011. Deep Human Genealogies Reveal a Selective Advantage to Be on an Expanding Wave Front. Science.
Ebenesersdóttir S\'ıðurS, Sigurðsson Á, Sánchez-Quinto F, Lalueza-Fox C, Stefánsson K, and Helgason A. 2011. A new subclade of mtDNA haplogroup C1 found in icelanders: Evidence of pre-columbian contact?. Am. J. Phys. Anthropol. [Internet] 144:92–99. Available from: http://dx.doi.org/10.1002/ajpa.21419
Atkinson QD. 2011. Phonemic Diversity Supports a Serial Founder Effect Model of Language Expansion from Africa. Science [Internet] 332:346–349. Available from: http://dx.doi.org/10.1126/science.1199295
Melé M, Javed A, Pybus M, Zalloua P, Haber M, Comas D, Netea MG, Balanovsky O, Balanovska E, Jin L, et al. 2011. Recombination Gives a New Insight in the Effective Population Size and the History of the Old World Human Populations. Molecular biology and evolution.
Balter M. 2011. Was North Africa the Launch Pad for Modern Human Migrations?. Science [Internet] 331:20–23. Available from: http://dx.doi.org/10.1126/science.331.6013.20
2010
Navascués M, Depaulis F, and Emerson BC. 2010. Combining contemporary and ancient DNA in population genetic and phylogeographical studies. Molecular Ecology Resources [Internet] 10:760–772. Available from: http://dx.doi.org/10.1111/j.1755-0998.2010.02895.x
Wollstein A, Lao O, Becker C, Brauer S, Trent RJ, Nürnberg P, Stoneking M, and Kayser M. 2010. Demographic History of Oceania Inferred from Genome-wide Data. Current Biology [Internet]. Available from: http://dx.doi.org/10.1016/j.cub.2010.10.040
Li C, Li H, Cui Y, Xie C, Cai D, Li W, Mair V, Xu Z, Zhang QC, Abuduresule I, et al. 2010. Evidence that a West-East admixed population lived in the Tarim Basin as early as the early Bronze Age. BMC Biology [Internet] 8:15+. Available from: http://dx.doi.org/10.1186/1741-7007-8-15
Campbell MC, and Tishkoff SA. 2010. The evolution of human genetic and phenotypic variation in Africa. Current biology : CB [Internet] 20:R166–R173. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.050
O'Dushlaine C, McQuillan R, Weale ME, Crouch DJM, Johansson A, Aulchenko Y, Franklin CS, Polasek O, Fuchsberger C, Corvin A, et al. 2010. Genes predict village of origin in rural Europe. European Journal of Human Genetics [Internet] 18:1269–1270. Available from: http://dx.doi.org/10.1038/ejhg.2010.92
Piel FB, Patil AP, Howes RE, Nyangiri OA, Gething PW, Williams TN, Weatherall DJ, and Hay SI. 2010. Global distribution of the sickle cell gene and geographical confirmation of the malaria hypothesis. Nature Communications [Internet] 1:104+. Available from: http://dx.doi.org/10.1038/ncomms1104
Drineas P, Lewis J, and Paschou P. 2010. Inferring geographic coordinates of origin for Europeans using small panels of ancestry informative markers. PLoS One 5:e11892.
Malyarchuk B, Derenko M, Grzybowski T, Perkova M, Rogalla U, Vanecek T, and Tsybovsky I. 2010. The peopling of Europe from the mitochondrial haplogroup U5 perspective. PLoS One 5:e10285.
