john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 85 results
Filters: Keyword is mtDNA  [Clear All Filters]
2013
Green RE, and Shapiro B. 2013. Human evolution: turning back the clock. Curr Biol 23:R286-8.
Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, et al. 2013. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr Biol 23:553-9.
2012
Haber M, Platt DE, Ashrafian Bonab M, Youhanna SC, Soria-Hernanz DF, Martínez-Cruz B, Douaihy B, Ghassibe-Sabbagh M, Rafatpanah H, Ghanbari M, et al. 2012. Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events. PloS one 7:e34288.
Fu Q, Rudan P, Pääbo S, and Krause J. 2012. Complete mitochondrial genomes reveal Neolithic expansion into Europe. PloS one 7:e32473.
Behar  M, van Oven M, Rosset S, Metspalu M, Loogväli E-L, Silva  M, Kivisild T, Torroni A, and Villems R. 2012. A “Copernican” Reassessment of the Human Mitochondrial DNA Tree from its Root. The American Journal of Human Genetics 90:675 - 684.
Schon EA, Dimauro S, and Hirano M. 2012. Human mitochondrial DNA: roles of inherited and somatic mutations. Nat Rev Genet 13:878-90.
Rasteiro R, Bouttier P-A, Sousa VC, and Chikhi L. 2012. Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework. Proceedings. Biological sciences / The Royal Society.
Dalén L, Orlando L, Shapiro B, Durling MB, Quam R, Gilbert TMP, Díez Fernández-Lomana CJ, Willerslev E, Arsuaga JL, and Götherström A. 2012. Partial genetic turnover in Neandertals: continuity in the east and population replacement in the west. Molecular biology and evolution 29:1893-1897.
Balter M. 2012. The Peopling of the Aleutians. Science 335:158 - 161.
2011
Gunnarsdóttir ED, Li M, Bauchet M, Finstermeier K, and Stoneking M. 2011. High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research [Internet] 21:1–11. Available from: http://dx.doi.org/10.1101/gr.107615.110
Guba Z, Hadadi É, Major Á, Furka T, Juhász E, Koós J, Nagy K, and Zeke T. 2011. HVS-I polymorphism screening of ancient human mitochondrial DNA provides evidence for N9a discontinuity and East Asian haplogroups in the Neolithic Hungary. Journal of Human Genetics.
Batini C, Lopes J, Behar DM, Calafell F, Jorde LB, van der Veen L, Quintana-Murci L, Spedini G, Destro-Bisol G, and Comas D. 2011. Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes. Molecular Biology and Evolution [Internet] 28:1099–1110. Available from: http://dx.doi.org/10.1093/molbev/msq294
Tranah GJ, Manini TM, Lohman KK, Nalls MA, Kritchevsky S, Newman AB, Harris TB, Miljkovic I, Biffi A, Cummings SR, et al. 2011. Mitochondrial DNA variation in human metabolic rate and energy expenditure. Mitochondrion 11:855-61.
Ebenesersdóttir S\'ıðurS, Sigurðsson Á, Sánchez-Quinto F, Lalueza-Fox C, Stefánsson K, and Helgason A. 2011. A new subclade of mtDNA haplogroup C1 found in icelanders: Evidence of pre-columbian contact?. Am. J. Phys. Anthropol. [Internet] 144:92–99. Available from: http://dx.doi.org/10.1002/ajpa.21419
Deguilloux M-F, Soler L, Pemonge M-H, Scarre C, Joussaume R, and Laporte L. 2011. News from the west: Ancient DNA from a French megalithic burial chamber. Am. J. Phys. Anthropol. [Internet] 144:108–118. Available from: http://dx.doi.org/10.1002/ajpa.21376
Ghirotto S, Tassi F, Benazzo A, and Barbujani G. 2011. No evidence of Neandertal admixture in the mitochondrial genomes of early European modern humans and contemporary Europeans. American journal of physical anthropology 146:242-52.
Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert TMP, and da Fonseca RR. 2011. Positive selection on the killer whale mitogenome. Biology letters 7:116-8.
2010
Cyran KA, and Kimmel M. 2010. Alternatives to the Wright–Fisher model: The robustness of mitochondrial Eve dating. Theoretical Population Biology [Internet]. Available from: http://dx.doi.org/10.1016/j.tpb.2010.06.001
Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, Adler CJ, Der Sarkissian CSI, Brandt G, Schwarz C, Nicklisch N, et al. 2010. Ancient DNA from European Early Neolithic Farmers Reveals Their Near Eastern Affinities. PLoS Biol [Internet] 8:e1000536+. Available from: http://dx.doi.org/10.1371/journal.pbio.1000536
Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt H-J, Torroni A, and Richards MB. 2010. The Archaeogenetics of Europe. [Internet] 20:R174–R183. Available from: http://www.cell.com/current-biology/abstract/S0960-9822(09)02069-7
Wallace DC. 2010. Colloquium paper: bioenergetics, the origins of complexity, and the ascent of man. Proceedings of the National Academy of Sciences of the United States of America 107 Suppl 2:8947-53.
