john hawks weblog

paleoanthropology, genetics and evolution

Bibliography

Found 12806 results
In Press
Hockett B. In Press. The consequences of Middle Paleolithic diets on pregnant Neanderthal women. [Internet]: - . Available from: http://www.sciencedirect.com/science/article/pii/S1040618211003776
2013
Druzhkova AS, Thalmann O, Trifonov VA, Leonard JA, Vorobieva NV, Ovodov ND, Graphodatsky AS, and Wayne RK. 2013. Ancient DNA Analysis Affirms the Canid from Altai as a Primitive Dog. PLoS ONE [Internet] 8:e57754. Available from: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0057754
Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenborn D, Moiseyev V, Kolpakov E, et al. 2013. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genet 9:e1003296.
Lane CS, Chorn BT, and Johnson TC. 2013. Ash from the Toba supereruption in Lake Malawi shows no volcanic winter in East Africa at 75 ka. Proceedings of the National Academy of Sciences.
Gokcumen O, Zhu Q, Mulder LCF, Iskow RC, Austermann C, Scharer CD, Raj T, Boss JM, Sunyaev S, Price A, et al. 2013. Balancing Selection on a Regulatory Region Exhibiting Ancient Variation That Predates Human–Neandertal Divergence. PLoS Genetics [Internet] 9:e1003404. Available from: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1003404
Zhou Y, Gao H, Mihindukulasuriya KA, Rosa PLAS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, et al. 2013. Biogeography of the ecosystems of the healthy human body. Genome Biol 14:R1.
Beyene Y, Katoh S, WoldeGabriel G, Hart WK, Uto K, Sudo M, Kondo M, Hyodo M, Renne PR, Suwa G, et al. 2013. The characteristics and chronology of the earliest Acheulean at Konso, Ethiopia. Proc Natl Acad Sci U S A 110:1584-91.
Raj T, Kuchroo M, Replogle JM, Raychaudhuri S, Stranger BE, and De Jager PL. 2013. Common risk alleles for inflammatory diseases are targets of recent positive selection. Am J Hum Genet 92:517-29.
Smith B, Baron N, English C, Galindo H, Goldman E, McLeod K, Miner M, and Neeley E. 2013. COMPASS: Navigating the Rules of Scientific Engagement. PLoS Biol 11:e1001552.
Ding W, Yang L, and Xiao W. 2013. Daytime birth and parturition assistant behavior in wild black-and-white snub-nosed monkeys (Rhinopithecus bieti) Yunnan,China. Behavioural Processes.
Wong L-P, Ong RT-H, Poh W-T, Liu X, Chen P, Li R, Lam KK-Y, Pillai NE, Sim K-S, Xu H, et al. 2013. Deep whole-genome sequencing of 100 Southeast Asian Malays. Am J Hum Genet 92:52-66.
Fu Q, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, and Pääbo S. 2013. DNA analysis of an early modern human from Tianyuan Cave, China. Proc Natl Acad Sci U S A.
Ferraro JV, Plummer TW, Pobiner BL, Oliver JS, Bishop LC, Braun DR, Ditchfield PW, Seaman JW, Binetti KM, Seaman JW, et al. 2013. Earliest Archaeological Evidence of Persistent Hominin Carnivory. PLoS ONE [Internet] 8:e62174. Available from: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0062174
Ptashne M. 2013. Epigenetics: Core misconcept. Proc Natl Acad Sci U S A.
Berwick RC, Friederici AD, Chomsky N, and Bolhuis JJ. 2013. Evolution, brain, and the nature of language. Trends Cogn Sci.
Hawks J. 2013. Evolutionary biology: Twisting the tale of human evolution. Nature 495:172 - 172.
Brand A. 2013. Faculty appointments and the record of scholarship. eLife 2.
Sahnouni M, Rosell J, van der Made J, Vergès JM, Ollé A, Kandi N, Harichane Z, Derradji A, and Medig M. 2013. The first evidence of cut marks and usewear traces from the Plio-Pleistocene locality of El-Kherba (Ain Hanech), Algeria: implications for early hominin subsistence activities circa 1.8 Ma. Journal of Human Evolution 64:137 - 150.
Smith TM, Machanda Z, Bernard AB, Donovan RM, Papakyrikos AM, Muller MN, and Wrangham R. 2013. First molar eruption, weaning, and life history in living wild chimpanzees. Proc Natl Acad Sci U S A.
Ayub Q, Yngvadottir B, Chen Y, Xue Y, Hu M, Vernes SC, Fisher SE, and Tyler-Smith C. 2013. FOXP2 Targets Show Evidence of Positive Selection in European Populations. Am J Hum Genet.
Fraser HB. 2013. Gene expression drives local adaptation in humans. Genome Res.
Haber M, Gauguier D, Youhanna S, Patterson N, Moorjani P, Botigué LR, Platt DE, Matisoo-Smith E, Soria-Hernanz DF, Wells SR, et al. 2013. Genome-Wide Diversity in the Levant Reveals Recent Structuring by Culture. PLoS Genetics 9:e1003316.