Cox M, and Hammer M. 2010. A question of scale: Human migrations writ large and small. BMC Biology [Internet] 8:98+. Available from: http://dx.doi.org/10.1186/1741-7007-8-98
2009
Perez IS, Bernal V, Gonzalez PN, Sardi M, and Politis GG. 2009. Discrepancy between Cranial and DNA Data of Early Americans: Implications for American Peopling. PLoS ONE [Internet] 4:e5746+. Available from: http://dx.doi.org/10.1371/journal.pone.0005746
Berniell-Lee G, Calafell F, Bosch E, Heyer E, Sica L, Mouguiama-Daouda P, van der Veen L, Hombert J-M, Quintana-Murci L, and Comas D. 2009. Genetic and Demographic Implications of the Bantu Expansion: Insights from Human Paternal Lineages. Molecular Biology and Evolution [Internet] 26:1581–1589. Available from: http://dx.doi.org/10.1093/molbev/msp069
Poloni ES, Naciri Y, Bucho R, Niba R, Kervaire B, Excoffier L, Langaney A, and Sanchez-Mazas A. 2009. Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics [Internet]. Available from: http://dx.doi.org/10.1111/j.1469-1809.2009.00541.x
Auton A, Bryc K, Boyko AR, Lohmueller KE, Novembre J, Reynolds A, Indap A, Wright MH, Degenhardt JD, Gutenkunst RN, et al. 2009. Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Research [Internet] 19:795–803. Available from: http://dx.doi.org/10.1101/gr.088898.108
Tofanelli S, Ferri G, Bulayeva K, Caciagli L, Onofri V, Taglioli L, Bulayev O, Boschi I, Alu M, Berti A, et al. 2009. J1-M267 Y lineage marks climate-driven pre-historical human displacements. European Journal of Human Genetics [Internet] 17:1520–1524. Available from: http://dx.doi.org/10.1038/ejhg.2009.58
Cerný V, Fernandes V, Costa MD, Hájek M, Mulligan CJ, and Pereira L\'ısa. 2009. Migration of Chadic speaking pastoralists within Africa based on population structure of Chad Basin and phylogeography of mitochondrial L3f haplogroup. BMC evolutionary biology [Internet] 9:63+. Available from: http://dx.doi.org/10.1186/1471-2148-9-63
Perez SI, and Monteiro LR. 2009. Nonrandom factors in modern human morphological diversification: A study of craniofacial variation in southern South American populations. Evolution [Internet] 63:978–993. Available from: http://dx.doi.org/10.1111/j.1558-5646.2008.00539.x
Kumar S, Ravuri RRR, Koneru P, Urade BP, Sarkar BN, Chandrasekar A, and Rao VR. 2009. Reconstructing Indian-Australian phylogenetic link. BMC evolutionary biology [Internet] 9:173+. Available from: http://dx.doi.org/10.1186/1471-2148-9-173
Bailey G. 2009. The Red Sea, Coastal Landscapes, and Hominin Dispersals. In: Delson E, MacPhee RE, Petraglia M, Rose J The Evolution of Human Populations in Arabia. The Evolution of Human Populations in Arabia. Dordrecht: Springer Netherlands. p 15-37–37. Available from: http://dx.doi.org/10.1007/978-90-481-2719-1\_2
Novembre J, and Di Rienzo A. 2009. Spatial patterns of variation due to natural selection in humans. Nature Reviews Genetics [Internet] 10:745–755. Available from: http://dx.doi.org/10.1038/nrg2632
Balme J, Davidson I, McDonald J, Stern N, and Veth P. 2009. Symbolic behaviour and the peopling of the southern arc route to Australia. Quaternary International 202:59 - 68.
2008
Tian C, Plenge RM, Ransom M, Lee A, Villoslada P, Selmi C, Klareskog L, Pulver AE, Qi L, Gregersen PK, et al. 2008. Analysis and application of European genetic substructure using 300 K SNP information. PLoS genetics [Internet] 4:e4+. Available from: http://dx.doi.org/10.1371/journal.pgen.0040004
Singh Malhi R, Gonzalez-Oliver A, Schroeder KB, Kemp BM, Greenberg JA, Dobrowski SZ, Smith DG, Resendez A, Karafet T, Hammer M, et al. 2008. Distribution of Y chromosomes among native North Americans: A study of Athapaskan population history. Am. J. Phys. Anthropol. [Internet] 137:412–424. Available from: http://dx.doi.org/10.1002/ajpa.20883
Kumar S, Padmanabham PB, Ravuri RR, Uttaravalli K, Koneru P, Mukherjee AP, Das B, Kotal M, Xaviour D, Saheb SY, et al. 2008. The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage. BMC evolutionary biology [Internet] 8:230+. Available from: http://dx.doi.org/10.1186/1471-2148-8-230
Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, Indap A, King KS, Bergmann S, Nelson MR, et al. 2008. Genes mirror geography within Europe. Nature 456:98-101.
