john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 46 results
Filters: Keyword is adaptation  [Clear All Filters]
2013
Fraser HB. 2013. Gene expression drives local adaptation in humans. Genome Res.
Huerta-Sanchez E, Degiorgio M, Pagani L, Tarekegn A, Ekong R, Antao T, Cardona A, Montgomery HE, Cavalleri GL, Robbins PA, et al. 2013. Genetic signatures reveal high-altitude adaptation in a set of Ethiopian populations. Mol Biol Evol.
Axelsson E, Ratnakumar A, Arendt M-L, Maqbool K, Webster MT, Perloski M, Liberg O, Arnemo JM, Hedhammar Å, and Lindblad-Toh K. 2013. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature.
2012
Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, and Di Rienzo A. 2012. The genetic architecture of adaptations to high altitude in Ethiopia. PLoS Genet 8:e1003110.
Pagani L, Ayub Q, Macarthur DG, Xue Y, Baillie KJ, Chen Y, Kozarewa I, Turner DJ, Tofanelli S, Bulayeva K, et al. 2012. High altitude adaptation in Daghestani populations from the Caucasus. Human genetics 131:423-33.
2011
Wills C. 2011. Genetic and phenotypic consequences of introgression between humans and neanderthals. Advances in genetics 76:27-54.
Mace R, and Jordan FM. 2011. Macro-evolutionary studies of cultural diversity: a review of empirical studies of cultural transmission and cultural adaptation. Philos Trans R Soc Lond B Biol Sci 366:402-11.
Verhoeven KJF, Macel M, Wolfe LM, and Biere A. 2011. Population admixture, biological invasions and the balance between local adaptation and inbreeding depression. Proceedings of the Royal Society B: Biological Sciences [Internet] 278:2–8. Available from: http://dx.doi.org/10.1098/rspb.2010.1272
2010
Pritchard JK, and Di Rienzo A. 2010. Adaptation - not by sweeps alone. Nature reviews. Genetics [Internet] 11:665–667. Available from: http://dx.doi.org/10.1038/nrg2880
Chevin L-M, Martin G, and Lenormand T. 2010. FISHER'S MODEL AND THE GENOMICS OF ADAPTATION: RESTRICTED PLEIOTROPY, HETEROGENOUS MUTATION, AND PARALLEL EVOLUTION. Evolution [Internet] 64:3213–3231. Available from: http://dx.doi.org/10.1111/j.1558-5646.2010.01058.x
Pritchard JK, Pickrell JK, and Coop G. 2010. The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation. Current Biology [Internet] 20:R208–R215. Available from: http://dx.doi.org/10.1016/j.cub.2009.11.055
Atkins KE, and Travis JMJ. 2010. Local adaptation and the evolution of species' ranges under climate change. Journal of Theoretical Biology [Internet] 266:449–457. Available from: http://dx.doi.org/10.1016/j.jtbi.2010.07.014
Beall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, Knight J, Li C, Li JC, Liang Y, McCormack M, et al. 2010. Natural selection on EPAS1 (HIF2α) associated with low hemoglobin concentration in Tibetan highlanders. Proceedings of the National Academy of Sciences [Internet] 107:11459–11464. Available from: http://dx.doi.org/10.1073/pnas.1002443107
Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, Xu X, Jiang H, Vinckenbosch N, Korneliussen TS, et al. 2010. Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude. Science [Internet] 329:75–78. Available from: http://dx.doi.org/10.1126/science.1190371
2009
Eyre-Walker A, and Keightley PD. 2009. Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change. Molecular Biology and Evolution [Internet] 26:2097–2108. Available from: http://dx.doi.org/10.1093/molbev/msp119
Barrick JE, Yu DS, Yoon SH, Jeong H, Oh TK, Schneider D, Lenski RE, and Kim JF. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature [Internet] 461:1243–1247. Available from: http://dx.doi.org/10.1038/nature08480
Sutter M, and Kawecki TJ. 2009. Influence of learning on range expansion and adaptation to novel habitats. Journal of Evolutionary Biology [Internet] 22:2201–2214. Available from: http://dx.doi.org/10.1111/j.1420-9101.2009.01836.x
2008
Kawecki TJ. 2008. Adaptation to Marginal Habitats. Annual Review of Ecology, Evolution, and Systematics [Internet] 39:321–342. Available from: http://dx.doi.org/10.1146/annurev.ecolsys.38.091206.095622
Enattah NS, Jensen TGK, Nielsen M, Lewinski R, Kuokkanen M, Rasinpera H, El-Shanti H, Seo JK, Alifrangis M, and Khalil IF. 2008. Independent Introduction of Two Lactase-Persistence Alleles into Human Populations Reflects Different History of Adaptation to Milk Culture. The American Journal of Human Genetics [Internet] 82:57–72. Available from: http://dx.doi.org/10.1016/j.ajhg.2007.09.012
2007
Perry GH, Dominy NJ, Claw KG, Lee AS, Fiegler H, Redon R, Werner J, Villanea FA, Mountain JL, Misra R, et al. 2007. Diet and the evolution of human amylase gene copy number variation. Nature genetics 39:1256-60.
Norton HL, Kittles RA, Parra E, McKeigue P, Mao X, Cheng K, Canfield VA, Bradley DG, McEvoy B, and Shriver MD. 2007. Genetic evidence for the convergent evolution of light skin in Europeans and East Asians. Molecular biology and evolution 24:710-22.