Axelsson E, Ratnakumar A, Arendt M-L, Maqbool K, Webster MT, Perloski M, Liberg O, Arnemo JM, Hedhammar Å, and Lindblad-Toh K. 2013. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature.
Chen C, Chen C, Moyzis RK, He Q, Lei X, Li J, Zhu B, Xue G, and Dong Q. 2013. Genotypes over-represented among college students are linked to better cognitive abilities and socioemotional adjustment. Culture and Brain.
Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, and Slatkin M. 2013. Higher Levels of Neanderthal Ancestry in East Asians Than in Europeans. Genetics.
Green RE, and Shapiro B. 2013. Human evolution: turning back the clock. Curr Biol 23:R286-8.
Dean CM, and Cole TJ. 2013. Human Life History Evolution Explains Dissociation between the Timing of Tooth Eruption and Peak Rates of Root Growth. PLoS One 8:e54534.
Gymrek M, McGuire AL, Golan D, Halperin E, and Erlich Y. 2013. Identifying Personal Genomes by Surname Inference. Science 339:321 - 324.
Grossman SR, Andersen KG, Shlyakhter I, Tabrizi S, Winnicki S, Yen A, Park DJ, Griesemer D, Karlsson EK, Wong SH, et al. 2013. Identifying recent adaptations in large-scale genomic data. Cell 152:703-13.
Swee J, Silvestri AR, Finkelman MD, Rich AP, Alexander SA, and Loo CY. 2013. Inferior alveolar nerve block and third-molar agenesis: A retrospective clinical study. Journal of the American Dental Association 144:389-95.
Gattepaille LM, Jakobsson M, and Blum GBM. 2013. Inferring population size changes with sequence and SNP data: lessons from human bottlenecks. Heredity 110:409 - 419.
Liu W, Schepartz LA, Xing S, Miller-Antonio S, Wu X, Trinkaus E, and Martinón-Torres M. 2013. Late Middle Pleistocene hominin teeth from Panxian Dadong, South China. Journal of Human Evolution.
Nater A, Arora N, Greminger MP, van Schaik CP, Singleton I, Wich SA, Fredriksson G, Perwitasari-Farajallah D, Pamungkas J, and Krützen M. 2013. Marked Population Structure and Recent Migration in the Critically Endangered Sumatran Orangutan (Pongo abelii). J Hered 104:2-13.
Lucas PW, Omar R, Al-Fadhalah K, Almusallam AS, Henry AG, Michael S, Thai LA, Watzke J, Strait DS, and Atkins AG. 2013. Mechanisms and causes of wear in tooth enamel: implications for hominin diets. Journal of The Royal Society Interface 10:20120923 - 20120923.
Skinner MM, Kivell TL, Potze S, and Hublin J-J. 2013. Microtomographic archive of fossil hominin specimens from Kromdraai B, South Africa. J Hum Evol 64:434-47.
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Appenzeller T. 2013. Neanderthal culture: Old masters. Nature 497:302 - 304.
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Yang C. 2013. Ontogeny and phylogeny of language. Proceedings of the National Academy of Sciences.
Liu L, Bestel S, Shi J, Song Y, and Chen X. 2013. Paleolithic human exploitation of plant foods during the last glacial maximum in North China. Proc Natl Acad Sci U S A 110:5380-5.
Condemi S, Mounier A, Giunti P, Lari M, Caramelli D, and Longo L. 2013. Possible Interbreeding in Late Italian Neanderthals? New Data from the Mezzena Jaw (Monti Lessini, Verona, Italy). PLoS ONE [Internet] 8:e59781. Available from: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0059781
Nash DJ, Coulson S, Staurset S, Ullyott SJ, Babutsi M, Hopkinson L, and Smith MP. 2013. Provenancing of silcrete raw materials indicates long-distance transport to Tsodilo Hills, Botswana, during the Middle Stone Age. Journal of Human Evolution.
Wood RE, Barroso-Ruíz C, Caparrós M, Jordá Pardo JF, Galván Santos B, and Higham TFG. 2013. Radiocarbon dating casts doubt on the late chronology of the Middle to Upper Palaeolithic transition in southern Iberia. Proc Natl Acad Sci U S A.
Zahnleiter D, Uebe S, Ekici AB, Hoyer J, Wiesener A, Wieczorek D, Kunstmann E, Reis A, Doerr H-G, Rauch A, et al. 2013. Rare copy number variants are a common cause of short stature. PLoS Genet 9:e1003365.
Fu Q, Mittnik A, Johnson PLF, Bos K, Lari M, Bollongino R, Sun C, Giemsch L, Schmitz R, Burger J, et al. 2013. A revised timescale for human evolution based on ancient mitochondrial genomes. Curr Biol 23:553-9.
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Meadow JF, Bateman AC, Herkert KM, O’Connor TK, and Green JL. 2013. Significant changes in the skin microbiome mediated by the sport of roller derby. PeerJ [Internet] 1:e53. Available from: https://peerj.com/articles/53/
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About the bibliography