Kayser M, Choi Y, van Oven M, Mona S, Brauer S, Trent RJ, Suarkia D, Schiefenhövel W, and Stoneking M. 2008. The impact of the Austronesian expansion: evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia. Molecular biology and evolution [Internet] 25:1362–1374. Available from: http://dx.doi.org/10.1093/molbev/msn078
Cox M, Woerner A, Wall J, and Hammer M. 2008. Intergenic DNA sequences from the human X chromosome reveal high rates of global gene flow. BMC Genetics [Internet] 9:76+. Available from: http://dx.doi.org/10.1186/1471-2156-9-76
Rosset S, Wells SR, Soria-Hernanz DF, Tyler-Smith C, Royyuru AK, Behar DM, and and Consortium TG. 2008. Maximum-Likelihood Estimation of Site-Specific Mutation Rates in Human Mitochondrial DNA From Partial Phylogenetic Classification. Genetics [Internet] 180:1511–1524. Available from: http://dx.doi.org/10.1534/genetics.108.091116
Wall JD, Cox MP, Mendez FL, Woerner A, Severson T, and Hammer MF. 2008. A novel DNA sequence database for analyzing human demographic history. Genome Research [Internet] 18:1354–1361. Available from: http://dx.doi.org/10.1101/gr.075630.107
Melchior L, Gilbert MT, Kivisild T, Lynnerup N, and Dissing J. 2008. Rare mtDNA haplogroups and genetic differences in rich and poor Danish Iron-Age villages. American journal of physical anthropology [Internet] 135:206–215. Available from: http://dx.doi.org/10.1002/ajpa.20721
2007
Burger J, Kirchner M, Bramanti B, Haak W, and Thomas MG. 2007. Absence of the lactase-persistence-associated allele in early Neolithic Europeans. Proceedings of the National Academy of Sciences [Internet] 104:3736–3741. Available from: http://dx.doi.org/10.1073/pnas.0607187104
Linz B, Balloux F, Moodley Y, Manica A, Liu H, Roumagnac P, Falush D, Stamer C, Prugnolle F, van der Merwe SW, et al. 2007. An African origin for the intimate association between humans and Helicobacter pylori. Nature [Internet] 445:915–918. Available from: http://dx.doi.org/10.1038/nature05562
Langergraber KE, Siedel H, Mitani JC, Wrangham RW, Reynolds V, Hunt K, and Vigilant L. 2007. The Genetic Signature of Sex-Biased Migration in Patrilocal Chimpanzees and Humans. PLoS ONE [Internet] 2:e973+. Available from: http://dx.doi.org/10.1371/journal.pone.0000973
Perez SI, Bernal V, and Gonzalez PN. 2007. Morphological differentiation of aboriginal human populations from Tierra del Fuego (Patagonia): Implications for South American peopling. Am. J. Phys. Anthropol. [Internet] 133:1067–1079. Available from: http://dx.doi.org/10.1002/ajpa.20633
Hamilton MJ, and Buchanan B. 2007. Spatial gradients in Clovis-age radiocarbon dates across North America suggest rapid colonization from the north. Proceedings of the National Academy of Sciences [Internet] 104:15625–15630. Available from: http://dx.doi.org/10.1073/pnas.0704215104
Gonder MK, Mortensen HM, Reed FA, de Sousa A, and Tishkoff SA. 2007. Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages. Molecular Biology and Evolution [Internet] 24:757–768. Available from: http://dx.doi.org/10.1093/molbev/msl209
2006
Rahimi Z, Merat A, Gérard N, Krishnamoorthy R, and Nagel. 2006. Implications of the Genetic Epidemiology of Globin Haplotypes Linked to the Sickle Cell Gene in Southern Iran. Human Biology [Internet] 78:719–731. Available from: http://muse.jhu.edu/journals/human\_biology/v078/78.6rahimi.html
2005
Derricourt R. 2005. Getting “Out of Africa”: Sea Crossings, Land Crossings and Culture in the Hominin Migrations. Journal of World Prehistory [Internet] 19:119-132–132. Available from: http://dx.doi.org/10.1007/s10963-006-9002-z

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.