john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 23 results
Filters: Keyword is population ġenetics  [Clear All Filters]
2012
De Mita S, and Siol M. 2012. EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC genetics 13:27.
Keinan A, and Clark AG. 2012. Recent Explosive Human Population Growth Has Resulted in an Excess of Rare Genetic Variants. Science 336:740 - 743.
2011
Scheinfeldt LB, Biswas S, Madeoy J, Connelly CF, and Akey J. 2011. Clusters of adaptive evolution in the human genome. Frontiers in Genetics 2.
Tennessen JA, O'Connor TD, Bamshad MJ, and Akey JM. 2011. The promise and limitations of population exomics for human evolution studies. Genome biology 12:127.
2010
Navascués M, Depaulis F, and Emerson BC. 2010. Combining contemporary and ancient DNA in population genetic and phylogeographical studies. Molecular Ecology Resources [Internet] 10:760–772. Available from: http://dx.doi.org/10.1111/j.1755-0998.2010.02895.x
Lynch M. 2010. Rate, molecular spectrum, and consequences of human mutation. Proceedings of the National Academy of Sciences [Internet] 107:961–968. Available from: http://dx.doi.org/10.1073/pnas.0912629107
Pavlidis P, Jensen JD, and Stephan W. 2010. Searching for footprints of positive selection in whole-genome SNP data from nonequilibrium populations. Genetics [Internet] 185:907–922. Available from: http://dx.doi.org/10.1534/genetics.110.116459
Kim Y, and Gulisija D. 2010. Signatures of Recent Directional Selection Under Different Models of Population Expansion During Colonization of New Selective Environments. Genetics [Internet] 184:571–585. Available from: http://dx.doi.org/10.1534/genetics.109.109447
Wilf HS, and Ewens WJ. 2010. There's plenty of time for evolution. Proceedings of the National Academy of Sciences [Internet] 107:22454–22456. Available from: http://dx.doi.org/10.1073/pnas.1016207107
2009
Nielsen R, Hubisz MJ, Hellmann I, Torgerson D, Andrés AM, Albrechtsen A, Gutenkunst R, Adams MD, Cargill M, Boyko A, et al. 2009. Darwinian and demographic forces affecting human protein coding genes. Genome research [Internet] 19:838–849. Available from: http://dx.doi.org/10.1101/gr.088336.108
Eyre-Walker A, and Keightley PD. 2009. Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change. Molecular Biology and Evolution [Internet] 26:2097–2108. Available from: http://dx.doi.org/10.1093/molbev/msp119
Gutenkunst RN, Hernandez RD, Williamson SH, and Bustamante CD. 2009. Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data. PLoS Genet [Internet] 5:e1000695+. Available from: http://dx.doi.org/10.1371/journal.pgen.1000695
Linnen CR, and Hoekstra HE. 2009. Measuring Natural Selection on Genotypes and Phenotypes in the Wild. Cold Spring Harbor Symposia on Quantitative Biology [Internet] 74:155–168. Available from: http://dx.doi.org/10.1101/sqb.2009.74.045
Siepel A. 2009. Phylogenomics of primates and their ancestral populations. Genome research 19:1929-41.
Scheinfeldt LB, Biswas S, Madeoy J, Connelly CF, Schadt EE, and Akey JM. 2009. Population genomic analysis of ALMS1 in humans reveals a surprisingly complex evolutionary history. Molecular biology and evolution 26:1357-67.
Novembre J, and Di Rienzo A. 2009. Spatial patterns of variation due to natural selection in humans. Nature Reviews Genetics [Internet] 10:745–755. Available from: http://dx.doi.org/10.1038/nrg2632
2008
Prentis PJ, Wilson JR, Dormontt EE, Richardson DM, and Lowe AJ. 2008. Adaptive evolution in invasive species. Trends in plant science [Internet] 13:288–294. Available from: http://dx.doi.org/10.1016/j.tplants.2008.03.004
2007
Gutenkunst RN, Waterfall JJ, Casey FP, Brown KS, Myers CR, and Sethna JP. 2007. Universally Sloppy Parameter Sensitivities in Systems Biology Models. PLoS Comput Biol [Internet] 3:e189+. Available from: http://dx.doi.org/10.1371/journal.pcbi.0030189
2006
Pennings PS, and Hermisson J. 2006. Soft sweeps III: the signature of positive selection from recurrent mutation. PLoS genetics [Internet] 2:e186+. Available from: http://dx.doi.org/10.1371/journal.pgen.0020186
Pennings PS, and Hermisson J. 2006. Soft Sweeps II–Molecular Population Genetics of Adaptation from Recurrent Mutation or Migration. Mol Biol Evol [Internet] 23:1076–1084. Available from: http://dx.doi.org/10.1093/molbev/msj117
2005
Hermisson J, and Pennings PS. 2005. Soft Sweeps: Molecular Population Genetics of Adaptation From Standing Genetic Variation. Genetics [Internet] 169:2335–2352. Available from: http://dx.doi.org/10.1534/genetics.104.036947
1999
Olson MV. 1999. When less is more: gene loss as an engine of evolutionary change. American journal of human genetics [Internet] 64:18–23. Available from: http://dx.doi.org/10.1086/302219
1998
Hartl D, and Taubes C. 1998. Towards a theory of evolutionary adaptation. Genetica [Internet] 102-103:525–533. Available from: http://dx.doi.org/10.1023/A:1017071901530

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.