Krause J, Fu Q, Good JM, Viola B, Shunkov MV, Derevianko AP, and Paabo S. 2010. The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature [Internet] 464:894–897. Available from: http://dx.doi.org/10.1038/nature08976
Martinón-Torres M\'ıa, Dennell R, and Bermúdez de Castro JM. 2010. The Denisova hominin need not be an out of Africa story. Journal of Human Evolution [Internet]. Available from: http://dx.doi.org/10.1016/j.jhevol.2010.10.005
Melchior L, Lynnerup N, Siegismund HR, Kivisild T, and Dissing J. 2010. Genetic Diversity among Ancient Nordic Populations. PLoS ONE [Internet] 5:e11898+. Available from: http://dx.doi.org/10.1371/journal.pone.0011898
Zhong H, Shi H, Qi X-BB, Xiao C-JJ, Jin L, Ma RZ, and Su B. 2010. Global distribution of Y-chromosome haplogroup C reveals the prehistoric migration routes of African exodus and early settlement in East Asia. Journal of human genetics [Internet] 55:428–435. Available from: http://dx.doi.org/10.1038/jhg.2010.40
Stoneking M, and Delfin F. 2010. The Human Genetic History of East Asia: Weaving a Complex Tapestry. Current Biology [Internet] 20:R188–R193. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.052
Perego UA, Angerhofer N, Pala M, Olivieri A, Lancioni H, Kashani BH, Carossa V, Ekins JE, Gómez-Carballa A, Huber G, et al. 2010. The initial peopling of the Americas: A growing number of founding mitochondrial genomes from Beringia. Genome Research [Internet] 20:1174–1179. Available from: http://dx.doi.org/10.1101/gr.109231.110
Malyarchuk B, Derenko M, Grzybowski T, Perkova M, Rogalla U, Vanecek T, and Tsybovsky I. 2010. The peopling of Europe from the mitochondrial haplogroup U5 perspective. PLoS One 5:e10285.
Cox M, and Hammer M. 2010. A question of scale: Human migrations writ large and small. BMC Biology [Internet] 8:98+. Available from: http://dx.doi.org/10.1186/1741-7007-8-98
Quintana-Murci L, Harmant C, Quach H, Balanovsky O, Zaporozhchenko V, Bormans C, van Helden PD, Hoal EG, and Behar DM. 2010. Strong Maternal Khoisan Contribution to the South African Coloured Population: A Case of Gender-Biased Admixture. [Internet] 86:611–620. Available from: http://www.cell.com/AJHG/abstract/S0002-9297(10)00096-0
2009
Malmström H, Gilbert, Thomas MG, Brandström M, Stor\r{a} J, Molnar P, Andersen PK, Bendixen C, Holmlund G, and Götherström A. 2009. Ancient DNA Reveals Lack of Continuity between Neolithic Hunter-Gatherers and Contemporary Scandinavians. Current Biology [Internet] 19:1758–1762. Available from: http://dx.doi.org/10.1016/j.cub.2009.09.017
Atkinson QD, Gray RD, and Drummond AJ. 2009. Bayesian coalescent inference of major human mitochondrial DNA haplogroup expansions in Africa. Proceedings. Biological sciences / The Royal Society [Internet] 276:367–373. Available from: http://dx.doi.org/10.1098/rspb.2008.0785
Henn BM, Gignoux CR, Feldman MW, and Mountain JL. 2009. Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates. Molecular Biology and Evolution [Internet] 26:217–230. Available from: http://dx.doi.org/10.1093/molbev/msn244
Jensen-Seaman M, Wildschutte J, Soto-Calderón I, and Anthony N. 2009. A Comparative Approach Shows Differences in Patterns of Numt Insertion During Hominoid Evolution. Journal of Molecular Evolution [Internet] 68:688–699. Available from: http://dx.doi.org/10.1007/s00239-009-9243-4
Soares P, Ermini L, Thomson N, Mormina M, Rito T, Röhl A, Salas A, Oppenheimer S, Macaulay V, and Richards MB. 2009. Correcting for purifying selection: an improved human mitochondrial molecular clock. American journal of human genetics [Internet] 84:740–759. Available from: http://dx.doi.org/10.1016/j.ajhg.2009.05.001