Myles S, Somel M, Tang K, Kelso J, and Stoneking M. 2007. Identifying genes underlying skin pigmentation differences among human populations. Human genetics 120:613-21.
Keightley PD, and Eyre-Walker A. 2007. Joint Inference of the Distribution of Fitness Effects of Deleterious Mutations and Population Demography Based on Nucleotide Polymorphism Frequencies. Genetics [Internet] 177:2251–2261. Available from: http://dx.doi.org/10.1534/genetics.107.080663
Bogin B, Silva MIV, and Rios L. 2007. Life history trade-offs in human growth: adaptation or pathology?. American journal of human biology : the official journal of the Human Biology Council 19:631-42.
Perry GH, Martin RD, and Verrelli BC. 2007. Signatures of functional constraint at aye-aye opsin genes: the potential of adaptive color vision in a nocturnal primate. Molecular biology and evolution 24:1963-70.
2006
Aldenderfer M. 2006. Modelling plateau peoples: the early human use of the world's high plateaux. World Archaeology 38:357 - 370.
Aldenderfer M. 2006. Modelling plateau peoples: the early human use of the world's high plateaux. World Archaeology 38:357 - 370.
Walsh EC, Sabeti P, Hutcheson HB, Fry B, Schaffner SF, Bakker PIW, Varilly P, Palma AA, Roy J, Cooper R, et al. 2006. Searching for signals of evolutionary selection in 168 genes related to immune function. Human Genetics 119:92 - 102.
2005
Weinstein KJ. 2005. Body proportions in ancient Andeans from high and low altitudes. American journal of physical anthropology 128:569-85.
2004
Holt RD, Knight TM, and Barfield M. 2004. Allee Effects, Immigration, and the Evolution of Species' Niches. The American Naturalist [Internet] 163. Available from: http://dx.doi.org/10.2307/3473275
Kawamura S, and Kubotera N. 2004. Ancestral loss of short wave-sensitive cone visual pigment in lorisiform prosimians, contrasting with its strict conservation in other prosimians. Journal of molecular evolution 58:314-21.
Holt RD, Barfield M, and Gomulkiewicz R. 2004. Temporal Variation Can Facilitate Niche Evolution in Harsh Sink Environments. The American Naturalist [Internet] 164. Available from: http://dx.doi.org/10.2307/3473438
2003
Bogin B, and Rios L. 2003. Rapid morphological change in living humans: implications for modern human origins. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 136:71-84.
2002
Ruff C. 2002. Variation in Human Body Size and Shape. Annual Review of Anthropology [Internet] 31. Available from: http://dx.doi.org/10.2307/4132878
2000
Hochberg ME, Gomulkiewicz R, Holt RD, and Thompson JN. 2000. Weak sinks could cradle mutualistic symbioses – strong sources should harbour parasitic symbioses. Journal of Evolutionary Biology [Internet] 13:213–222. Available from: http://dx.doi.org/10.1046/j.1420-9101.2000.00157.x
1999
Gomulkiewicz R, Holt RD, and Barfield M. 1999. The Effects of Density Dependence and Immigration on Local Adaptation and Niche Evolution in a Black-Hole Sink Environment. Theoretical Population Biology [Internet] 55:283–296. Available from: http://dx.doi.org/10.1006/tpbi.1998.1405
Dulai KS, von Dornum M, Mollon JD, and Hunt DM. 1999. The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates. Genome research 9:629-38.
Olson MV. 1999. When less is more: gene loss as an engine of evolutionary change. American journal of human genetics [Internet] 64:18–23. Available from: http://dx.doi.org/10.1086/302219
1998
Buss DM, Haselton MG, Shackelford TK, Bleske AL, and Wakefield JC. 1998. Adaptations, exaptations, and spandrels. Am Psychol 53:533-48.
1996
Dias P. 1996. Sources and sinks in population biology. Trends in Ecology & Evolution [Internet] 11:326–330. Available from: http://dx.doi.org/10.1016/0169-5347(96)10037-9
1992
Hill AVS, Elvin J, Willis AC, Aidoo M, Allsopp CEM, Gotch FM, Ming Gao X, Takiguchis M, Greenwood BM, Townsend ARM, et al. 1992. Molecular analysis of the association of HLA-B53 and resistance to severe malaria. Nature [Internet] 360:434–439. Available from: http://dx.doi.org/10.1038/360434a0
1959
Jr. 1959. Area, Climate, and Evolution. Evolution [Internet] 13. Available from: http://dx.doi.org/10.2307/2406131
1947
Beet EA. 1947. Sickle cell disease in Northern Rhodesia. East Afr Med J 24:212-22.
1946
Beet EA. 1946. Sickle cell disease in the Balovale District of Northern Rhodesia. East Afr Med J 23:75-86.
1943
Schmidt KP. 1943. Corollary and Commentary for "Climate and Evolution". American Midland Naturalist [Internet] 30. Available from: http://dx.doi.org/10.2307/2421273
0
Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert, and da Fonseca RR.0 Positive selection on the killer whale mitogenome. Biology Letters [Internet]. Available from: http://dx.doi.org/10.1098/rsbl.2010.0638

About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.