john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 44 results
Filters: Keyword is Ancient DNA  [Clear All Filters]
2013
Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenborn D, Moiseyev V, Kolpakov E, et al. 2013. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genet 9:e1003296.
Fu Q, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, and Pääbo S. 2013. DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci U S A.
Green RE, and Shapiro B. 2013. Human evolution: turning back the clock. Curr Biol 23:R286-8.
Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, et al. 2013. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr Biol 23:553-9.
2012
Disotell TR. 2012. Archaic human genomics. American Journal of Physical Anthropology:n/a - n/a.
Eriksson A, and Manica A. 2012. Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins. Proceedings of the National Academy of Sciences.
Pinhasi R, Thomas MG, Hofreiter M, Currat M, and Burger J. 2012. The genetic history of Europeans. Trends in genetics : TIG.
Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MTP, Willerslev E, et al. 2012. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proceedings of the Royal Society B: Biological Sciences.
Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, et al. 2012. A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science 338:222-226.
Lalueza-Fox C, Gigli E, Sánchez-Quinto F, de la Rasilla M, Fortea J, and Rosas A. 2012. Issues from Neandertal genomics: Diversity, adaptation and hybridisation revised from the El Sidrón case study. Quaternary International 247:10 - 14.
Schweitzer MH, Zheng W, Cleland TP, and Bern M. 2012. Molecular analyses of dinosaur osteocytes supports the presence of endogenous molecules. Bone.
Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M, et al. 2012. New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing. Nature communications 3:698.
Mannino MA, Catalano G, Talamo S, Mannino G, Di Salvo R, Schimmenti V, Lalueza-Fox C, Messina A, Petruso D, Caramelli D, et al. 2012. Origin and Diet of the Prehistoric Hunter-Gatherers on the Mediterranean Island of Favignana (Ègadi Islands, Sicily). PLoS ONE 7:e49802.
Sawyer S, Krause J, Guschanski K, Savolainen V, and Pääbo S. 2012. Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One 7:e34131.
2011
Skoglund P, and Jakobsson M. 2011. Archaic human ancestry in East Asia. Proceedings of the National Academy of Sciences, U. S. A. 108:18301-18306.
Reich D, Patterson N, Kircher M, Delfin F, Nandineni MR, Pugach I, Ko AM-S, Ko Y-C, Jinam TA, Phipps ME, et al. 2011. Denisova admixture and the first modern human dispersals into southeast Asia and oceania. American journal of human genetics 89:516-28.
Guba Z, Hadadi É, Major Á, Furka T, Juhász E, Koós J, Nagy K, and Zeke T. 2011. HVS-I polymorphism screening of ancient human mitochondrial DNA provides evidence for N9a discontinuity and East Asian haplogroups in the Neolithic Hungary. Journal of Human Genetics.
Deguilloux M-F, Soler L, Pemonge M-H, Scarre C, Joussaume R, and Laporte L. 2011. News from the west: Ancient DNA from a French megalithic burial chamber. Am. J. Phys. Anthropol. [Internet] 144:108–118. Available from: http://dx.doi.org/10.1002/ajpa.21376
2010
Hawass Z, Gad YZ, Ismail S, Khairat R, Fathalla D, Hasan N, Ahmed A, Elleithy H, Ball M, Gaballah F, et al. 2010. Ancestry and Pathology in King Tutankhamun's Family. JAMA: The Journal of the American Medical Association [Internet] 303:638–647. Available from: http://dx.doi.org/10.1001/jama.2010.121
Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, Adler CJ, Der Sarkissian CSI, Brandt G, Schwarz C, Nicklisch N, et al. 2010. Ancient DNA from European Early Neolithic Farmers Reveals Their Near Eastern Affinities. PLoS Biol [Internet] 8:e1000536+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000536
Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, et al. 2010. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature [Internet] 463:757–762. Available from: http://dx.doi.org/10.1038/nature08835
Navascués M, Depaulis F, and Emerson BC. 2010. Combining contemporary and ancient DNA in population genetic and phylogeographical studies. Molecular Ecology Resources [Internet] 10:760–772. Available from: http://dx.doi.org/10.1111/j.1755-0998.2010.02895.x
Krause J, Fu Q, Good JM, Viola B, Shunkov MV, Derevianko AP, and Paabo S. 2010. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature [Internet] 464:894–897. Available from: http://dx.doi.org/10.1038/nature08976