Perez IS, Bernal V, Gonzalez PN, Sardi M, and Politis GG. 2009. Discrepancy between Cranial and DNA Data of Early Americans: Implications for American Peopling. PLoS ONE [Internet] 4:e5746+. Available from: http://dx.doi.org/10.1371/journal.pone.0005746
McEvoy BP, Zhao ZZ, Macgregor S, Bellis C, Lea RA, Cox H, Montgomery GW, Griffiths LR, and Visscher PM. 2009. European and Polynesian admixture in the Norfolk Island population. Heredity [Internet] 105:229–234. Available from: http://dx.doi.org/10.1038/hdy.2009.175
Endicott P, Ho SYW, Metspalu M, and Stringer C. 2009. Evaluating the mitochondrial timescale of human evolution. Trends in Ecology & Evolution [Internet] 24:515–521. Available from: http://dx.doi.org/10.1016/j.tree.2009.04.006
Loogväli E-L, Kivisild T, Margus T, and Villems R. 2009. Explaining the Imperfection of the Molecular Clock of Hominid Mitochondria. PLoS ONE [Internet] 4:e8260+. Available from: http://dx.doi.org/10.1371/journal.pone.0008260
Seger J, Smith WA, Perry JJ, Hunn J, Kaliszewska ZA, La Sala L, Pozzi L, Rowntree VJ, and Adler FR. 2009. Gene Genealogies Strongly Distorted by Weakly Interfering Mutations in Constant Environments. Genetics [Internet] 184:genetics.109.103556–545. Available from: http://dx.doi.org/10.1534/genetics.109.103556
Poloni ES, Naciri Y, Bucho R, Niba R, Kervaire B, Excoffier L, Langaney A, and Sanchez-Mazas A. 2009. Genetic Evidence for Complexity in Ethnic Differentiation and History in East Africa. Annals of human genetics [Internet]. Available from: http://dx.doi.org/10.1111/j.1469-1809.2009.00541.x
Fabre V, Condemi S, and Degioanni A. 2009. Genetic evidence of geographical groups among Neanderthals. PloS one 4:e5151.
Tishkoff SA, Reed FA, Friedlaender FR, Ehret C, Ranciaro A, Froment A, Hirbo JB, Awomoyi AA, Bodo J-M, Doumbo O, et al. 2009. The Genetic Structure and History of Africans and African Americans. Science [Internet] 324:1035–1044. Available from: http://dx.doi.org/10.1126/science.1172257
Gigli E, Rasmussen M, Civit S, Rosas A, de la Rasilla M, Fortea J, Gilbert TMP, Willerslev E, and Lalueza-Fox C. 2009. An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers. Journal of Archaeological Science 36:2676 - 2679.
Cerný V, Fernandes V, Costa MD, Hájek M, Mulligan CJ, and Pereira L\'ısa. 2009. Migration of Chadic speaking pastoralists within Africa based on population structure of Chad Basin and phylogeography of mitochondrial L3f haplogroup. BMC evolutionary biology [Internet] 9:63+. Available from: http://dx.doi.org/10.1186/1471-2148-9-63
Gershoni M, Templeton AR, and Mishmar D. 2009. Mitochondrial bioenergetics as a major motive force of speciation. Bioessays [Internet] 31:642–650. Available from: http://dx.doi.org/10.1002/bies.200800139
Rollins B, Martin MV, Sequeira AP, Moon EA, Morgan LZ, Watson SJ, Schatzberg A, Akil H, Myers RM, Jones EG, et al. 2009. Mitochondrial variants in schizophrenia, bipolar disorder, and major depressive disorder. PloS one [Internet] 4. Available from: http://dx.doi.org/10.1371/journal.pone.0004913
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajković D, Kućan Ż, et al. 2009. Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes. Science [Internet] 325:318–321. Available from: http://dx.doi.org/10.1126/science.1174462
van Oven M, and Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human mutation [Internet] 30. Available from: http://dx.doi.org/10.1002/humu.20921
Chandrasekar A, Kumar S, Sreenath J, Sarkar BN, Urade BP, Mallick S, Bandopadhyay SS, Barua P, Barik SS, Basu D, et al. 2009. Updating Phylogeny of Mitochondrial DNA Macrohaplogroup M in India: Dispersal of Modern Human in South Asian Corridor. PLoS ONE [Internet] 4:e7447+. Available from: http://dx.doi.org/10.1371/journal.pone.0007447

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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.