My bibliography database represents years of work by many people. The core of the database was compiled by Milford Wolpoff, with contributions from many students and coauthors. I have added substantially to the database during the last fifteen years, and since I have been blogging all new entries are linked by Digital Object Identifier numbers to their place of publication.

If you find the database useful, please take time to thank the people who worked hard to compile it. I know they will appreciate hearing it.

This database began as a flat text file of bibliographic entries, which I have over the years scripted into a computer-readable format. Many errors have slipped in, including typos from the initial data entry, script fragments from my BibTeX database, and some entries that began in a non-standard format and were scrambled by scripts. Please do not write me expecting that I will fix these errors. It would take me weeks of work to do this. Works will be fixed as I cite them or enter updated information for them.

There are also errors of omission. Most entries are here because they got cited, in Milford's books, in the many research articles by him or his students, or in my work. I mention this mainly because I know that some of you will look up your own names, and find many important papers missing from the database. If you're disappointed in the representation of your articles here, by all means contact me and I will work with you. This database is mirrored on CiteULike and Mendeley and I can import your bibliographic data from these sites, EndNote, BibTeX or other standard formats.

A fuller introduction to the bibliography is in my initial announcement.

Neandertals

For years, I've worked on their bones. Now I'm working on their genes. Read more about the science studying these ancient people.

Denisova

From a finger bone of an ancient human came the record of a completely unexpected population. My lab is working on the science of the Denisova genome.

Acceleration

The advent of agriculture caused natural selection to speed up greatly in humans. We're uncovering some of the ways that populations have rapidly changed during the last 10,000 years.

Malapa

Just outside Johannesburg, the Malapa site is producing some of the most exciting finds in human evolution. This site is the headquarters of the Malapa Soft Tissue Project.