Prufer K, Stenzel U, Hofreiter M, Paabo S, Kelso J, and Green R. 2010. Computational challenges in the analysis of ancient DNA. Genome Biology [Internet] 11:R47+. Available from: http://dx.doi.org/10.1186/gb-2010-11-5-r47
Martinón-Torres M\'ıa, Dennell R, and Bermúdez de Castro JM. 2010. The Denisova hominin need not be an out of Africa story. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2010.10.005
Li C, Li H, Cui Y, Xie C, Cai D, Li W, Mair V, Xu Z, Zhang QC, Abuduresule I, et al. 2010. Evidence that a West-East admixed population lived in the Tarim Basin as early as the early Bronze Age. BMC Biology [Internet] 8:15+. Available from: http://dx.doi.org/10.1186/1741-7007-8-15
Melchior L, Lynnerup N, Siegismund HR, Kivisild T, and Dissing J. 2010. Genetic Diversity among Ancient Nordic Populations. PLoS ONE [Internet] 5:e11898+. Available from: http://dx.doi.org/10.1371/journal.pone.0011898
Lorenzen ED, and Willerslev E. 2010. King Tutankhamun's Family and Demise. JAMA: The Journal of the American Medical Association [Internet] 303:2471. Available from: http://dx.doi.org/10.1001/jama.2010.818
Timmann C, and Meyer CG. 2010. King Tutankhamun's Family and Demise. JAMA: The Journal of the American Medical Association [Internet] 303:2473. Available from: http://dx.doi.org/10.1001/jama.2010.822
Noonan JP. 2010. Neanderthal genomics and the evolution of modern humans. Genome research [Internet] 20:547–553. Available from: http://dx.doi.org/10.1101/gr.076000.108
2009
Malmström H, Gilbert, Thomas MG, Brandström M, Stor\r{a} J, Molnar P, Andersen PK, Bendixen C, Holmlund G, and Götherström A. 2009. Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians. Current Biology [Internet] 19:1758–1762. Available from: http://dx.doi.org/10.1016/j.cub.2009.09.017
Gigli E, Rasmussen M, Civit S, Rosas A, de la Rasilla M, Fortea J, Gilbert TMP, Willerslev E, and Lalueza-Fox C. 2009. An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers. Journal of Archaeological Science 36:2676 - 2679.
Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, and Pääbo S. 2009. The Neandertal genome and ancient DNA authenticity. The EMBO Journal 28:2494 - 2502.
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, and Pääbo S. 2009. Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources. J Vis Exp:1573.
2008
Caramelli D, Milani L, Vai S, Modi A, Pecchioli E, Girardi M, Pilli E, Lari M, Lippi B, Ronchitelli A, et al. 2008. A 28,000 years old Cro-Magnon mtDNA sequence differs from all potentially contaminating modern sequences. PloS one [Internet] 3. Available from: http://dx.doi.org/10.1371/journal.pone.0002700
Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, et al. 2008. A complete neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell [Internet] 134:416–426. Available from: http://dx.doi.org/10.1016/j.cell.2008.06.021
Melchior L, Gilbert MT, Kivisild T, Lynnerup N, and Dissing J. 2008. Rare mtDNA haplogroups and genetic differences in rich and poor Danish Iron-Age villages. American journal of physical anthropology [Internet] 135:206–215. Available from: http://dx.doi.org/10.1002/ajpa.20721
2007
Töpf AL, Gilbert MTP, Fleischer RC, and Hoelzel AR. 2007. Ancient human mtDNA genotypes from England reveal lost variation over the last millennium. Biology letters 3:550-3.
Wall JD, and Kim SK. 2007. Inconsistencies in Neanderthal genomic DNA sequences. PLoS Genet 3:1862-6.
2006
Sampietro ML, Gilbert TMP, Lao O, Caramelli D, Lari M, Bertranpetit J, and Lalueza-Fox C. 2006. Tracking down human contamination in ancient human teeth. Mol Biol Evol 23:1801-7.
2005
Rudbeck L, Gilbert MTP, Willerslev E, Hansen AJ, Lynnerup N, Christensen T, and Dissing J. 2005. mtDNA analysis of human remains from an early Danish Christian cemetery. Am. J. Phys. Anthropol. [Internet] 128:424–429. Available from: http://dx.doi.org/10.1002/ajpa.20294
2001
Geigl EM. 2001. Inadequate use of molecular hybridization to analyze DNA in Neanderthal fossils. American journal of human genetics [Internet] 68:287–291. Available from: http://dx.doi.org/10.1086/316948
2000
Cooper A, and Poinar HN. 2000. Ancient DNA: do it right or not at all. Science (New York, N.Y.) [Internet] 289. Available from: http://view.ncbi.nlm.nih.gov/pubmed/10970224
Scholz M, Bachmann L, Nicholson G, Bachmann J, Giddings I, Ruschoffthale B, Czarnetzki A, and Pusch C. 2000. Genomic Differentiation of Neanderthals and Anatomically Modern Man Allows a Fossil–DNA-Based Classification of Morphologically Indistinguishable Hominid Bones. The American Journal of Human Genetics [Internet] 66:1927–1932. Available from: http://dx.doi.org/10.1086/302949

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.